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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G02760 | AT | Annotation by Michelle Graham. TAIR10: ubiquiting-conjugating enzyme 2 | chr2:774271-775149 FORWARD LENGTH=152 | SoyBase | E_val: 4.00E-109 | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0009650 | GO-bp | Annotation by Michelle Graham. GO Biological Process: UV protection | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0033523 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H2B ubiquitination | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0016881 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity | SoyBase | N/A | ISS |
| KOG0419 | KOG | Ubiquitin-protein ligase | JGI | ISS | |
| PTHR24067 | Panther | UBIQUITIN-CONJUGATING ENZYME E2 | JGI | ISS | |
| PF00179 | PFAM | Ubiquitin-conjugating enzyme | JGI | ISS | |
| UniRef100_A9PBR0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Histone ubiquitination proteins group n=13 Tax=Spermatophyta RepID=A9PBR0_POPTR | SoyBase | E_val: 6.00E-108 | ISS |
| UniRef100_I1MTR4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTR4_SOYBN | SoyBase | E_val: 1.00E-108 | ISS |
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Glyma17g10640 not represented in the dataset |
Glyma17g10640 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g01270 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g098000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g10640.4 sequence type=transcript gene model=Glyma17g10640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAACATTCCACCGCCAAATATATATGATATTTTAAACGATGTGTGGGGAAGGGTGATTAGACCTCCATTCAATTACACCACGCTTCTAAATTCTGAGAATGAATATCGTAAGATCGAAGCAATAACCTTTTTTCCTCTGCCGCCACTGGTTTCGATCCCACACCCACAACCCTCCATCCTTCGAATGCTCTTGCGTTTTCCTTAAACTGCCTCATTCCGAAGCCATACACACATAACGGTTTTTCTAGGTGCTAGCAATGTCGACTCCTGCTAGGAAGAGGCTCATGAGAGATTTCAAGAGGCTGCAACAAGACCCTCCTGCAGGAATCAGTGGCGCCCCTCAGGATAACAACATCATGCTGTGGAATGCTGTCATATTTGGTCCTGATGATACTCCATGGGATGGAGGCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACATTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTCCTATATATGATGTAGCTGCTATACTCACTTCTATCCAGTCATTGCTTTGTGATCCCAACCCAAATTCTCCTGCAAACTCAGAAGCAGCTCGAATGTTTAGTGAGAACAAGCGGGAGTACAATCGAAGAGTTAGAGAAATTGTGGAGCAAAGTTGGACAGCTGACTAAGCTTGTCTTCATATGCTTCTGGGCCTTTGAAGTCACGAATTAGATTGCACTGCTACCTATAAGAATCATTGTGCCAACTTACTGAATTTTATGTCACATTCCTTACTGTTTTGAATGTTAGGATCATCTTATGTTTAATTCATTGTAGTTTGTGCATTGTCCATGTCAGTTCATGTATTATAGAATTCTGTCAATTTGCATCAAGATTGTTGTCAACACAATGTATAAGTTGTAGTTTCCAGAATTGGTTATGATCACAAGGCTTCAATTTCTATGGTTTCCTTGTCACGTTGCATCTAGGATTTTGCTTTCAACCTCTTTGTCGTGACCGTGAAATTGATCATACTATGATGCTCTGGCAGATTTCACTGATACTTGCCAGAATAACTTTTGCTTTCGATTTATATGATTTAGAGATTTAGTTTCGT >Glyma17g10640.5 sequence type=transcript gene model=Glyma17g10640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAAGGGTGATTAGACCTCCATTCAATTACACCACGCTTCTAAATTCTGAGAATGAATATCGTAAGATCGAAGCAATAACCTTTTTTCCTCTGCCGCCACTGGTTTCGATCCCACACCCACAACCCTCCATCCTTCGAATGCTCTTGCGTTTTCCTTAAACTGCCTCATTCCGAAGCCATACACACATAACGGGTGCTAGCAATGTCGACTCCTGCTAGGAAGAGGCTCATGAGAGATTTCAAGAGGCTGCAACAAGACCCTCCTGCAGGAATCAGTGGCGCCCCTCAGGATAACAACATCATGCTGTGGAATGCTGTCATATTTGGTCCTGATGATACTCCATGGGATGGAGGCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACATTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTCCTATATATGATGTAGCTGCTATACTCACTTCTATCCAGTCATTGCTTTGTGATCCCAACCCAAATTCTCCTGCAAACTCAGAAGCAGCTCGAATGTTTAGTGAGAACAAGCGGGAGTACAATCGAAGAGTTAGAGAAATTGTGGAGCAAAGTTGGACAGCTGACTAAGCTTGTCTTCATATGCTTCTGGGCCTTTGAAGTCACGAATTAGATTGCACTGCTACCTATAAGAATCATTGTGCCAACTTACTGAATTTTATGTCACATTCCTTACTGTTTTGAATGTTAGGATCATCTTATGTTTAATTCATTGTAGTTTGTGCATTGTCCATGTCAGTTCATGTATTATAGAATTCTGTCAATTTGCATCAAGATTGTTGTCAACACAATGTATAAGTTGTAGTTTCCAGAATTGGTTATGATCACAAGGCTTCAATTTCTATGGTTTCCTTGTCACGTTGCATCTAGGATTTTGCTTTCAACCTCTTTGTCGTGACCGTGAAATTGATCATACTATGATGCTCTGGCAGATTTCACTGATACTTGCCAGAATAACTTTTGCTTTCGATTTATATGATTTAGAGATTTAGTTTCGT
>Glyma17g10640.3 sequence type=CDS gene model=Glyma17g10640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGTCATATTTGGGCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACATTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTCCTATATATGATGTAGCTGCTATACTCACTTCTATCCAGTCATTGCTTTGTGATCCCAACCCAAATTCTCCTGCAAACTCAGAAGCAGCTCGAATGTTTAGTGAGAACAAGCGGGAGTACAATCGAAGAGTTAGAGAAATTGTGGAGCAAAGTTGGACAGCTGACTAA >Glyma17g10640.4 sequence type=CDS gene model=Glyma17g10640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGACTCCTGCTAGGAAGAGGCTCATGAGAGATTTCAAGAGGCTGCAACAAGACCCTCCTGCAGGAATCAGTGGCGCCCCTCAGGATAACAACATCATGCTGTGGAATGCTGTCATATTTGGTCCTGATGATACTCCATGGGATGGAGGCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACATTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTCCTATATATGATGTAGCTGCTATACTCACTTCTATCCAGTCATTGCTTTGTGATCCCAACCCAAATTCTCCTGCAAACTCAGAAGCAGCTCGAATGTTTAGTGAGAACAAGCGGGAGTACAATCGAAGAGTTAGAGAAATTGTGGAGCAAAGTTGGACAGCTGACTAA >Glyma17g10640.5 sequence type=CDS gene model=Glyma17g10640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGACTCCTGCTAGGAAGAGGCTCATGAGAGATTTCAAGAGGCTGCAACAAGACCCTCCTGCAGGAATCAGTGGCGCCCCTCAGGATAACAACATCATGCTGTGGAATGCTGTCATATTTGGTCCTGATGATACTCCATGGGATGGAGGCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCACCCAAACATTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTCCTATATATGATGTAGCTGCTATACTCACTTCTATCCAGTCATTGCTTTGTGATCCCAACCCAAATTCTCCTGCAAACTCAGAAGCAGCTCGAATGTTTAGTGAGAACAAGCGGGAGTACAATCGAAGAGTTAGAGAAATTGTGGAGCAAAGTTGGACAGCTGACTAA
>Glyma17g10640.3 sequence type=predicted peptide gene model=Glyma17g10640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLSYLGTFKLILQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD* >Glyma17g10640.4 sequence type=predicted peptide gene model=Glyma17g10640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLILQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD* >Glyma17g10640.5 sequence type=predicted peptide gene model=Glyma17g10640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLILQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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