Glyma17g10520 - SoyBase

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Report for Sequence Feature Glyma17g10520

Feature Type:	gene_model
Chromosome:	Gm17
Start:	7916906
stop:	7920627
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g10520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62740	AT	Annotation by Michelle Graham. TAIR10: SPFH/Band 7/PHB domain-containing membrane-associated protein family \| chr5:25201320-25202535 FORWARD LENGTH=286	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043424	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase binding	SoyBase	N/A	ISS
KOG2620	KOG	Prohibitins and stomatins of the PID superfamily	JGI		ISS
PTHR10264	Panther	STOMATIN-RELATED	JGI		ISS
PTHR10264:SF25	Panther	INTEGRAL MEMBRANE PROTEINASE	JGI		ISS
PF01145	PFAM	SPFH domain / Band 7 family	JGI		ISS
UniRef100_A6YGE4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hypersensitive-induced response protein n=1 Tax=Carica papaya RepID=A6YGE4_CARPA	SoyBase	E_val: 0	ISS
UniRef100_C6TLI9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TLI9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g10520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g10520 not represented in the dataset	Glyma17g10520 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g10520

Paralog	Evidence	Comments
Glyma05g01360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g10520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g097000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g10520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g10520

Limit To All Plant Sequences

>Glyma17g10520.4   sequence type=transcript   gene model=Glyma17g10520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGAAAGATTATCATACCAAAAAATTGCTCAAAAAAATTATTATACCAAGAAAATGTATAGAAAAATTATTATCCCATCCATGTCAATTATTATTAGACTTTTGAAGTCGTCTTTGGTTGACCTGCACTTCGTAAATCCACTTATCTGAAATTCTGAACAGTACAGTTCTTGCGTTGTTTCGGAGGATCAATTGTTTGATTAAGCAAAAAACTTAATAGTAGTTAAAAGCAAATGGGGAATCTTTTTTGTTGTGTGCAAGTTGATCAATCAACAGTGGCTATAAGAGAAGGATTTGGACGATTTGAGAAGGTACTTCAGCCAGGATGCCATTGCATGCCATGGTTCCTTGGAAAACAACTTGCTGGTCATCTCTCTCTTCGGCTACAGCAACTGGATCTTCGATGTGAGACCAAAACAAAGGATAATGTCTTTGTCAACGTTGTTGCTTCTATTCAATATCGTGCCCTGGCAGAGAAGGCCAATGATGCTTTTTACAAATTGAGCAATACAAAGACCCAAATTCAAGCCTATGTTTTTGATGTAATTAGGGCAAGTGTTCCAAAACTAAACTTAGATGATGCTTTTGAGCAGAAAAATGAAATTGCCAAAGCTGTGGAAGAAGAACTTGAGAAGGCTATGTCAGCTTATGGGTATGAAATTGTTCAAACACTGATTGTTGATATAGATCCAGATGAGCATGTGAAGCGGGCCATGAATGAAATCAATGCTGCTGCAAGATTGAGGATGGCAGCTAATGAGAAGGCAGAGGCAGAAAAGATCTTGCTAATTAAACGAGCCGAGGGTGAGGCTGAGTCTAAGTATCTCTCTGGACTGGGTATTGCTCGCCAACGCCAAGCAATTGTGGATGGCTTGAGAGATAGTGTGCTTGGATTCTCAGTTAATGTACCTGGGACAACTGCAAAAGATGTCATGGACATGGTCCTTGTCACTCAGTATTTTGACACTATGAAAGAAATTGGTGCTGCCTCTAAGTCTTCTGCTGTGTTCATTCCACATGGACCTGGTGCTGTTCGTGATGTAGCTGGTCAAATTCGGGAGGGACTTCTTCAGGCTTCTCATCAGTAGCCTCTACTCCACCTAGATCTTGTGTTTGGTTTGAATTGGAGTATGGTGAAGTTATAGCACCTGTGTCTACCTGTATTTCTGTTCTGTGCAGTGTGTTTTGTGATTTTGTTTTAGAATAAACTGCAAAATTGATCCTCCAAAGATTATGGCATCATCTCATTAATCTTCAAAAGATTTTTTCTATCAAATCAGTCCCACAAATATCTAAAATGTTACCAATTTTTTTCTTAGAGGACTAAAGAAGTGGTAACACAAGAATTTAGTATTTGATTTGTATCTTTGTGGGATTGATTTGTTGACCAAAATCTTTGAAGGACCAGTTCAAGGACTTACTCTTTCGATTTATACTTTCAAGCAGTCAAGTAATACTGTATATTCTGTTGTCTATATTGTGAATCATGCATAACTAAACTATTAAGTATCCCTGTATATATATGTTGACTAAATTGTGAAAGTTGCATAAACAAGAAATTTCCTATATACCGTTAGAGAGTAGATAACTATATACTGTTA

Coding sequences of Glyma17g10520

Limit To All Plant Sequences

>Glyma17g10520.3   sequence type=CDS   gene model=Glyma17g10520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAATCTTTTTTGTTGTGTGCAAGTTGATCAATCAACAGTGGCTATAAGAGAAGGATTTGGACGATTTGAGAAGGTACTTCAGCCAGGATGCCATTGCATGCCATGGTTCCTTGGAAAACAACTTGCTGGTCATCTCTCTCTTCGGCTACAGCAACTGGATCTTCGATGTGAGACCAAAACAAAGGATAATGTCTTTGTCAACGTTGTTGCTTCTATTCAATATCGTGCCCTGGCAGAGAAGGCCAATGATGCTTTTTACAAATTGAGCAATACAAAGACCCAAATTCAAGCCTATGTTTTTGATGTAATTAGGGCAAGTGTTCCAAAACTAAACTTAGATGATGCTTTTGAGCAGAAAAATGAAATTGCCAAAGCTGTGGAAGAAGAACTTGAGAAGGCTATGTCAGCTTATGGGTATGAAATTGTTCAAACACTGATTGTTGATATAGATCCAGATGAGCATGTGAAGCGGGCCATGAATGAAATCAATGCTGCTGCAAGATTGAGGATGGCAGCTAATGAGAAGGCAGAGGCAGAAAAGATCTTGCTAATTAAACGAGCCGAGGGTGAGGCTGAGTCTAAGTATCTCTCTGGACTGGGTATTGCTCGCCAACGCCAAGCAATTGTGGATGGCTTGAGAGATAGTGTGCTTGGATTCTCAGTTAATGTACCTGGGACAACTGCAAAAGATGTCATGGACATGGTCCTTGTCACTCAGTATTTTGACACTATGAAAGAAATTGGTGCTGCCTCTAAGTCTTCTGCTGTGTTCATTCCACATGGACCTGGTGCTGTTCGTGATGTAGCTGGTCAAATTCGGGAGGGACTTCTTCAGGCTTCTCATCAGTAG

>Glyma17g10520.4   sequence type=CDS   gene model=Glyma17g10520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAATCTTTTTTGTTGTGTGCAAGTTGATCAATCAACAGTGGCTATAAGAGAAGGATTTGGACGATTTGAGAAGGTACTTCAGCCAGGATGCCATTGCATGCCATGGTTCCTTGGAAAACAACTTGCTGGTCATCTCTCTCTTCGGCTACAGCAACTGGATCTTCGATGTGAGACCAAAACAAAGGATAATGTCTTTGTCAACGTTGTTGCTTCTATTCAATATCGTGCCCTGGCAGAGAAGGCCAATGATGCTTTTTACAAATTGAGCAATACAAAGACCCAAATTCAAGCCTATGTTTTTGATGTAATTAGGGCAAGTGTTCCAAAACTAAACTTAGATGATGCTTTTGAGCAGAAAAATGAAATTGCCAAAGCTGTGGAAGAAGAACTTGAGAAGGCTATGTCAGCTTATGGGTATGAAATTGTTCAAACACTGATTGTTGATATAGATCCAGATGAGCATGTGAAGCGGGCCATGAATGAAATCAATGCTGCTGCAAGATTGAGGATGGCAGCTAATGAGAAGGCAGAGGCAGAAAAGATCTTGCTAATTAAACGAGCCGAGGGTGAGGCTGAGTCTAAGTATCTCTCTGGACTGGGTATTGCTCGCCAACGCCAAGCAATTGTGGATGGCTTGAGAGATAGTGTGCTTGGATTCTCAGTTAATGTACCTGGGACAACTGCAAAAGATGTCATGGACATGGTCCTTGTCACTCAGTATTTTGACACTATGAAAGAAATTGGTGCTGCCTCTAAGTCTTCTGCTGTGTTCATTCCACATGGACCTGGTGCTGTTCGTGATGTAGCTGGTCAAATTCGGGAGGGACTTCTTCAGGCTTCTCATCAGTAG

Predicted protein sequences of Glyma17g10520

Limit To All Plant Sequences

>Glyma17g10520.3   sequence type=predicted peptide   gene model=Glyma17g10520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNLFCCVQVDQSTVAIREGFGRFEKVLQPGCHCMPWFLGKQLAGHLSLRLQQLDLRCETKTKDNVFVNVVASIQYRALAEKANDAFYKLSNTKTQIQAYVFDVIRASVPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIDPDEHVKRAMNEINAAARLRMAANEKAEAEKILLIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVAGQIREGLLQASHQ*

>Glyma17g10520.4   sequence type=predicted peptide   gene model=Glyma17g10520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNLFCCVQVDQSTVAIREGFGRFEKVLQPGCHCMPWFLGKQLAGHLSLRLQQLDLRCETKTKDNVFVNVVASIQYRALAEKANDAFYKLSNTKTQIQAYVFDVIRASVPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIDPDEHVKRAMNEINAAARLRMAANEKAEAEKILLIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVAGQIREGLLQASHQ*

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