Glyma17g10580 - SoyBase

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Report for Sequence Feature Glyma17g10580

Feature Type:	gene_model
Chromosome:	Gm17
Start:	7945963
stop:	7948585
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g10580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G18850	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 40 Blast hits to 40 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:6504928-6506127 REVERSE LENGTH=399	SoyBase	E_val: 4.00E-136	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1MTQ9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MTQ9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9M9V4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F6A14.6 protein n=1 Tax=Arabidopsis thaliana RepID=Q9M9V4_ARATH	SoyBase	E_val: 2.00E-133	ISS

Expression Patterns of Glyma17g10580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g10580

Paralog	Evidence	Comments
Glyma05g01310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g10580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g097600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g10580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g10580

Limit To All Plant Sequences

>Glyma17g10580.1   sequence type=CDS   gene model=Glyma17g10580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTTACTAGAAGTAATTAAGGATGCTTCAGTCAATTCAAAACCACTTGATTCACCTATTGACTACCCAATTGTTCTGAACCCAGATGGTATCTTGCCTAATTTAAAGCCTGAAGTTGAAGATGAATCTTCCTCATCCCTCATAAAACCCCTTATTGGGTGGCAACTTTCACAAACTGATGCTGAGATTATTGACATTAGCAAAAAGTTCTTTATACAACTGAAGGCTAAGCTCAAGAACAATAATGACTTGAATAAGGGTGAGTTTATTGGTAGTTTGAATTCCTATCTAGAAAACATCAGGGACAAATTAGGGGTTGTAATTGAGTTTGATCCATCCTGTAGTGGTTATAACAGGGCTTTGATTGATAAGCTTGGAGTTTTCATGGGTAAAGATGTTGCTGGCCTGGTTTTGGATGGGAGTGTTTCTTTGGAGATTTGGGAAGTGGTCAAGGCTTTGATTGTTAATGGTATTACTGAGCATTCTTGTTATTCAAACCTGATTACAAAGTTAGTGGAAAAAAAGAGGTCTGATTTGCTCTGTTTATGCATTACGCATGGTTTCGATCTTGGTTCATCAGAAATACTTACCATTTTGAGGTACTTTCTTTCTCCGTCCAAAGATGCTTATAACAGTATGGTAACTGTGAAGAAGGATTGGGAGTGCCAAGTGCTGTTGGCCATTGAGAAAGCAAATGATAGCAATCTGAAGAAGTACTTGCTTACGGCGAAGGAGGCTTCTATTTTGCTTATGATGGCATATGATGGTTTCTCTGCGTCTGAGATTTGTTTGCATTATCTGTTTGCATCATCCAACATCAATGATGTGGTGTTATCCCCTTCATTCAGTAAGTTGAATGGCAAAGAGTTAATAAATTTGATTCGTTATTTAGCCAAGTGGTTGAAGAAATATGAGAGGTTTCCTCAAGCAGGACCGTGTCCAAAAGCCTCATCAGTTTCAGAGGCTTGTGAATGGGTTCCTAAACTCGAAGATGTTATAAAATGTCTTGGCTTAGTGCTTGATGAGAAATTTTCTTCATTGGTGTTACATCCACAGTTTCATGAGGAGCTGAGATCAATTGAAGAAGTGGTTAGTTGTTTAACCGATGAAGCCAAATTTTGCCACTTGATGACTGATGTAGTGGACAAACTAAAGATCGAAGTGAAAAGTGAAAATGATTAA

Predicted protein sequences of Glyma17g10580

Limit To All Plant Sequences

>Glyma17g10580.1   sequence type=predicted peptide   gene model=Glyma17g10580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLLEVIKDASVNSKPLDSPIDYPIVLNPDGILPNLKPEVEDESSSSLIKPLIGWQLSQTDAEIIDISKKFFIQLKAKLKNNNDLNKGEFIGSLNSYLENIRDKLGVVIEFDPSCSGYNRALIDKLGVFMGKDVAGLVLDGSVSLEIWEVVKALIVNGITEHSCYSNLITKLVEKKRSDLLCLCITHGFDLGSSEILTILRYFLSPSKDAYNSMVTVKKDWECQVLLAIEKANDSNLKKYLLTAKEASILLMMAYDGFSASEICLHYLFASSNINDVVLSPSFSKLNGKELINLIRYLAKWLKKYERFPQAGPCPKASSVSEACEWVPKLEDVIKCLGLVLDEKFSSLVLHPQFHEELRSIEEVVSCLTDEAKFCHLMTDVVDKLKIEVKSEND*

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