Glyma17g10206 - SoyBase

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Report for Sequence Feature Glyma17g10206

Feature Type:	gene_model
Chromosome:	Gm17
Start:	7621351
stop:	7624770
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g10206

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62580	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr5:25120010-25122259 FORWARD LENGTH=615	SoyBase	E_val: 1.00E-154	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
PF02985	PFAM	HEAT repeat	JGI		ISS
UniRef100_B9R900	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Microtubule-associated protein TORTIFOLIA1, putative n=1 Tax=Ricinus communis RepID=B9R900_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E820	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E820 related cluster n=1 Tax=unknown RepID=UPI000233E820	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g10206

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g10206 not represented in the dataset	Glyma17g10206 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g10206

Paralog	Evidence	Comments
Glyma05g01680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g10206 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g094100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g10206

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g10206

Limit To All Plant Sequences

>Glyma17g10206.2   sequence type=transcript   gene model=Glyma17g10206   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTTAAATAACCAGAAAACGACACGCCGTTTCTGTCTTCACCTTCACTTTCACTCTCCGCAACTGAACATTGATAAAACCGTTTGTTCCTCCCATTCCCACTCCCAAGCCAAACGAACTAAAATCACCGGCGATGTTGCCGGGGATTCCACCGGCTCCACCACCGCAACAGTAACCGATCCTTCGCCGGAACCATCACATTAACCACAATGTCGTCGACACCGCAGAGCTTAAAGCAGAGAGTCTTCAGATGCCTAACCAAACTCTCCGACCGCGACACGCAGTCTCTCGCCGCTGCGGAGCTCGAGTCAATCGCTCGAAACCTCGACGGAGCCACCTTGCCGATGTTCCTCTCGTGCATGTACTCCACCGACGACTCCGACAAGCCACCGGTGCGCAAGCAATGCGTTCAGCTCCTAGGGTTCCTCGCGGAGACGCACGGCAACATGCTCGCGCCGTACCTGCCAAAGATCCTCGGCAGCGTCGTGCGAAGGCTCCGCGATGCGGACTCGTCGGTCCGATCGGCGTGCGTGAATTCCATTGCGGCATTGTCACGCCACGTCAGCAAGCCGCCGCTGAATGCGTTTCTGAAGCCGTTGGCGGAGGCGCTTTTCACAGAGCAGGACCAGAACGCGCAGGCCAGCGCGGCGATGTGCCTCGCCGCCGCGATCGACGGAGCTCCGGATCCGGACCCGGCTAGGCTGGCGAAGCTCCTGCCGAGGTTCGAGAAGCTTCTAAAGCGCGACGGTTTCAAGGCGAAGCCCGCGCTGTTGACGCTTGTCGGAAGCGTCGTCGCCGCCGGCGGCGCTTCCGGCCACGTGCCGCTGAATAGTTTGGTTCCGTGCTTGGTGGAAGCGTTGAGCAGCGATGACTGGGCGACGCGTAAGGCCGCGGCGGAGACGCTCGTGGTGGTTGCCGACGTGGAGAGGGATTTCTTATCGGAGTTCAAGGCTGAGTGTGTTAGAGTTTTCGAGAATCGACGGTTTGATAAGGTGAAATTAGTTCGGGACGTTATGAATCAGATGTTGGAAGCGTGGAAGCAGATTCCTGATGTTTCGGATGAAGTTTCGCCACCTCCTAAATCGCAATCTTCTTCCAAAGAGAATGCAAGTGATGGGCGCTATCCCCAAGTCTCTCACAATTCATGTAGTCCTCGTTCAATGATGGCCAATTTGCGGAGGAAATCTACTCCTTTCAGCAGATTCAGTCCAGCAGATAGTTCTTCTGCTAGCAATGCTAAGAATTCGAGTGCTTCAAGTAGTAACAAGAGAAGATTGTTTGTTTCACGGAAATTAAACCATATGAATTGGGATGCTCCAATTGCTATGGCTGATCAGGGAGATCTTCAGGAGAGGGATGGAATTGTTTTGGATAGGAGCAAAATGGATAAAAGCAGAGTTTCAAAGTCAGAAATGAAACGGGTACTGCTAACTAAAAGTTCTGAGGATAAAATGCAAAAGTATGGTGGGTCCAAAGCTGGATCTCGTGTGGTTCCATATCATGAAGATGAGAGTCAAGACTCAGTTCCTGTCAGTATTGTCTCTAAAGATCTCCAAAGGAATGACAAAGAGAGTGAAGATTTATCGCTGATCCGTGATCAGTTACATCAGATTGAGAAGCAGCAGTCAAGTCTACTCGATCTTCTACAGAAATTCATGGGAAGCTCACAAAATGGAATGCGTTCTTTAGAGACTCGTGTGCATGGCCTTGAGTTGGCATTGGATGAGATCTCTTATGATTTGGCTATATCAAGTGGAAGGATGACTAAATCTGATGCTCAGGGTAACGCATGTTGCATGCTACCTGGAGCAGAATTTTTGAGCTCCAAATTCCGGAGGAAAACACATGGCCGGGATTCAATCGTGCGATTCTCTAGATCAGGTGGCACCCCATCACTTGCTGCCATGAACTACCCACCCAATAGGAATGCTGAAACTAAGTTGACAAACCACAGATTTAGGCCTGACGGAGGCTTCATCACTAATCCGCTTGCAGAGATTCATACGAATTCGAGGAATTTTGCGACATTGGAGATAGCTTAAATCTTAAAAGCAGATGTGCTGCACAATCTAGAATGCAAATTTGATCTTTTGATTCTCAATCAGCTTTGGTGGAAGGACCCCCCTTGATGGGGATTACGATTCAATCAGAATATATAAATTTGTTGTGCCACTCGAAAACATTTCTATTTAGTCATGTTCCAAGTGAAAAAGGCATGAAGCGAGCTAGACCATACATTTCTACGTCGCAGTGCAGAACTTCATTGGAATATTCATTGATAAATCTTGGGCAAGAACAGCACATTGGAGTGAGTTCGCGACTAAATACCACACTATTTTAAAATAAGGGTGAATTTGTATATGAACAGTGGAGTGACAGGCTGCTTATTTTTTTATTTTATGATTAAGTATTGCGTTGTATAATGTATTCGAGTTATGGTTAAAGGTTCTACAGTGGCATGATGCACTATCGGCATTTCATCATTGGATAACAATGCTTTTGGTCTATTATTC

Coding sequences of Glyma17g10206

Limit To All Plant Sequences

>Glyma17g10206.1   sequence type=CDS   gene model=Glyma17g10206   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTCGACACCGCAGAGCTTAAAGCAGAGAGTCTTCAGATGCCTAACCAAACTCTCCGACCGCGACACGCAGTCTCTCGCCGCTGCGGAGCTCGAGTCAATCGCTCGAAACCTCGACGGAGCCACCTTGCCGATGTTCCTCTCGTGCATGTACTCCACCGACGACTCCGACAAGCCACCGGTGCGCAAGCAATGCGTTCAGCTCCTAGGGTTCCTCGCGGAGACGCACGGCAACATGCTCGCGCCGTACCTGCCAAAGATCCTCGGCAGCGTCGTGCGAAGGCTCCGCGATGCGGACTCGTCGGTCCGATCGGCGTGCGTGAATTCCATTGCGGCATTGTCACGCCACGTCAGCAAGCCGCCGCTGAATGCGTTTCTGAAGCCGTTGGCGGAGGCGCTTTTCACAGAGCAGGACCAGAACGCGCAGGCCAGCGCGGCGATGTGCCTCGCCGCCGCGATCGACGGAGCTCCGGATCCGGACCCGGCTAGGCTGGCGAAGCTCCTGCCGAGGTTCGAGAAGCTTCTAAAGCGCGACGGTTTCAAGGCGAAGCCCGCGCTGTTGACGCTTGTCGGAAGCGTCGTCGCCGCCGGCGGCGCTTCCGGCCACGTGCCGCTGAATAGTTTGGTTCCGTGCTTGGTGGAAGCGTTGAGCAGCGATGACTGGGCGACGCGTAAGGCCGCGGCGGAGACGCTCGTGGTGGTTGCCGACGTGGAGAGGGATTTCTTATCGGAGTTCAAGGCTGAGTGTGTTAGAGTTTTCGAGAATCGACGGTTTGATAAGGTGAAATTAGTTCGGGACGTTATGAATCAGATGTTGGAAGCGTGGAAGCAGATTCCTGATGTTTCGGATGAAGTTTCGCCACCTCCTAAATCGCAATCTTCTTCCAAAGAGAATGCAAGTGATGGGCGCTATCCCCAAGTCTCTCACAATTCATGTAGTCCTCGTTCAATGATGGCCAATTTGCGGAGGAAATCTACTCCTTTCAGCAGATTCAGTCCAGCAGATAGTTCTTCTGCTAGCAATGCTAAGAATTCGAGTGCTTCAAGTAGTAACAAGAGAAGATTGTTTGTTTCACGGAAATTAAACCATATGAATTGGGATGCTCCAATTGCTATGGCTGATCAGGGAGATCTTCAGGAGAGGGATGGAATTGTTTTGGATAGGAGCAAAATGGATAAAAGCAGAGTTTCAAAGTCAGAAATGAAACGGGTACTGCTAACTAAAAGTTCTGAGGATAAAATGCAAAAGTATGGTGGGTCCAAAGCTGGATCTCGTGTGGTTCCATATCATGAAGATGAGAGTCAAGACTCAGTTCCTGTCAGTATTGTCTCTAAAGATCTCCAAAGGAATGACAAAGAGAGTGAAGATTTATCGCTGATCCGTGATCAGTTACATCAGATTGAGAAGCAGCAGTCAAGTCTACTCGATCTTCTACAGAAATTCATGGGAAGCTCACAAAATGGAATGCGTTCTTTAGAGACTCGTGTGCATGGCCTTGAGTTGGCATTGGATGAGATCTCTTATGATTTGGCTATATCAAGTGGAAGGATGACTAAATCTGATGCTCAGGGTAACGCATGTTGCATGCTACCTGGAGCAGAATTTTTGAGCTCCAAATTCCGGAGGAAAACACATGGCCGGGATTCAATCGTGCGATTCTCTAGATCAGGTGGCACCCCATCACTTGCTGCCATGAACTACCCACCCAATAGGAATGCTGAAACTAAGTTGACAAACCACAGATTTAGGCCTGACGGAGGCTTCATCACTAATCCGCTTGCAGAGATTCATACGAATTCGAGGAATTTTGCGACATTGGAGATAGCTTAA

>Glyma17g10206.2   sequence type=CDS   gene model=Glyma17g10206   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTCGACACCGCAGAGCTTAAAGCAGAGAGTCTTCAGATGCCTAACCAAACTCTCCGACCGCGACACGCAGTCTCTCGCCGCTGCGGAGCTCGAGTCAATCGCTCGAAACCTCGACGGAGCCACCTTGCCGATGTTCCTCTCGTGCATGTACTCCACCGACGACTCCGACAAGCCACCGGTGCGCAAGCAATGCGTTCAGCTCCTAGGGTTCCTCGCGGAGACGCACGGCAACATGCTCGCGCCGTACCTGCCAAAGATCCTCGGCAGCGTCGTGCGAAGGCTCCGCGATGCGGACTCGTCGGTCCGATCGGCGTGCGTGAATTCCATTGCGGCATTGTCACGCCACGTCAGCAAGCCGCCGCTGAATGCGTTTCTGAAGCCGTTGGCGGAGGCGCTTTTCACAGAGCAGGACCAGAACGCGCAGGCCAGCGCGGCGATGTGCCTCGCCGCCGCGATCGACGGAGCTCCGGATCCGGACCCGGCTAGGCTGGCGAAGCTCCTGCCGAGGTTCGAGAAGCTTCTAAAGCGCGACGGTTTCAAGGCGAAGCCCGCGCTGTTGACGCTTGTCGGAAGCGTCGTCGCCGCCGGCGGCGCTTCCGGCCACGTGCCGCTGAATAGTTTGGTTCCGTGCTTGGTGGAAGCGTTGAGCAGCGATGACTGGGCGACGCGTAAGGCCGCGGCGGAGACGCTCGTGGTGGTTGCCGACGTGGAGAGGGATTTCTTATCGGAGTTCAAGGCTGAGTGTGTTAGAGTTTTCGAGAATCGACGGTTTGATAAGGTGAAATTAGTTCGGGACGTTATGAATCAGATGTTGGAAGCGTGGAAGCAGATTCCTGATGTTTCGGATGAAGTTTCGCCACCTCCTAAATCGCAATCTTCTTCCAAAGAGAATGCAAGTGATGGGCGCTATCCCCAAGTCTCTCACAATTCATGTAGTCCTCGTTCAATGATGGCCAATTTGCGGAGGAAATCTACTCCTTTCAGCAGATTCAGTCCAGCAGATAGTTCTTCTGCTAGCAATGCTAAGAATTCGAGTGCTTCAAGTAGTAACAAGAGAAGATTGTTTGTTTCACGGAAATTAAACCATATGAATTGGGATGCTCCAATTGCTATGGCTGATCAGGGAGATCTTCAGGAGAGGGATGGAATTGTTTTGGATAGGAGCAAAATGGATAAAAGCAGAGTTTCAAAGTCAGAAATGAAACGGGTACTGCTAACTAAAAGTTCTGAGGATAAAATGCAAAAGTATGGTGGGTCCAAAGCTGGATCTCGTGTGGTTCCATATCATGAAGATGAGAGTCAAGACTCAGTTCCTGTCAGTATTGTCTCTAAAGATCTCCAAAGGAATGACAAAGAGAGTGAAGATTTATCGCTGATCCGTGATCAGTTACATCAGATTGAGAAGCAGCAGTCAAGTCTACTCGATCTTCTACAGAAATTCATGGGAAGCTCACAAAATGGAATGCGTTCTTTAGAGACTCGTGTGCATGGCCTTGAGTTGGCATTGGATGAGATCTCTTATGATTTGGCTATATCAAGTGGAAGGATGACTAAATCTGATGCTCAGGGTAACGCATGTTGCATGCTACCTGGAGCAGAATTTTTGAGCTCCAAATTCCGGAGGAAAACACATGGCCGGGATTCAATCGTGCGATTCTCTAGATCAGGTGGCACCCCATCACTTGCTGCCATGAACTACCCACCCAATAGGAATGCTGAAACTAAGTTGACAAACCACAGATTTAGGCCTGACGGAGGCTTCATCACTAATCCGCTTGCAGAGATTCATACGAATTCGAGGAATTTTGCGACATTGGAGATAGCTTAA

Predicted protein sequences of Glyma17g10206

Limit To All Plant Sequences

>Glyma17g10206.1   sequence type=predicted peptide   gene model=Glyma17g10206   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSTPQSLKQRVFRCLTKLSDRDTQSLAAAELESIARNLDGATLPMFLSCMYSTDDSDKPPVRKQCVQLLGFLAETHGNMLAPYLPKILGSVVRRLRDADSSVRSACVNSIAALSRHVSKPPLNAFLKPLAEALFTEQDQNAQASAAMCLAAAIDGAPDPDPARLAKLLPRFEKLLKRDGFKAKPALLTLVGSVVAAGGASGHVPLNSLVPCLVEALSSDDWATRKAAAETLVVVADVERDFLSEFKAECVRVFENRRFDKVKLVRDVMNQMLEAWKQIPDVSDEVSPPPKSQSSSKENASDGRYPQVSHNSCSPRSMMANLRRKSTPFSRFSPADSSSASNAKNSSASSSNKRRLFVSRKLNHMNWDAPIAMADQGDLQERDGIVLDRSKMDKSRVSKSEMKRVLLTKSSEDKMQKYGGSKAGSRVVPYHEDESQDSVPVSIVSKDLQRNDKESEDLSLIRDQLHQIEKQQSSLLDLLQKFMGSSQNGMRSLETRVHGLELALDEISYDLAISSGRMTKSDAQGNACCMLPGAEFLSSKFRRKTHGRDSIVRFSRSGGTPSLAAMNYPPNRNAETKLTNHRFRPDGGFITNPLAEIHTNSRNFATLEIA*

>Glyma17g10206.2   sequence type=predicted peptide   gene model=Glyma17g10206   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSTPQSLKQRVFRCLTKLSDRDTQSLAAAELESIARNLDGATLPMFLSCMYSTDDSDKPPVRKQCVQLLGFLAETHGNMLAPYLPKILGSVVRRLRDADSSVRSACVNSIAALSRHVSKPPLNAFLKPLAEALFTEQDQNAQASAAMCLAAAIDGAPDPDPARLAKLLPRFEKLLKRDGFKAKPALLTLVGSVVAAGGASGHVPLNSLVPCLVEALSSDDWATRKAAAETLVVVADVERDFLSEFKAECVRVFENRRFDKVKLVRDVMNQMLEAWKQIPDVSDEVSPPPKSQSSSKENASDGRYPQVSHNSCSPRSMMANLRRKSTPFSRFSPADSSSASNAKNSSASSSNKRRLFVSRKLNHMNWDAPIAMADQGDLQERDGIVLDRSKMDKSRVSKSEMKRVLLTKSSEDKMQKYGGSKAGSRVVPYHEDESQDSVPVSIVSKDLQRNDKESEDLSLIRDQLHQIEKQQSSLLDLLQKFMGSSQNGMRSLETRVHGLELALDEISYDLAISSGRMTKSDAQGNACCMLPGAEFLSSKFRRKTHGRDSIVRFSRSGGTPSLAAMNYPPNRNAETKLTNHRFRPDGGFITNPLAEIHTNSRNFATLEIA*

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