Glyma17g10190 - SoyBase

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Report for Sequence Feature Glyma17g10190

Feature Type:	gene_model
Chromosome:	Gm17
Start:	7609628
stop:	7613119
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g10190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62910	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr5:25250830-25252015 FORWARD LENGTH=327	SoyBase	E_val: 6.00E-73	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG2068	KOG	MOT2 transcription factor	JGI		ISS
PTHR12603	Panther	CCR4-NOT TRANSCRIPTION COMPLEX RELATED	JGI		ISS
UniRef100_D3YC27	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: C4C4-type RING finger protein n=1 Tax=Vitis pseudoreticulata RepID=D3YC27_9ROSI	SoyBase	E_val: 3.00E-89	ISS
UniRef100_I1MTM4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTM4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g10190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g10190

Paralog	Evidence	Comments
Glyma05g01690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g10190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g094000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g10190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g10190

Limit To All Plant Sequences

>Glyma17g10190.3   sequence type=transcript   gene model=Glyma17g10190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGAGGATCAGAGGAGTTACCGTGATCCATTGTTGTTCTCTCTCTCTCTAGAGTTCTTATTTCCTCTCTCTAGAATTTTCTATCCGTTCATCCCCCTCACAAATTAGGGTTTTTGCGAATCTTTTATTGTCTGAAATCGAATCCAACGTTTCAGCCATGGTTTCCGATTCAATCGCCGCCGTGCCGATTCCCTCCGCCGCAAACACCAGGAACCCGGGGAAGAAGAAGAGGACCAACAGGTCCGCGAAATTGAAGCAGTACAAAATCGATGCGCGCCGCGAGCAATGGTTATCTCAAGGTGCGGTGAAGAGCAAGGGGTACAAGGACGGTTTGGACGATGACGGCCATGCGCCGCCGTCTCCAGCGGAGGTGAAACACTCGGTGGAGCCTCTGAACACGAGGCGCAGAGGCGAAGAGGACGATGGATTGATCCATCACGACAGCGATTCGGAGTCTCCAACCAACTGCCCTGCGGGCGTGTTGTGCGGCACCGATTCGGGGACGAATTTCACCGGCAGCAGTAGCGGCGGTAGCAGCAGTAGCAGCAGCAGCAGCAGTTCCAGCAGCGGCGGGTGCTGTTCCGGGAACGTCACCGAGGTGGAGGAAGAAGAGGAAGGTGATGACGATGACGATGATGATGATGGATGTTTGGATGATTGGGAGGCTATGGCTGATGCTCTAGCAGCCGATGACAAGCGCGAAAACCCTTGTCCAGATTCGCCCCCAGTGGTTTCGCCTTCAGAGGGATCCAATTTAGGGTCTCCGAATTCGAAACCCGAGAGTGGTAGATTGTTTCCTTGGGGCTCTGGTAATAGCAGAGCGTGGAGGGCAGATGATGCCTTTCGCCCTCAGAGTTTGCCCAATTTGTCTAAGCAGCACAGTATGCCAAATCCTGATCGGCGTGGGGTGCCTTGGGGACGCGCTCCCACCCCATCCTCGTGCCCAATTTGCTGTGAGGATCTCGATTTGACGGACACGAGTTTCATGCCTTGTCTCTGTGGGTTTCGTCTTTGCCTCTTTTGCCACAAGAGGATTCTCGAGGAGGATGGGCGCTGCCCCGGTTGTAGGAAGCCCTATGAGTGTGAGCCTGTTGAGACAGAGGCCAGTGTGCTTGGAGACAGCCTCACTCTTCGGTTGGCACGTTCTTGCAGCATGATCGAGAGGTCCTGAGCCCGCCCGCAGTCTGTCCTTTTTTTGTTGCGCTGTTGCATCATCGTCTGTATTTTAGGGAAATCTAATTTTCATAGGTTTAGTTGGCCTAGTGTTATGAGGTTTTGGGCACCTTGAAATCAAGTTGTATCTCGTTTGATCTTATGGTGCATGTGGTAATGTAGAGTACTCTTGTTGGTATGTGAATACATAAGGTGGTATAGAAATTCAATACATTTGAAAATGGTTAGACAAATTCTAATGCCTCTATATTGAATATCATTTTTAATTGAACATGCTCATATTTCTGATTGTGCAAATTCAATTTTTGGTGGTGTTGCAATTTTCTATGTTTACACTCTGTCTCTCTCTTACAGTTGTATTTGTTGCACTCTGGGGCTACTTATGAAGCTATCCTGTTTCCTCATCTCTCTCCATTTAAGATATTTGTAGCTATATATTGATGAATTGAAGGTATATGGGCTGATTAAAAAAAAAAGGAATTATAGCTATTTGCTAATAATGATCATTAGTCAAGTCATAAACTATATGTTTTTCCTGTCTATTTTTCGTCTGTGAATGGTTTTTTGATTTATGGATTGTTTTTTGCTTAATGGAGGAGGGGGATGGGAGGGAAAATAAAAGCCACCCTTGGAGGGGAGTTGGAGAGCAATGTTGCCCCTCTCATTTTCCTTTCCCTCTGCTAACCAAACAGAATATTAATGTTTTATTGTCTCCACTGACAGGTAACTAAAATTTTCTCAAAAGCAAATCATTCAACTGGCCTGTGGATTGTTTCTGTCCATCAAGGATGGTTAAAAAAATCTCTGTTAGTTTGTTTTGTTTGCTTCTAGTCTTTTCATTGCATTTGCTGAAATTTCATTAATGCAAAATTAGAATTTGTTAACATGGAAGCATCTTTTTGTTGCTGGACCATCTTGCACAAACCACAAATCTGTTACATGCCATTGTTAAAGCTTGGTCCTTCTTTGCCCTATAACCGATACTCCCCTTACTTGAAAGGGATCTGCGATATCTGTTTTAATGTGAGTTAGCATTGTAAATATAGCTTCTTTCATGACATTTGAACATTGTTTTTTTTCCCATTGATTCTCTTTTAGGAACCAATATACTGGTGTTAAGTGTAAATATGAAGACAATTTCAAGTTACTGTTTTGGGGTTTGTTGTAGTGTAGACAATGGAACTGATCACATGAAAGGTACTAATGATCATTTGGCGTTGCCTTGTTAGTTTTGGGTAATACAATCTGTACTTGCATTGTGTTAATGCTCATTTGAAGATGATTTGGTCTGATGAGAAGTATAATACTTT

Coding sequences of Glyma17g10190

Limit To All Plant Sequences

>Glyma17g10190.2   sequence type=CDS   gene model=Glyma17g10190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCCGATTCAATCGCCGCCGTGCCGATTCCCTCCGCCGCAAACACCAGGAACCCGGGGAAGAAGAAGAGGACCAACAGGTCCGCGAAATTGAAGCAGTACAAAATCGATGCGCGCCGCGAGCAATGGTTATCTCAAGGTGCGGTGAAGAGCAAGGGGTACAAGGACGGTTTGGACGATGACGGCCATGCGCCGCCGTCTCCAGCGGAGGTGAAACACTCGGTGGAGCCTCTGAACACGAGGCGCAGAGGCGAAGAGGACGATGGATTGATCCATCACGACAGCGATTCGGAGTCTCCAACCAACTGCCCTGCGGGCGTGTTGTGCGGCACCGATTCGGGGACGAATTTCACCGGCAGCAGTAGCGGCGGTAGCAGCAGTAGCAGCAGCAGCAGCAGTTCCAGCAGCGGCGGGTGCTGTTCCGGGAACGTCACCGAGGTGGAGGAAGAAGAGGAAGGTGATGACGATGACGATGATGATGATGGATGTTTGGATGATTGGGAGGCTATGGCTGATGCTCTAGCAGCCGATGACAAGCGCGAAAACCCTTGTCCAGATTCGCCCCCAGTGGTTTCGCCTTCAGAGGGATCCAATTTAGGGTCTCCGAATTCGAAACCCGAGAGTGGTAGATTGTTTCCTTGGGGCTCTGGTAATAGCAGAGCGTGGAGGGCAGATGATGCCTTTCGCCCTCAGAGTTTGCCCAATTTGTCTAAGCAGCACAGTATGCCAAATCCTGATCGGCGTGGGGTGCCTTGGGGACGCGCTCCCACCCCATCCTCGTGCCCAATTTGCTGTGAGGATCTCGATTTGACGGACACGAGTTTCATGCCTTGTCTCTGTGGGTTTCGTCTTTGCCTCTTTTGCCACAAGAGGATTCTCGAGGAGGATGGGCGCTGCCCCGGTTGTAGGAAGCCCTATGAGTGTGAGCCTGTTGAGACAGAGGCCAGTGTGCTTGGAGACAGCCTCACTCTTCGGTTGGCACGTTCTTGCAGCATGATCGAGAGGTCCTGA

>Glyma17g10190.3   sequence type=CDS   gene model=Glyma17g10190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCCGATTCAATCGCCGCCGTGCCGATTCCCTCCGCCGCAAACACCAGGAACCCGGGGAAGAAGAAGAGGACCAACAGGTCCGCGAAATTGAAGCAGTACAAAATCGATGCGCGCCGCGAGCAATGGTTATCTCAAGGTGCGGTGAAGAGCAAGGGGTACAAGGACGGTTTGGACGATGACGGCCATGCGCCGCCGTCTCCAGCGGAGGTGAAACACTCGGTGGAGCCTCTGAACACGAGGCGCAGAGGCGAAGAGGACGATGGATTGATCCATCACGACAGCGATTCGGAGTCTCCAACCAACTGCCCTGCGGGCGTGTTGTGCGGCACCGATTCGGGGACGAATTTCACCGGCAGCAGTAGCGGCGGTAGCAGCAGTAGCAGCAGCAGCAGCAGTTCCAGCAGCGGCGGGTGCTGTTCCGGGAACGTCACCGAGGTGGAGGAAGAAGAGGAAGGTGATGACGATGACGATGATGATGATGGATGTTTGGATGATTGGGAGGCTATGGCTGATGCTCTAGCAGCCGATGACAAGCGCGAAAACCCTTGTCCAGATTCGCCCCCAGTGGTTTCGCCTTCAGAGGGATCCAATTTAGGGTCTCCGAATTCGAAACCCGAGAGTGGTAGATTGTTTCCTTGGGGCTCTGGTAATAGCAGAGCGTGGAGGGCAGATGATGCCTTTCGCCCTCAGAGTTTGCCCAATTTGTCTAAGCAGCACAGTATGCCAAATCCTGATCGGCGTGGGGTGCCTTGGGGACGCGCTCCCACCCCATCCTCGTGCCCAATTTGCTGTGAGGATCTCGATTTGACGGACACGAGTTTCATGCCTTGTCTCTGTGGGTTTCGTCTTTGCCTCTTTTGCCACAAGAGGATTCTCGAGGAGGATGGGCGCTGCCCCGGTTGTAGGAAGCCCTATGAGTGTGAGCCTGTTGAGACAGAGGCCAGTGTGCTTGGAGACAGCCTCACTCTTCGGTTGGCACGTTCTTGCAGCATGATCGAGAGGTCCTGA

Predicted protein sequences of Glyma17g10190

Limit To All Plant Sequences

>Glyma17g10190.2   sequence type=predicted peptide   gene model=Glyma17g10190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSDSIAAVPIPSAANTRNPGKKKRTNRSAKLKQYKIDARREQWLSQGAVKSKGYKDGLDDDGHAPPSPAEVKHSVEPLNTRRRGEEDDGLIHHDSDSESPTNCPAGVLCGTDSGTNFTGSSSGGSSSSSSSSSSSSGGCCSGNVTEVEEEEEGDDDDDDDDGCLDDWEAMADALAADDKRENPCPDSPPVVSPSEGSNLGSPNSKPESGRLFPWGSGNSRAWRADDAFRPQSLPNLSKQHSMPNPDRRGVPWGRAPTPSSCPICCEDLDLTDTSFMPCLCGFRLCLFCHKRILEEDGRCPGCRKPYECEPVETEASVLGDSLTLRLARSCSMIERS*

>Glyma17g10190.3   sequence type=predicted peptide   gene model=Glyma17g10190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSDSIAAVPIPSAANTRNPGKKKRTNRSAKLKQYKIDARREQWLSQGAVKSKGYKDGLDDDGHAPPSPAEVKHSVEPLNTRRRGEEDDGLIHHDSDSESPTNCPAGVLCGTDSGTNFTGSSSGGSSSSSSSSSSSSGGCCSGNVTEVEEEEEGDDDDDDDDGCLDDWEAMADALAADDKRENPCPDSPPVVSPSEGSNLGSPNSKPESGRLFPWGSGNSRAWRADDAFRPQSLPNLSKQHSMPNPDRRGVPWGRAPTPSSCPICCEDLDLTDTSFMPCLCGFRLCLFCHKRILEEDGRCPGCRKPYECEPVETEASVLGDSLTLRLARSCSMIERS*

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