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Report for Sequence Feature Glyma17g10170

Feature Type:gene_model
Chromosome:Gm17
Start:7596396
stop:7598882
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G48100AT Annotation by Michelle Graham. TAIR10: response regulator 5 | chr3:17759112-17760740 REVERSE LENGTH=184 SoyBaseE_val: 1.00E-75ISS
GO:0000160GO-bp Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0007623GO-bp Annotation by Michelle Graham. GO Biological Process: circadian rhythm SoyBaseN/AISS
GO:0009735GO-bp Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus SoyBaseN/AISS
GO:0009736GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway SoyBaseN/AISS
GO:0009963GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process SoyBaseN/AISS
GO:0010114GO-bp Annotation by Michelle Graham. GO Biological Process: response to red light SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0000156GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphorelay response regulator activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR26402Panther RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM JGI ISS
PTHR26402:SF63Panther TWO-COMPONENT RESPONSE REGULATOR RSTA-RELATED JGI ISS
PF00072PFAM Response regulator receiver domain JGI ISS
UniRef100_G7JNT1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Two-component response regulator ARR5 n=1 Tax=Medicago truncatula RepID=G7JNT1_MEDTR SoyBaseE_val: 4.00E-100ISS
UniRef100_I1MTM0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTM0_SOYBN SoyBaseE_val: 3.00E-145ISS

LocusGene SymbolProtein Name
RR02 Ubiquitous, Response Regulator Type-A

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma05g01730 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g093900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma17g10170.2   sequence type=transcript   gene model=Glyma17g10170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACCATTTATTATTTATTACGCGTCCTTCCTTCTCTCTCCCTTTCCCATCTAAATAAAACCCACCATTTTCCACTTCCATCTACTTGTGTTCTGTTGTGTACTTTCTATTCTCATAAGATAACTAACTCACTTTGTGTGATAGAGTTCTCATTCTCATGGCTATTACCGGCGATATTTTCCGGCAGAGCATAACGGAAATGCTTGCGGAGTCCCCTTCCGGTGCGCCAGAACTTCACGTTCTCGCCGTCGATGACAGCCTCGTTGATCGCAAGGTGATCGAACGGTTGCTGAAGATTTCTTCCTGCAAAGTGACGGTTGTGGAGAGTGGAACGCGCGCTCTTCAGTATCTTGGGTTGGAGGGAGAGAACGGTTCTCTTGGGTTTGATAGTGTTAAGGTTAATCTCATAATGACGGATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGGAGTCTTCTGTGTTTAGAGAGATTCCGGTGGTGATCATGTCATCGGAGAATGTTTTGACCCGAATTGATAGGTGCCTGGAGGAAGGAGCAGAGGATTTTCTGTTGAAGCCAGTCAAATTGTCAGATGTAAGACGCTTAAAAGATTTCATCATGAAAGGGAAAGTGAAGGAAGGTGAGAAAATATCTCACAAAAGAATGAGGTCAATTGATTGCAGTCCACCTCTAACTGCAACATGCTCACTATTGTCTCTTCCATGCGATCCATCACCATCATTACTCTCACCATTATCCACGAAGAAGGCTAGATTGTGATCAGAGATTGAGTAGTAGTAGTGTGCTATGTCTCCAATTTTGCCTACACTAGTGTTCAAATCAAAGCATGTAGTGTATTTTGCATTTGTTTACCAATCTACACCTTACCTTAGGAACGAGAAAGCTAATGTCAGAGTCACTAATTTTTTGGCATCTTGTTTGTCTACTGATCTTGCTTATGTACAGAGGAAATTTATCAAAATTTATAAAATAGGGCGTTATTTTGACCAACATTTATATTTTTTACATAAATACCTCGTTTTGTTTTATTTGTTTTGCATTTTGGTTTTATTTGAGCTTTTCTTGTCTCTGAA

>Glyma17g10170.1   sequence type=CDS   gene model=Glyma17g10170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATTACCGGCGATATTTTCCGGCAGAGCATAACGGAAATGCTTGCGGAGTCCCCTTCCGGTGCGCCAGAACTTCACGTTCTCGCCGTCGATGACAGCCTCGTTGATCGCAAGGTGATCGAACGGTTGCTGAAGATTTCTTCCTGCAAAGTGACGGTTGTGGAGAGTGGAACGCGCGCTCTTCAGTATCTTGGGTTGGAGGGAGAGAACGGTTCTCTTGGGTTTGATAGTGTTAAGGTTAATCTCATAATGACGGATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGCAGGAGTCTTCTGTGTTTAGAGAGATTCCGGTGGTGATCATGTCATCGGAGAATGTTTTGACCCGAATTGATAGGTGCCTGGAGGAAGGAGCAGAGGATTTTCTGTTGAAGCCAGTCAAATTGTCAGATGTAAGACGCTTAAAAGATTTCATCATGAAAGGGAAAGTGAAGGAAGGTGAGAAAATATCTCACAAAAGAATGAGGTCAATTGATTGCAGTCCACCTCTAACTGCAACATGCTCACTATTGTCTCTTCCATGCGATCCATCACCATCATTACTCTCACCATTATCCACGAAGAAGGCTAGATTGTGA

>Glyma17g10170.2   sequence type=CDS   gene model=Glyma17g10170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATTACCGGCGATATTTTCCGGCAGAGCATAACGGAAATGCTTGCGGAGTCCCCTTCCGGTGCGCCAGAACTTCACGTTCTCGCCGTCGATGACAGCCTCGTTGATCGCAAGGTGATCGAACGGTTGCTGAAGATTTCTTCCTGCAAAGTGACGGTTGTGGAGAGTGGAACGCGCGCTCTTCAGTATCTTGGGTTGGAGGGAGAGAACGGTTCTCTTGGGTTTGATAGTGTTAAGGTTAATCTCATAATGACGGATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGGAGTCTTCTGTGTTTAGAGAGATTCCGGTGGTGATCATGTCATCGGAGAATGTTTTGACCCGAATTGATAGGTGCCTGGAGGAAGGAGCAGAGGATTTTCTGTTGAAGCCAGTCAAATTGTCAGATGTAAGACGCTTAAAAGATTTCATCATGAAAGGGAAAGTGAAGGAAGGTGAGAAAATATCTCACAAAAGAATGAGGTCAATTGATTGCAGTCCACCTCTAACTGCAACATGCTCACTATTGTCTCTTCCATGCGATCCATCACCATCATTACTCTCACCATTATCCACGAAGAAGGCTAGATTGTGA

>Glyma17g10170.1   sequence type=predicted peptide   gene model=Glyma17g10170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAITGDIFRQSITEMLAESPSGAPELHVLAVDDSLVDRKVIERLLKISSCKVTVVESGTRALQYLGLEGENGSLGFDSVKVNLIMTDYSMPGMTGYELLKKIKQESSVFREIPVVIMSSENVLTRIDRCLEEGAEDFLLKPVKLSDVRRLKDFIMKGKVKEGEKISHKRMRSIDCSPPLTATCSLLSLPCDPSPSLLSPLSTKKARL*

>Glyma17g10170.2   sequence type=predicted peptide   gene model=Glyma17g10170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAITGDIFRQSITEMLAESPSGAPELHVLAVDDSLVDRKVIERLLKISSCKVTVVESGTRALQYLGLEGENGSLGFDSVKVNLIMTDYSMPGMTGYELLKKIKESSVFREIPVVIMSSENVLTRIDRCLEEGAEDFLLKPVKLSDVRRLKDFIMKGKVKEGEKISHKRMRSIDCSPPLTATCSLLSLPCDPSPSLLSPLSTKKARL*







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