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Report for Sequence Feature Glyma17g10330

Feature Type:gene_model
Chromosome:Gm17
Start:7732242
stop:7736394
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g10330
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G62620AT Annotation by Michelle Graham. TAIR10: Galactosyltransferase family protein | chr5:25137136-25139764 FORWARD LENGTH=681 SoyBaseE_val: 0ISS
GO:0006486GO-bp Annotation by Michelle Graham. GO Biological Process: protein glycosylation SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0008378GO-mf Annotation by Michelle Graham. GO Molecular Function: galactosyltransferase activity SoyBaseN/AISS
GO:0016758GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups SoyBaseN/AISS
GO:0030246GO-mf Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding SoyBaseN/AISS
KOG2287 KOG Galactosyltransferases JGI ISS
PTHR11214Panther BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE JGI ISS
PTHR11214:SF11Panther BETA 1,3-GALACTOSYLTRANSFERASE-RELATED JGI ISS
PF00337PFAM Galactoside-binding lectin JGI ISS
PF01762PFAM Galactosyltransferase JGI ISS
UniRef100_B9R916UniRef Annotation by Michelle Graham. Most informative UniRef hit: Galactosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9R916_RICCO SoyBaseE_val: 0ISS
UniRef100_I1MTN4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTN4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g10330
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g10330
ParalogEvidenceComments
Glyma05g01570 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g10330 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g095300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g10330
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g10330
>Glyma17g10330.1   sequence type=CDS   gene model=Glyma17g10330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAGAGGGAACAATTTGGTCGCATTGAGCAGACAACGATCCATTCAGATTCTCATCGCCATTGCGTTCTTGTACGTCCTCTTCTTCACCCTCGAAATCCCCCTCGTCTTCAGAATCGCCCAAAAACAACGACCCACTCACACCCGCCGTCAACTCGTTCGCCGCCAAAACGGCGTCGTCTCCGCCTTGATCCTAAACGACGCCGCGTTCGATTCGGAGCTCTACCAATCCTCCTGCCGCGCCGGAAAAGCCATCTGGGAAGAACTAAAACTAAAATCACGGAGCCCGCGAGGCCTCATTTCTAAGCCCGAGAACCGATCTGGGCCGTGCCCGGGATCCGTCTCCGTGTCCGGGCCCGAGTTTCTGGGCCGCGGGAGTTTGATGATGATTCCGTGTGGGCTTACGTTGGGTTCCCACGTAACGGTGGTTGGGAAGCCGTCAAGGGTGCAACGGAAGACGTGTCAGTTCGTGATGGAGTTGCTGGGGCTGAAGACGGTGGAGGGTGAGGAACCGCCCAGGGTGCTACATTTCAACCCTAGGTTGAAAGGGGATTGGAGTTGGAAGCCCGTGATTGAACTCAACACGTGTTACCGCATGCATTGGGGTACTGCCTTGCGATGTGATGGTTGGAAATCCAGAGCTGGTGAAGATACTGTTGATGGGTTGTTGAAGTGTGAGAAGTGGATTAGGGGTGATGAAGATAATAGGGATGCAGTGGAGACCAAGGCAGCGTGGTGGTTGAAGAGATTGATAGGGCGAACAAAACGAGTAAATGTTGACTGGCCATTTCCATTTTCTGAGAACAAGCTATTTATTCTTACTCTTAGTGCTGGATTTGAGGGTTTCCATATTAATGTTGATGGGAGGCATGTGACCTCTTTTCCTTATCGCACTGGATTTACTCTTGAGGATGCCACTGGTCTTACTTTGAGTGGGGACATTGATGTCCATTCTGTATTTGCTGCTTCTTTGCCTTCGGTGCATCCTAATGTTTCTTCGCAGCAGCATCTTGAATTTTCAACCAGATGGCGTGCGCCAAATCTTCCTCGCTATGGTGTGGAATTGTTTGTAGGGATCCTTTCAGCTGGAAACCATTTTGCTGAGCGGATGGCTGTGAGGAAGTCATGGATGCAGCATAGCTTTATCAAATCTTCTAAAGTGGTCACTCGTTTCTTTGTAGCACTGCACCCGAGGAAAGAAATTAATGTGGAGTTAAAGAAGGAAGCAGAATATTTTGGTGATATTGTTATAGTTCCTTACATTGATAACTATGACCTTGTTGTGTTGAAAACGATGGCCATATGTGAATATGGGGTTCACACAGTTTCTGCGGAGTATATCATGAAAGGTGATGATGACACTTTTGTAAAAATTGATGCTGTTATGAATCAAGCAAGGAATGTTCCACGTTCTATGAGCTTTTATATTGGGAACATTAATTACCGACACAAACCCTTGCGCTGGGGTAAATGGGCTGTGACATATAAGGAGTGGCCAGAAGAGGAATACCCACCCTATGCAAATGGACCGGGTTATATTTTGTCTTCTGATATTGCACACTACATTATATCTGAATTTGAGATGCATAAATTAAGGTTGTTTAAGATGGAAGATGTGAGTATGGGAATGTGGGTAAAGCAATTTAACAGATCGAAACCGGTAAACTATTTGCATAGCTTCAAGTTCTGCCAATATGGTTGTGTAGAAGGCTATTACACAGCCCATTACCAATCGCCTAGGCAGATGATATGCCTGTGGGATAAATTGCAGATGAAGACAACGCCTGAGTGCTGCAACATGAGATAA
Predicted protein sequences of Glyma17g10330
>Glyma17g10330.1   sequence type=predicted peptide   gene model=Glyma17g10330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKRGNNLVALSRQRSIQILIAIAFLYVLFFTLEIPLVFRIAQKQRPTHTRRQLVRRQNGVVSALILNDAAFDSELYQSSCRAGKAIWEELKLKSRSPRGLISKPENRSGPCPGSVSVSGPEFLGRGSLMMIPCGLTLGSHVTVVGKPSRVQRKTCQFVMELLGLKTVEGEEPPRVLHFNPRLKGDWSWKPVIELNTCYRMHWGTALRCDGWKSRAGEDTVDGLLKCEKWIRGDEDNRDAVETKAAWWLKRLIGRTKRVNVDWPFPFSENKLFILTLSAGFEGFHINVDGRHVTSFPYRTGFTLEDATGLTLSGDIDVHSVFAASLPSVHPNVSSQQHLEFSTRWRAPNLPRYGVELFVGILSAGNHFAERMAVRKSWMQHSFIKSSKVVTRFFVALHPRKEINVELKKEAEYFGDIVIVPYIDNYDLVVLKTMAICEYGVHTVSAEYIMKGDDDTFVKIDAVMNQARNVPRSMSFYIGNINYRHKPLRWGKWAVTYKEWPEEEYPPYANGPGYILSSDIAHYIISEFEMHKLRLFKMEDVSMGMWVKQFNRSKPVNYLHSFKFCQYGCVEGYYTAHYQSPRQMICLWDKLQMKTTPECCNMR*






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