Glyma17g10360 - SoyBase

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Report for Sequence Feature Glyma17g10360

Feature Type:	gene_model
Chromosome:	Gm17
Start:	7744740
stop:	7753628
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g10360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G18950	AT	Annotation by Michelle Graham. TAIR10: DDT domain superfamily \| chr1:6546539-6551549 FORWARD LENGTH=750	SoyBase	E_val: 0	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0007346	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of mitotic cell cycle	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004812	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA ligase activity	SoyBase	N/A	ISS
UniRef100_I1MTN6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTN6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2PF39	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aminoacyl-tRNA synthetase n=1 Tax=Trifolium pratense RepID=Q2PF39_TRIPR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g10360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g10360

Paralog	Evidence	Comments
Glyma05g01530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g10360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma17g10360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g10360

Limit To All Plant Sequences

>Glyma17g10360.1   sequence type=CDS   gene model=Glyma17g10360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCTACGGATCCCCTCCTTCAGTTCCCGGCGAACGATCCTCGCCGGAACCCAATCCTCCGAACCATGTCTCCGATTTGAAGGAGGAAACCACCGCCGCCGCTCCTCCTCCGCTCACCACCAGGAGCACCCGCCCCTCCCGCGCGTGCACCATGCGCGCCTCCTCTCGCCTCCTTTCCTCGCCGGCGCCGTCGAAGAAGGTGGCGCGTGCGAGGAAGGAGGGTTCGCCGCGGCCACCGTCGCAATGCAGCAAGATCGTGACTCCGCTGGTGGAGCCGCCGTCGCCGTCGCAGTTGCCGCGGTGGAACCTGCGGTCGATGTGGGAGTTCGCTTCCGTGCTGAATTTCTTGCACCTGTTTAGGCCTCTTTTGAATATCTCGTTGGAATTCTCTGCGGAAGAGTTCGAGACAGCTCTTCTTGCTCCCAACGATACTTTGTTTCATATACATATGCCTTTGCTAAAGGCAATCCCTCCTATTACACGAATGGCACTCACACGCGATACTTGGATAACCGTATTATGCAGGAAATTGAGAGATTGGTGGCATTGGGTTGCTGATGGGGATCTTCCAATTGTTGCTTCACATGGGGCGGAGATTGAAATATATAAATTACTTGATCCAGGGGTCCGTGTTGTTATCTTAAAAGTATTATGTGATATTCGTGTTGAGCAAGAAGATATCCGAAGTTATATTGACAACTCAATGAAACACGGTGTTCAACTTTCAACATTCCGTAAAGAGCGTATTGGAGGTGATTCAAATGGAATTTCTTATTGGTATGAAGATGACCCCATTATTGGTCATAGGATGTATCGAGAAATAAGGAAAACCGAAGTGGTACAAATGAAGAAAGGGAAACCAAGAGGTTCCCTGGTTCTTTCTAACACATCATACCTGTGGGAAGTAATTGCTACCAATTTTGATGAATTTGAAGATGTTTCTGAGAAGCTTTTCTCAAGTAAAAACAGAACAGAGACTTCTGTGGGGAAAAGGCTGAAGATAGACATGCTTCCTGAAATTGAGAAAGTTCATAAGAAAAAGGAGAAGTTGCTGAAAAAGCAACACAGACAAGCTCTTCTGCTTGATAATTACTTGGTTGTTGACGGGCTTGGTCCTGGGCGTTCTCTTCGTGACAGGAAACCTGTTACCTACACTTTTGATGATTATGATCAGTCAATCAAGGAAGCAATTAAAGTAACCAAGCAGAAACAGTCATCTCCAGAACATATGCCCAGGAGAGAATCGGTAGCAAAAGCGGAAGCTTTGACTAATGGTAAATATGGTCCTCCATATGCTACACTAGATCGGAATTTTGGTATATCATCTCCAGAATCATCTGATTCTGATGATGACAAAGAAGATAATGAAACTGACAACTTGGATCGAAGCAATCGTCAAAGACGGAGACCTAAACGGTATACAGAAAGAGAGTTTGTTGAGGCAGTATCAGATAATGAGACAGACTTCGACAGTGATGATGATATTGTTGGAGAAGCCGTATATGATGAAGAATATCTCAAGAAACGCAAGCAGAAAAGGATGTCTTCTAGTGGCTCCGAAGGAGATGATGAAGAGTATCAGTGGGATGAATACAATGTTGAAGATGATGAAGAAGAAGATGACGATGACGATGATTCCTTAAGCATAAGTGAGGATAGTGACAAACCCCTCAAGGTCAAACAGTTGCGTGGCCGCACAAGGAGAGAAACCAAACTCAGGTCTGTGGGTGAGATACAATCCGGTCTAAGACGCAGTAAGAGGGCAACTAAAAATCGTATAAATTACCGACAATGTGAGGCATCAGAATCAGAAACAGAGTTGATCAAATCTGAGAAGTCTAATTCATCAGCTGATCACTCAGATCCCAGTGAGAATGGTGAATACATGATGGAAAGTGAAGATTCAGATGGCAGTGATAATGAAGAACAAGAAAAGAAAGTAGATGAGCCTGTTCCATATCCAGCAGTAGAAGAGAATGAACAAAACCAGCCTCCTGAAAAATTAAGCAGTCCTGGTCAGGAGGAAGTTGAGAGCAGCACAGGAAAGAGACGCTTCCTTGATTTGAATGAGCTTGCCCCTAGCACGGGTTTCGATGATGGTCCAAACACAATAATGAAAGATGAAGACAATGATTACTGA

Predicted protein sequences of Glyma17g10360

Limit To All Plant Sequences

>Glyma17g10360.1   sequence type=predicted peptide   gene model=Glyma17g10360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPYGSPPSVPGERSSPEPNPPNHVSDLKEETTAAAPPPLTTRSTRPSRACTMRASSRLLSSPAPSKKVARARKEGSPRPPSQCSKIVTPLVEPPSPSQLPRWNLRSMWEFASVLNFLHLFRPLLNISLEFSAEEFETALLAPNDTLFHIHMPLLKAIPPITRMALTRDTWITVLCRKLRDWWHWVADGDLPIVASHGAEIEIYKLLDPGVRVVILKVLCDIRVEQEDIRSYIDNSMKHGVQLSTFRKERIGGDSNGISYWYEDDPIIGHRMYREIRKTEVVQMKKGKPRGSLVLSNTSYLWEVIATNFDEFEDVSEKLFSSKNRTETSVGKRLKIDMLPEIEKVHKKKEKLLKKQHRQALLLDNYLVVDGLGPGRSLRDRKPVTYTFDDYDQSIKEAIKVTKQKQSSPEHMPRRESVAKAEALTNGKYGPPYATLDRNFGISSPESSDSDDDKEDNETDNLDRSNRQRRRPKRYTEREFVEAVSDNETDFDSDDDIVGEAVYDEEYLKKRKQKRMSSSGSEGDDEEYQWDEYNVEDDEEEDDDDDDSLSISEDSDKPLKVKQLRGRTRRETKLRSVGEIQSGLRRSKRATKNRINYRQCEASESETELIKSEKSNSSADHSDPSENGEYMMESEDSDGSDNEEQEKKVDEPVPYPAVEENEQNQPPEKLSSPGQEEVESSTGKRRFLDLNELAPSTGFDDGPNTIMKDEDNDY*

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