Glyma17g10100 - SoyBase

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Report for Sequence Feature Glyma17g10100

Feature Type:	gene_model
Chromosome:	Gm17
Start:	7558446
stop:	7560251
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g10100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G50120	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr5:20382630-20383796 REVERSE LENGTH=388	SoyBase	E_val: 1.00E-133	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005834	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG0313	KOG	Microtubule binding protein YTM1 (contains WD40 repeats)	JGI		ISS
PTHR22844	Panther	F-BOX AND WD40 DOMAIN PROTEIN	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_G7JNR9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7JNR9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MTL3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTL3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g10100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g10100

Paralog	Evidence	Comments
Glyma05g01790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g10100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g093400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g10100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g10100

Limit To All Plant Sequences

>Glyma17g10100.1   sequence type=CDS   gene model=Glyma17g10100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACACAGCACATCCTTCAACGACTCAAATAACAGCCTCTCTTCACAACGAAGCCTCGTTTCAGTTCCTTCCCTCAACTCACACTCTCAATTCCTCACTCCTTCCACCACCTCCCACACGTGCCTCACCACTCTCAAATTCCTCACCTCATCCTCCGTATACATCTCCTCCCTCACCCTTGCCGGCAAGTTCCTCTACGCAGGCTCCTCCGACAGAGAAATCAGATCCTGGAACCACACCCATTTCATCCAAAACCAAAAACCAACCACCACCACCACCACCACCACCACCAACAACAACAACAACAGCGTTGTAATTGCCGGAAAAGGTGCTGTCAAGTCCATAGTAGTTCACTCCGACAAACTCTTCACCGCCCACCAAGACAACAAAATCCGCGTCTGGAAAGTCACAAACCTTTCCCACGACCACCAGAAGTACACACGTGTGGCCACACTCCCCACGCTCGCCGACCGCGTCACCAAACTCCTCGTCCCCAAAAACCACGTGCGGATTCGCCGCCACAAAAAGTGCACCTGGGTTCACCACGTCGACACCGTCTCCTCCATCGCCCTGTCCCAAGACGGAAACTTCTTGTACTCGGTCTCATGGGACAGAACAATTAAGGTTTGGCGAACCAAAGACTTGGCGTGCTTGGAGTCCGTGCGCAACGCGCACGACGACGCCATCAACGCGGTTGCAGTCTCCTACGATGGGCACGTCTACACAGGATCCGCGGACAAGAGAATCAGGGTTTGGAAAAAACTCGAAGGCGAGAAGAAACTTTCATTAGTGGATACTTTGGAGAAACATAATTCTGGGATTAACGCGTTGGCGCTTAAAAGTGATGGCTCTGTGTTGTATTCTGGTGCATGCGATAGGTCAATATTGGTTTCGGAGAAGGGAGAGAATGGTAAATTGTTAGTGGTTGGAGCTCTTAGGGGGCATGCTAAGTCGATTTTGTGCTTGGCGGTGGTTTCGGATTTGGTGTGTAGTGGTTCGGAGGACAAAACGGTGCGTATTTGGAGAGGGGTTCAGAAGGATGAGTATTCGTGTTTAGCTGTTTTAGAAGGGCATAGGAGTCCGATTAAGAGCATAACTGCAGCGCTTGATCTTAGTCAAGACCCTTCTTCCCAAGCCACGTCTTTTCTTCTCTACAGTGCCAGTTTGGACTCTCATGTTAAGCTTTGGCAGCTTTTTCTTCCTCTTCTTTCAACTTAA

Predicted protein sequences of Glyma17g10100

Limit To All Plant Sequences

>Glyma17g10100.1   sequence type=predicted peptide   gene model=Glyma17g10100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEHSTSFNDSNNSLSSQRSLVSVPSLNSHSQFLTPSTTSHTCLTTLKFLTSSSVYISSLTLAGKFLYAGSSDREIRSWNHTHFIQNQKPTTTTTTTTTNNNNNSVVIAGKGAVKSIVVHSDKLFTAHQDNKIRVWKVTNLSHDHQKYTRVATLPTLADRVTKLLVPKNHVRIRRHKKCTWVHHVDTVSSIALSQDGNFLYSVSWDRTIKVWRTKDLACLESVRNAHDDAINAVAVSYDGHVYTGSADKRIRVWKKLEGEKKLSLVDTLEKHNSGINALALKSDGSVLYSGACDRSILVSEKGENGKLLVVGALRGHAKSILCLAVVSDLVCSGSEDKTVRIWRGVQKDEYSCLAVLEGHRSPIKSITAALDLSQDPSSQATSFLLYSASLDSHVKLWQLFLPLLST*

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