Glyma17g10340 - SoyBase

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Report for Sequence Feature Glyma17g10340

Feature Type:	gene_model
Chromosome:	Gm17
Start:	7736890
stop:	7737894
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g10340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G15770	AT	Annotation by Michelle Graham. TAIR10: RNA binding \| chr4:8978060-8978623 FORWARD LENGTH=187	SoyBase	E_val: 1.00E-114	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0042254	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis	SoyBase	N/A	ISS
GO:0042255	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosome assembly	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG3492	KOG	Ribosome biogenesis protein NIP7	JGI		ISS
PTHR23415	Panther	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT OR 60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7-RELATED	JGI		ISS
PTHR23415:SF4	Panther	60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	JGI		ISS
PF03657	PFAM	Uncharacterised protein family (UPF0113)	JGI		ISS
UniRef100_C6T3V5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Glycine max RepID=C6T3V5_SOYBN	SoyBase	E_val: 6.00E-128	ISS
UniRef100_UPI0001817FB6	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001817FB6 related cluster n=1 Tax=unknown RepID=UPI0001817FB6	SoyBase	E_val: 4.00E-135	ISS

Expression Patterns of Glyma17g10340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g10340 not represented in the dataset	Glyma17g10340 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g10340

Paralog	Evidence	Comments
Glyma05g01560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g10340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g095400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g10340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g10340

Limit To All Plant Sequences

>Glyma17g10340.1   sequence type=CDS   gene model=Glyma17g10340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACCCTTGGACGAGAAGGAGACGAGCGCAGTGTTCGAGAAGCTGTTCAAGTTCGTCGGAAACAACCTGAAGAACATCGTGGAGAACCCCTCGCACGAAGGTCCCGATTCGAACCCCGGGCGCTACTGCTTCCGGCTCCACAAGAACAAGATCTTCTACGCCAGCGAGTCCCTCGTGAAGCGCGCCACCAACGTCGCCCGCCCCAACCTGGTCTCCCTCGGCACCTGCATCGGGAAATACACCCACGGCGGCAGCTTCCACCTCACCGTCCAGGCCCTCAACTTGCTCGCCGCCAACGCCAAGCACAAGGTCTGGCTCAAGCCCCAGTCCGAGATGTCCTTCTTGTACGGCAACCATGTCTTGAAGGGCGCTCTCGGGAAACTCTCCGAAAACATCGCTGCCGGTGACGGGGTTGTCGTCTTCTCCATGGCCGACGTGCCGTTGGGTTTCGGTGTCGCCGCCAAGTCCACGCTGGATTGTAGGAAGCTGGATCCCAACGGGATTGTTGTTCTGCACCAGGCCGATGTGGGAGAGTACTTGAGGATGGAAGATGAGCTTTGA

Predicted protein sequences of Glyma17g10340

Limit To All Plant Sequences

>Glyma17g10340.1   sequence type=predicted peptide   gene model=Glyma17g10340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRPLDEKETSAVFEKLFKFVGNNLKNIVENPSHEGPDSNPGRYCFRLHKNKIFYASESLVKRATNVARPNLVSLGTCIGKYTHGGSFHLTVQALNLLAANAKHKVWLKPQSEMSFLYGNHVLKGALGKLSENIAAGDGVVVFSMADVPLGFGVAAKSTLDCRKLDPNGIVVLHQADVGEYLRMEDEL*

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