SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G62580 | AT | Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr5:25120010-25122259 FORWARD LENGTH=615 | SoyBase | E_val: 1.00E-154 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| PF02985 | PFAM | HEAT repeat | JGI | ISS | |
| UniRef100_B9R900 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Microtubule-associated protein TORTIFOLIA1, putative n=1 Tax=Ricinus communis RepID=B9R900_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E820 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E820 related cluster n=1 Tax=unknown RepID=UPI000233E820 | SoyBase | E_val: 0 | ISS |
|
Glyma17g10206 not represented in the dataset |
Glyma17g10206 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g01680 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g094100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g10206.2 sequence type=transcript gene model=Glyma17g10206 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCTTAAATAACCAGAAAACGACACGCCGTTTCTGTCTTCACCTTCACTTTCACTCTCCGCAACTGAACATTGATAAAACCGTTTGTTCCTCCCATTCCCACTCCCAAGCCAAACGAACTAAAATCACCGGCGATGTTGCCGGGGATTCCACCGGCTCCACCACCGCAACAGTAACCGATCCTTCGCCGGAACCATCACATTAACCACAATGTCGTCGACACCGCAGAGCTTAAAGCAGAGAGTCTTCAGATGCCTAACCAAACTCTCCGACCGCGACACGCAGTCTCTCGCCGCTGCGGAGCTCGAGTCAATCGCTCGAAACCTCGACGGAGCCACCTTGCCGATGTTCCTCTCGTGCATGTACTCCACCGACGACTCCGACAAGCCACCGGTGCGCAAGCAATGCGTTCAGCTCCTAGGGTTCCTCGCGGAGACGCACGGCAACATGCTCGCGCCGTACCTGCCAAAGATCCTCGGCAGCGTCGTGCGAAGGCTCCGCGATGCGGACTCGTCGGTCCGATCGGCGTGCGTGAATTCCATTGCGGCATTGTCACGCCACGTCAGCAAGCCGCCGCTGAATGCGTTTCTGAAGCCGTTGGCGGAGGCGCTTTTCACAGAGCAGGACCAGAACGCGCAGGCCAGCGCGGCGATGTGCCTCGCCGCCGCGATCGACGGAGCTCCGGATCCGGACCCGGCTAGGCTGGCGAAGCTCCTGCCGAGGTTCGAGAAGCTTCTAAAGCGCGACGGTTTCAAGGCGAAGCCCGCGCTGTTGACGCTTGTCGGAAGCGTCGTCGCCGCCGGCGGCGCTTCCGGCCACGTGCCGCTGAATAGTTTGGTTCCGTGCTTGGTGGAAGCGTTGAGCAGCGATGACTGGGCGACGCGTAAGGCCGCGGCGGAGACGCTCGTGGTGGTTGCCGACGTGGAGAGGGATTTCTTATCGGAGTTCAAGGCTGAGTGTGTTAGAGTTTTCGAGAATCGACGGTTTGATAAGGTGAAATTAGTTCGGGACGTTATGAATCAGATGTTGGAAGCGTGGAAGCAGATTCCTGATGTTTCGGATGAAGTTTCGCCACCTCCTAAATCGCAATCTTCTTCCAAAGAGAATGCAAGTGATGGGCGCTATCCCCAAGTCTCTCACAATTCATGTAGTCCTCGTTCAATGATGGCCAATTTGCGGAGGAAATCTACTCCTTTCAGCAGATTCAGTCCAGCAGATAGTTCTTCTGCTAGCAATGCTAAGAATTCGAGTGCTTCAAGTAGTAACAAGAGAAGATTGTTTGTTTCACGGAAATTAAACCATATGAATTGGGATGCTCCAATTGCTATGGCTGATCAGGGAGATCTTCAGGAGAGGGATGGAATTGTTTTGGATAGGAGCAAAATGGATAAAAGCAGAGTTTCAAAGTCAGAAATGAAACGGGTACTGCTAACTAAAAGTTCTGAGGATAAAATGCAAAAGTATGGTGGGTCCAAAGCTGGATCTCGTGTGGTTCCATATCATGAAGATGAGAGTCAAGACTCAGTTCCTGTCAGTATTGTCTCTAAAGATCTCCAAAGGAATGACAAAGAGAGTGAAGATTTATCGCTGATCCGTGATCAGTTACATCAGATTGAGAAGCAGCAGTCAAGTCTACTCGATCTTCTACAGAAATTCATGGGAAGCTCACAAAATGGAATGCGTTCTTTAGAGACTCGTGTGCATGGCCTTGAGTTGGCATTGGATGAGATCTCTTATGATTTGGCTATATCAAGTGGAAGGATGACTAAATCTGATGCTCAGGGTAACGCATGTTGCATGCTACCTGGAGCAGAATTTTTGAGCTCCAAATTCCGGAGGAAAACACATGGCCGGGATTCAATCGTGCGATTCTCTAGATCAGGTGGCACCCCATCACTTGCTGCCATGAACTACCCACCCAATAGGAATGCTGAAACTAAGTTGACAAACCACAGATTTAGGCCTGACGGAGGCTTCATCACTAATCCGCTTGCAGAGATTCATACGAATTCGAGGAATTTTGCGACATTGGAGATAGCTTAAATCTTAAAAGCAGATGTGCTGCACAATCTAGAATGCAAATTTGATCTTTTGATTCTCAATCAGCTTTGGTGGAAGGACCCCCCTTGATGGGGATTACGATTCAATCAGAATATATAAATTTGTTGTGCCACTCGAAAACATTTCTATTTAGTCATGTTCCAAGTGAAAAAGGCATGAAGCGAGCTAGACCATACATTTCTACGTCGCAGTGCAGAACTTCATTGGAATATTCATTGATAAATCTTGGGCAAGAACAGCACATTGGAGTGAGTTCGCGACTAAATACCACACTATTTTAAAATAAGGGTGAATTTGTATATGAACAGTGGAGTGACAGGCTGCTTATTTTTTTATTTTATGATTAAGTATTGCGTTGTATAATGTATTCGAGTTATGGTTAAAGGTTCTACAGTGGCATGATGCACTATCGGCATTTCATCATTGGATAACAATGCTTTTGGTCTATTATTC
>Glyma17g10206.1 sequence type=CDS gene model=Glyma17g10206 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGTCGACACCGCAGAGCTTAAAGCAGAGAGTCTTCAGATGCCTAACCAAACTCTCCGACCGCGACACGCAGTCTCTCGCCGCTGCGGAGCTCGAGTCAATCGCTCGAAACCTCGACGGAGCCACCTTGCCGATGTTCCTCTCGTGCATGTACTCCACCGACGACTCCGACAAGCCACCGGTGCGCAAGCAATGCGTTCAGCTCCTAGGGTTCCTCGCGGAGACGCACGGCAACATGCTCGCGCCGTACCTGCCAAAGATCCTCGGCAGCGTCGTGCGAAGGCTCCGCGATGCGGACTCGTCGGTCCGATCGGCGTGCGTGAATTCCATTGCGGCATTGTCACGCCACGTCAGCAAGCCGCCGCTGAATGCGTTTCTGAAGCCGTTGGCGGAGGCGCTTTTCACAGAGCAGGACCAGAACGCGCAGGCCAGCGCGGCGATGTGCCTCGCCGCCGCGATCGACGGAGCTCCGGATCCGGACCCGGCTAGGCTGGCGAAGCTCCTGCCGAGGTTCGAGAAGCTTCTAAAGCGCGACGGTTTCAAGGCGAAGCCCGCGCTGTTGACGCTTGTCGGAAGCGTCGTCGCCGCCGGCGGCGCTTCCGGCCACGTGCCGCTGAATAGTTTGGTTCCGTGCTTGGTGGAAGCGTTGAGCAGCGATGACTGGGCGACGCGTAAGGCCGCGGCGGAGACGCTCGTGGTGGTTGCCGACGTGGAGAGGGATTTCTTATCGGAGTTCAAGGCTGAGTGTGTTAGAGTTTTCGAGAATCGACGGTTTGATAAGGTGAAATTAGTTCGGGACGTTATGAATCAGATGTTGGAAGCGTGGAAGCAGATTCCTGATGTTTCGGATGAAGTTTCGCCACCTCCTAAATCGCAATCTTCTTCCAAAGAGAATGCAAGTGATGGGCGCTATCCCCAAGTCTCTCACAATTCATGTAGTCCTCGTTCAATGATGGCCAATTTGCGGAGGAAATCTACTCCTTTCAGCAGATTCAGTCCAGCAGATAGTTCTTCTGCTAGCAATGCTAAGAATTCGAGTGCTTCAAGTAGTAACAAGAGAAGATTGTTTGTTTCACGGAAATTAAACCATATGAATTGGGATGCTCCAATTGCTATGGCTGATCAGGGAGATCTTCAGGAGAGGGATGGAATTGTTTTGGATAGGAGCAAAATGGATAAAAGCAGAGTTTCAAAGTCAGAAATGAAACGGGTACTGCTAACTAAAAGTTCTGAGGATAAAATGCAAAAGTATGGTGGGTCCAAAGCTGGATCTCGTGTGGTTCCATATCATGAAGATGAGAGTCAAGACTCAGTTCCTGTCAGTATTGTCTCTAAAGATCTCCAAAGGAATGACAAAGAGAGTGAAGATTTATCGCTGATCCGTGATCAGTTACATCAGATTGAGAAGCAGCAGTCAAGTCTACTCGATCTTCTACAGAAATTCATGGGAAGCTCACAAAATGGAATGCGTTCTTTAGAGACTCGTGTGCATGGCCTTGAGTTGGCATTGGATGAGATCTCTTATGATTTGGCTATATCAAGTGGAAGGATGACTAAATCTGATGCTCAGGGTAACGCATGTTGCATGCTACCTGGAGCAGAATTTTTGAGCTCCAAATTCCGGAGGAAAACACATGGCCGGGATTCAATCGTGCGATTCTCTAGATCAGGTGGCACCCCATCACTTGCTGCCATGAACTACCCACCCAATAGGAATGCTGAAACTAAGTTGACAAACCACAGATTTAGGCCTGACGGAGGCTTCATCACTAATCCGCTTGCAGAGATTCATACGAATTCGAGGAATTTTGCGACATTGGAGATAGCTTAA >Glyma17g10206.2 sequence type=CDS gene model=Glyma17g10206 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGTCGACACCGCAGAGCTTAAAGCAGAGAGTCTTCAGATGCCTAACCAAACTCTCCGACCGCGACACGCAGTCTCTCGCCGCTGCGGAGCTCGAGTCAATCGCTCGAAACCTCGACGGAGCCACCTTGCCGATGTTCCTCTCGTGCATGTACTCCACCGACGACTCCGACAAGCCACCGGTGCGCAAGCAATGCGTTCAGCTCCTAGGGTTCCTCGCGGAGACGCACGGCAACATGCTCGCGCCGTACCTGCCAAAGATCCTCGGCAGCGTCGTGCGAAGGCTCCGCGATGCGGACTCGTCGGTCCGATCGGCGTGCGTGAATTCCATTGCGGCATTGTCACGCCACGTCAGCAAGCCGCCGCTGAATGCGTTTCTGAAGCCGTTGGCGGAGGCGCTTTTCACAGAGCAGGACCAGAACGCGCAGGCCAGCGCGGCGATGTGCCTCGCCGCCGCGATCGACGGAGCTCCGGATCCGGACCCGGCTAGGCTGGCGAAGCTCCTGCCGAGGTTCGAGAAGCTTCTAAAGCGCGACGGTTTCAAGGCGAAGCCCGCGCTGTTGACGCTTGTCGGAAGCGTCGTCGCCGCCGGCGGCGCTTCCGGCCACGTGCCGCTGAATAGTTTGGTTCCGTGCTTGGTGGAAGCGTTGAGCAGCGATGACTGGGCGACGCGTAAGGCCGCGGCGGAGACGCTCGTGGTGGTTGCCGACGTGGAGAGGGATTTCTTATCGGAGTTCAAGGCTGAGTGTGTTAGAGTTTTCGAGAATCGACGGTTTGATAAGGTGAAATTAGTTCGGGACGTTATGAATCAGATGTTGGAAGCGTGGAAGCAGATTCCTGATGTTTCGGATGAAGTTTCGCCACCTCCTAAATCGCAATCTTCTTCCAAAGAGAATGCAAGTGATGGGCGCTATCCCCAAGTCTCTCACAATTCATGTAGTCCTCGTTCAATGATGGCCAATTTGCGGAGGAAATCTACTCCTTTCAGCAGATTCAGTCCAGCAGATAGTTCTTCTGCTAGCAATGCTAAGAATTCGAGTGCTTCAAGTAGTAACAAGAGAAGATTGTTTGTTTCACGGAAATTAAACCATATGAATTGGGATGCTCCAATTGCTATGGCTGATCAGGGAGATCTTCAGGAGAGGGATGGAATTGTTTTGGATAGGAGCAAAATGGATAAAAGCAGAGTTTCAAAGTCAGAAATGAAACGGGTACTGCTAACTAAAAGTTCTGAGGATAAAATGCAAAAGTATGGTGGGTCCAAAGCTGGATCTCGTGTGGTTCCATATCATGAAGATGAGAGTCAAGACTCAGTTCCTGTCAGTATTGTCTCTAAAGATCTCCAAAGGAATGACAAAGAGAGTGAAGATTTATCGCTGATCCGTGATCAGTTACATCAGATTGAGAAGCAGCAGTCAAGTCTACTCGATCTTCTACAGAAATTCATGGGAAGCTCACAAAATGGAATGCGTTCTTTAGAGACTCGTGTGCATGGCCTTGAGTTGGCATTGGATGAGATCTCTTATGATTTGGCTATATCAAGTGGAAGGATGACTAAATCTGATGCTCAGGGTAACGCATGTTGCATGCTACCTGGAGCAGAATTTTTGAGCTCCAAATTCCGGAGGAAAACACATGGCCGGGATTCAATCGTGCGATTCTCTAGATCAGGTGGCACCCCATCACTTGCTGCCATGAACTACCCACCCAATAGGAATGCTGAAACTAAGTTGACAAACCACAGATTTAGGCCTGACGGAGGCTTCATCACTAATCCGCTTGCAGAGATTCATACGAATTCGAGGAATTTTGCGACATTGGAGATAGCTTAA
>Glyma17g10206.1 sequence type=predicted peptide gene model=Glyma17g10206 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSTPQSLKQRVFRCLTKLSDRDTQSLAAAELESIARNLDGATLPMFLSCMYSTDDSDKPPVRKQCVQLLGFLAETHGNMLAPYLPKILGSVVRRLRDADSSVRSACVNSIAALSRHVSKPPLNAFLKPLAEALFTEQDQNAQASAAMCLAAAIDGAPDPDPARLAKLLPRFEKLLKRDGFKAKPALLTLVGSVVAAGGASGHVPLNSLVPCLVEALSSDDWATRKAAAETLVVVADVERDFLSEFKAECVRVFENRRFDKVKLVRDVMNQMLEAWKQIPDVSDEVSPPPKSQSSSKENASDGRYPQVSHNSCSPRSMMANLRRKSTPFSRFSPADSSSASNAKNSSASSSNKRRLFVSRKLNHMNWDAPIAMADQGDLQERDGIVLDRSKMDKSRVSKSEMKRVLLTKSSEDKMQKYGGSKAGSRVVPYHEDESQDSVPVSIVSKDLQRNDKESEDLSLIRDQLHQIEKQQSSLLDLLQKFMGSSQNGMRSLETRVHGLELALDEISYDLAISSGRMTKSDAQGNACCMLPGAEFLSSKFRRKTHGRDSIVRFSRSGGTPSLAAMNYPPNRNAETKLTNHRFRPDGGFITNPLAEIHTNSRNFATLEIA* >Glyma17g10206.2 sequence type=predicted peptide gene model=Glyma17g10206 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSTPQSLKQRVFRCLTKLSDRDTQSLAAAELESIARNLDGATLPMFLSCMYSTDDSDKPPVRKQCVQLLGFLAETHGNMLAPYLPKILGSVVRRLRDADSSVRSACVNSIAALSRHVSKPPLNAFLKPLAEALFTEQDQNAQASAAMCLAAAIDGAPDPDPARLAKLLPRFEKLLKRDGFKAKPALLTLVGSVVAAGGASGHVPLNSLVPCLVEALSSDDWATRKAAAETLVVVADVERDFLSEFKAECVRVFENRRFDKVKLVRDVMNQMLEAWKQIPDVSDEVSPPPKSQSSSKENASDGRYPQVSHNSCSPRSMMANLRRKSTPFSRFSPADSSSASNAKNSSASSSNKRRLFVSRKLNHMNWDAPIAMADQGDLQERDGIVLDRSKMDKSRVSKSEMKRVLLTKSSEDKMQKYGGSKAGSRVVPYHEDESQDSVPVSIVSKDLQRNDKESEDLSLIRDQLHQIEKQQSSLLDLLQKFMGSSQNGMRSLETRVHGLELALDEISYDLAISSGRMTKSDAQGNACCMLPGAEFLSSKFRRKTHGRDSIVRFSRSGGTPSLAAMNYPPNRNAETKLTNHRFRPDGGFITNPLAEIHTNSRNFATLEIA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
