Report for Sequence Feature Glyma17g10170
Feature Type: gene_model
Chromosome: Gm17
Start: 7596396
stop: 7598882
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g10170
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G48100 AT
Annotation by Michelle Graham. TAIR10: response regulator 5 | chr3:17759112-17760740 REVERSE LENGTH=184
SoyBase E_val: 1.00E-75 ISS
GO:0000160 GO-bp
Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system
SoyBase N/A ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0006612 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane
SoyBase N/A ISS
GO:0007623 GO-bp
Annotation by Michelle Graham. GO Biological Process: circadian rhythm
SoyBase N/A ISS
GO:0009735 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus
SoyBase N/A ISS
GO:0009736 GO-bp
Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway
SoyBase N/A ISS
GO:0009963 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process
SoyBase N/A ISS
GO:0010114 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to red light
SoyBase N/A ISS
GO:0010363 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0000156 GO-mf
Annotation by Michelle Graham. GO Molecular Function: phosphorelay response regulator activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
PTHR26402 Panther
RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM
JGI ISS
PTHR26402:SF63 Panther
TWO-COMPONENT RESPONSE REGULATOR RSTA-RELATED
JGI ISS
PF00072 PFAM
Response regulator receiver domain
JGI ISS
UniRef100_G7JNT1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Two-component response regulator ARR5 n=1 Tax=Medicago truncatula RepID=G7JNT1_MEDTR
SoyBase E_val: 4.00E-100 ISS
UniRef100_I1MTM0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTM0_SOYBN
SoyBase E_val: 3.00E-145 ISS
Proteins Associated with Glyma17g10170
Locus Gene Symbol Protein Name
RR02 Ubiquitous, Response Regulator Type-A
Expression Patterns of Glyma17g10170
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g10170
Paralog Evidence Comments
Glyma05g01730 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g10170 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g093900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g10170
Transcripts of Glyma17g10170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g10170.2 sequence type=transcript gene model=Glyma17g10170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CACCATTTATTATTTATTACGCGTCCTTCCTTCTCTCTCCCTTTCCCATCTAAATAAAACCCACCATTTTCCACTTCCATCTACTTGTGTTCTGTTGTGTACTTTCTATTCTCATAAGATAACTAACTCACTTTGTGTGATAGAGTTCTCATTCTCATGGCTATTACCGGCGATATTTTCCGGCAGAGCATAACGGAAATGCTTGCGGAGTCCCCTTCCGGTGCGCCAGAACTTCACGTTCTCGCCGTCGATGACAGCCTCGTTGATCGCAAGGTGATCGAACGGTTGCTGAAGATTTCTTCCTGCAAAGTGACGGTTGTGGAGAGTGGAACGCGCGCTCTTCAGTATCTTGGGTTGGAGGGAGAGAACGGTTCTCTTGGGTTTGATAGTGTTAAGGTTAATCTCATAATGACGGATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGGAGTCTTCTGTGTTTAGAGAGATTCCGGTGGTGATCATGTCATCGGAGAATGTTTTGACCCGAATTGATAGGTGCCTGGAGGAAGGAGCAGAGGATTTTCTGTTGAAGCCAGTCAAATTGTCAGATGTAAGACGCTTAAAAGATTTCATCATGAAAGGGAAAGTGAAGGAAGGTGAGAAAATATCTCACAAAAGAATGAGGTCAATTGATTGCAGTCCACCTCTAACTGCAACATGCTCACTATTGTCTCTTCCATGCGATCCATCACCATCATTACTCTCACCATTATCCACGAAGAAGGCTAGATTGTGATCAGAGATTGAGTAGTAGTAGTGTGCTATGTCTCCAATTTTGCCTACACTAGTGTTCAAATCAAAGCATGTAGTGTATTTTGCATTTGTTTACCAATCTACACCTTACCTTAGGAACGAGAAAGCTAATGTCAGAGTCACTAATTTTTTGGCATCTTGTTTGTCTACTGATCTTGCTTATGTACAGAGGAAATTTATCAAAATTTATAAAATAGGGCGTTATTTTGACCAACATTTATATTTTTTACATAAATACCTCGTTTTGTTTTATTTGTTTTGCATTTTGGTTTTATTTGAGCTTTTCTTGTCTCTGAA
Coding sequences of Glyma17g10170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g10170.1 sequence type=CDS gene model=Glyma17g10170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTATTACCGGCGATATTTTCCGGCAGAGCATAACGGAAATGCTTGCGGAGTCCCCTTCCGGTGCGCCAGAACTTCACGTTCTCGCCGTCGATGACAGCCTCGTTGATCGCAAGGTGATCGAACGGTTGCTGAAGATTTCTTCCTGCAAAGTGACGGTTGTGGAGAGTGGAACGCGCGCTCTTCAGTATCTTGGGTTGGAGGGAGAGAACGGTTCTCTTGGGTTTGATAGTGTTAAGGTTAATCTCATAATGACGGATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGCAGGAGTCTTCTGTGTTTAGAGAGATTCCGGTGGTGATCATGTCATCGGAGAATGTTTTGACCCGAATTGATAGGTGCCTGGAGGAAGGAGCAGAGGATTTTCTGTTGAAGCCAGTCAAATTGTCAGATGTAAGACGCTTAAAAGATTTCATCATGAAAGGGAAAGTGAAGGAAGGTGAGAAAATATCTCACAAAAGAATGAGGTCAATTGATTGCAGTCCACCTCTAACTGCAACATGCTCACTATTGTCTCTTCCATGCGATCCATCACCATCATTACTCTCACCATTATCCACGAAGAAGGCTAGATTGTGA
>Glyma17g10170.2 sequence type=CDS gene model=Glyma17g10170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTATTACCGGCGATATTTTCCGGCAGAGCATAACGGAAATGCTTGCGGAGTCCCCTTCCGGTGCGCCAGAACTTCACGTTCTCGCCGTCGATGACAGCCTCGTTGATCGCAAGGTGATCGAACGGTTGCTGAAGATTTCTTCCTGCAAAGTGACGGTTGTGGAGAGTGGAACGCGCGCTCTTCAGTATCTTGGGTTGGAGGGAGAGAACGGTTCTCTTGGGTTTGATAGTGTTAAGGTTAATCTCATAATGACGGATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGGAGTCTTCTGTGTTTAGAGAGATTCCGGTGGTGATCATGTCATCGGAGAATGTTTTGACCCGAATTGATAGGTGCCTGGAGGAAGGAGCAGAGGATTTTCTGTTGAAGCCAGTCAAATTGTCAGATGTAAGACGCTTAAAAGATTTCATCATGAAAGGGAAAGTGAAGGAAGGTGAGAAAATATCTCACAAAAGAATGAGGTCAATTGATTGCAGTCCACCTCTAACTGCAACATGCTCACTATTGTCTCTTCCATGCGATCCATCACCATCATTACTCTCACCATTATCCACGAAGAAGGCTAGATTGTGA
Predicted protein sequences of Glyma17g10170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g10170.1 sequence type=predicted peptide gene model=Glyma17g10170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAITGDIFRQSITEMLAESPSGAPELHVLAVDDSLVDRKVIERLLKISSCKVTVVESGTRALQYLGLEGENGSLGFDSVKVNLIMTDYSMPGMTGYELLKKIKQESSVFREIPVVIMSSENVLTRIDRCLEEGAEDFLLKPVKLSDVRRLKDFIMKGKVKEGEKISHKRMRSIDCSPPLTATCSLLSLPCDPSPSLLSPLSTKKARL*
>Glyma17g10170.2 sequence type=predicted peptide gene model=Glyma17g10170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAITGDIFRQSITEMLAESPSGAPELHVLAVDDSLVDRKVIERLLKISSCKVTVVESGTRALQYLGLEGENGSLGFDSVKVNLIMTDYSMPGMTGYELLKKIKESSVFREIPVVIMSSENVLTRIDRCLEEGAEDFLLKPVKLSDVRRLKDFIMKGKVKEGEKISHKRMRSIDCSPPLTATCSLLSLPCDPSPSLLSPLSTKKARL*