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Report for Sequence Feature Glyma17g10070

Feature Type:gene_model
Chromosome:Gm17
Start:7535662
stop:7538646
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g10070
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G47830AT Annotation by Michelle Graham. TAIR10: DNA glycosylase superfamily protein | chr3:17647069-17648346 FORWARD LENGTH=293 SoyBaseE_val: 1.00E-67ISS
GO:0006281GO-bp Annotation by Michelle Graham. GO Biological Process: DNA repair SoyBaseN/AISS
GO:0006284GO-bp Annotation by Michelle Graham. GO Biological Process: base-excision repair SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
PTHR10359Panther A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III JGI ISS
PTHR10359:SF3Panther A/G-SPECIFIC ADENINE GLYCOSYLASE JGI ISS
UniRef100_G7JNR0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ultraviolet N-glycosylase/AP lyase n=1 Tax=Medicago truncatula RepID=G7JNR0_MEDTR SoyBaseE_val: 9.00E-87ISS
UniRef100_I1MTL0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MTL0_SOYBN SoyBaseE_val: 2.00E-98ISS

Expression Patterns of Glyma17g10070
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g10070
ParalogEvidenceComments
Glyma05g01820 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g10070 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g093000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g10070
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g10070
>Glyma17g10070.2   sequence type=CDS   gene model=Glyma17g10070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTCCAGCATGCAATTACAGAGGTGAATTGTGTTTGGAGTTTTTTATTTTCTATTCGATGTGGAGGTCTAGCTCCGACTAAGGCTTCATGCATTAAGAACGTGTTGCGTTGTTTGCGCGAGAGAAGAGGTGAATTGTGTTTGGAGTATTTGCGGGACTTGTCCGTTGATGAAGTTAAGGCTGAGCTGTCTCTTTTCAAAGGAATTGGTCCCAAAACAGTGGCTTGTGTGTTGATGTTCAATCTTCAGCAGGATGATTTTCCTGTGGACACTCACATATTTGAGATTGCAAAAACCATGGGTTGGGTACCATCTGTTGCAGACAAAAATAAGTCATATATTCATCTAAACCAAAGGATACCAAATGAACTTAAGTTTGACCTGAATAGTCTTCTGTATACGAACGGGAAGCTTTGTCGCAAATGCTCCGGTAAAAAGGGTAACAAGCAAGGAAAGAAATGTGACGATAACTCCTGTCCTTTATTGAATTATGATAAAGAGTCAATTGAACTTTGA
Predicted protein sequences of Glyma17g10070
>Glyma17g10070.2   sequence type=predicted peptide   gene model=Glyma17g10070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFQHAITEVNCVWSFLFSIRCGGLAPTKASCIKNVLRCLRERRGELCLEYLRDLSVDEVKAELSLFKGIGPKTVACVLMFNLQQDDFPVDTHIFEIAKTMGWVPSVADKNKSYIHLNQRIPNELKFDLNSLLYTNGKLCRKCSGKKGNKQGKKCDDNSCPLLNYDKESIEL*






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