Glyma17g10610 - SoyBase

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Report for Sequence Feature Glyma17g10610

Feature Type:	gene_model
Chromosome:	Gm17
Start:	7961266
stop:	7969620
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g10610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62530	AT	Annotation by Michelle Graham. TAIR10: aldehyde dehydrogenase 12A1 \| chr5:25099768-25103159 REVERSE LENGTH=556	SoyBase	E_val: 0	ISS
GO:0006560	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0010133	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline catabolic process to glutamate	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0072593	GO-bp	Annotation by Michelle Graham. GO Biological Process: reactive oxygen species metabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 1-pyrroline-5-carboxylate dehydrogenase activity	SoyBase	N/A	ISS
GO:0004028	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3-chloroallyl aldehyde dehydrogenase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0050897	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding	SoyBase	N/A	ISS
KOG2450	KOG	Aldehyde dehydrogenase	JGI		ISS
PTHR11699	Panther	ALDEHYDE DEHYDROGENASE-RELATED	JGI		ISS
PTHR11699:SF8	Panther	ALDEHYDE DEHYDROGENASE-RELATED	JGI		ISS
PF00171	PFAM	Aldehyde dehydrogenase family	JGI		ISS
UniRef100_G7JPY4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Delta-1-pyrroline-5-carboxylate dehydrogenase 1 protein n=2 Tax=Medicago RepID=G7JPY4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MTR0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTR0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g10610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g10610

Paralog	Evidence	Comments
Glyma05g01300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g10610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g097800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g10610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g10610

Limit To All Plant Sequences

>Glyma17g10610.1   sequence type=CDS   gene model=Glyma17g10610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCAAGCTTTTGGTTAGTAGAGCAGCTAGGGTTTCAACTCCACACAACCACAATGCCTTTGCTTCTTTCGCTTTCTCTAGGTATGCTCATTCATTACCATTTGCAACTGTAGAAGCAGAAGAGATATCAGGCTCTAGGGCTGCTGAAGTTTTGAACCTGGTGCAAGGTAAATGGGTAGGATCTTCAAATTGGAATACAGTTGTAGATCCTTTAAATGGAGACTCATTTATTAAAGTTGCTGAAGTTGATGAAACAGGCATTCAGCCCTTTGTAGAAAGCTTGTCCAGCTGTCCCAAACATGGTGCACACAATCCTTTTAAGGCACCAGAGAGATATCTCATGTTTGGAGAGATATCTGCTAAGGCAGCTCACATGTTATCACTTCCTAAGGTTTTGGATTTCTTTACAAGGTTAATACAAAGAGTTTCTCCAAAGAGTTACCAGCAGGCTTTTGGTGAAGTCTATGTGACACAAAAGTTTCTAGAGAATTTTTGTGGAGACCAGGTTCGTTTCCTGGCAAGGTCTTTTGCTGTACCTGGAAATCATCTTGGACAACAAAGTCATGGTTTTCGTTGGCCATATGGTCCGGTGGCAATTATTACTCCTTTTAATTTTCCCTTAGAGATTCCTGTCCTTCAATTGATGGGTGCACTTTATATGGGCAACAAGCCAGTCCTTAAAGTTGATAGCAAGGTGAGCATTGTTATGGAACAAATGTTGCGCCTGCTTCATACCTGTGGCTTACCTCTAGAAGATGTAGACTTCATAAATTCTGATGGGAAGACAATGAACAAGCTGTTGCTGGAGGGAAATCCACGAATGACTCTTTTTACTGGTAGTTCAAGAGTGGCAGAGAAGTTGGCTGTTGATTTGAAGGGCCGTGTTAAATTGGAAGATGCTGGATTTGACTGGAAAATACTGGGCCCTGATGTGCATCAGGAAGATTACGTAGCATGGGTCTGTGATCAGGATGCATACGCATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAGAACTGGTCTAAAACTTCCTTGCTATCTAAGTTGAAAGATCTTGCTGAGAGAAGAAAGTTGGCAGACTTGACAATCGGCCCAGTTCTCACAGTTACGACTGATTCAATGCTTGAGCATGTGAATAAGTTGCTTGAGATACCAGGATCAAAGTTGCTATTCGGGGGTAGTCCTCTAGAGAACCATTCAATTCCACCTATTTATGGTGCTATTAAACCAACAGCTGTCTATGTTCCTCTCGAAGAAATTATGAAGGATAAGAATTTTGAGCTTGTAACAAAAGAAATATTTGGACCATTTCAGGTTATCACGGACTATCAAAACAGTCAGCTAGCAGTTGTATTGGATGCTTTGGAAAGAATGCATAACCATTTAACAGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAGGAAGTCATTGGCAAATCAGTAAATGGTACTACTTATGCTGGTTTAAGAGCAAGGACGACCGGAGCTCCACAGAATCACTGGTTTGGACCCGCTGGTGATGCTAGAGGTGCAGGAATTGGAACACCAGAGGCTATAAAACTTGTATGGTCTTGCCACAGAGAAATAATCTATGATTTTGGGCCTGTGCCAAAGAATTGGGAAGTTCCTCCTTCTACTTGA

Predicted protein sequences of Glyma17g10610

Limit To All Plant Sequences

>Glyma17g10610.1   sequence type=predicted peptide   gene model=Glyma17g10610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFKLLVSRAARVSTPHNHNAFASFAFSRYAHSLPFATVEAEEISGSRAAEVLNLVQGKWVGSSNWNTVVDPLNGDSFIKVAEVDETGIQPFVESLSSCPKHGAHNPFKAPERYLMFGEISAKAAHMLSLPKVLDFFTRLIQRVSPKSYQQAFGEVYVTQKFLENFCGDQVRFLARSFAVPGNHLGQQSHGFRWPYGPVAIITPFNFPLEIPVLQLMGALYMGNKPVLKVDSKVSIVMEQMLRLLHTCGLPLEDVDFINSDGKTMNKLLLEGNPRMTLFTGSSRVAEKLAVDLKGRVKLEDAGFDWKILGPDVHQEDYVAWVCDQDAYACSGQKCSAQSLLFMHENWSKTSLLSKLKDLAERRKLADLTIGPVLTVTTDSMLEHVNKLLEIPGSKLLFGGSPLENHSIPPIYGAIKPTAVYVPLEEIMKDKNFELVTKEIFGPFQVITDYQNSQLAVVLDALERMHNHLTAAVVSNDPLFLQEVIGKSVNGTTYAGLRARTTGAPQNHWFGPAGDARGAGIGTPEAIKLVWSCHREIIYDFGPVPKNWEVPPST*

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