Glyma17g10040 - SoyBase

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Report for Sequence Feature Glyma17g10040

Feature Type:	gene_model
Chromosome:	Gm17
Start:	7498686
stop:	7503899
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g10040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62570	AT	Annotation by Michelle Graham. TAIR10: Calmodulin binding protein-like \| chr5:25114934-25116967 FORWARD LENGTH=494	SoyBase	E_val: 4.00E-159	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0052542	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PF07887	PFAM	Calmodulin binding protein-like	JGI		ISS
UniRef100_G7JNV1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin binding protein n=1 Tax=Medicago truncatula RepID=G7JNV1_MEDTR	SoyBase	E_val: 8.00E-173	ISS
UniRef100_UPI0002339E24	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339E24 related cluster n=1 Tax=unknown RepID=UPI0002339E24	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g10040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g10040

Paralog	Evidence	Comments
Glyma05g01860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g10040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g092700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g10040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g10040

Limit To All Plant Sequences

>Glyma17g10040.2   sequence type=CDS   gene model=Glyma17g10040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCTCGATTTCTATTTCCAACAACACCGCAGCGTCGTAGAATTACTACTCTCTTTCTTTCTTCGTCTCTTTGTTCCTTCTTCGGCCATGTCGCTCAAGCGCCGCCCCGATGATGGGAAGACTCCAGACGACAAGCGTAGAAAGCCTCCTCCTTTCTCCAGTGTGGTGCGTGACGTGATGAAGTTACAATCACTCGGGCATTTGCTGGAGCCAATTCTAGAGCCCTTGGTTCGAAAAGTGGTTAAGGAAGAAGTTGAAGCTGCCTTAAAGAGGCATTTAACCAGCATGAAACAGACCTGTGGAAAGGAGTTTCATACTACTGAATTAAGAAATTTGCAGCTGCAGTTTGAAAACAGCATTTGTCTTCCTGTCTTTACTGGAGCTCGAATTGAAGGAGAGGATGGCTCCAACTTAAGAATAGGTTTAGTTGATGCCCTAACTGGGAAGGTTGTTAGTACAGGACCTGAATCGTCGGCTAAGGTGGAAATTGTAGTCCTTGAGGGTGATTTTGAAGAAGAAAGCGAAACTTGGATGCCTGAAGAGTTCAAGAGCAATATTGTGAGAGAGAGGGAAGGAAAAAAGCCCCTTCTTACAGGAGATGTAATTTTATATCTTAAAGATGGGATTGGTATGGTGAGTGAAATTTCATATACAGATAATTCAAGCTGGACAAGGAGCCGTAGGTTCAGGCTTGGGGCAAGAGTTGTGGACAACTTTGATGGTGTTAGAATAAGAGAAGCAAAGACAGAATCATTCATTGTCAGGGATCACAGAGGAGAATTGTACAAGAAGCACCATCCTCCTGGTCTGTCTGATGAAGTTTGGAGATTGGAAAAAATAGGCAAGGATGGAGCTTTCCACAAGCGCTTGAGTCGGGAAAAGATCGTTACTGTTAGAGAGTTTCTCACACTTCTGAATCTGGATCCAGCAAAGCTGCGCAGTATACTGGGCACTGGGATGTCTGCAAAGATGTGGGAAGTAACTGTGGAGCATGCTCGAACTTGTGTACTTGATACAACGAGGCACGTGTACTTCCCTTCTAATTCTCAAGAACCTGGTGTGGTCTTCAATGCTGTGGGACAAGTGACAGGACTGCTTTCTGAATGCGATTATGTCACAGTAGATAAGCTGACTGAAACTGAAAAGGCTGATGCTCAAAACGCAGTTACTGCTGCATTAAGACAAGGGGAGAAATACGCAACTTTCGAAGATGAAGACTCTCTCATGGATGGGTCTTCACACTTAACTAATGTACTTTACTCCCCAAGCTCTCCCAAGACTGAGGGATCAAGTGCCAACAAGATTTTGGCTCCCCAAAAGACTGGAGGATTCAATTACCCGCCAGCAAATGCCTCTTCCCCAGATATCATGTCATCCATTTATTCTGTTGGTGGAACTAGTAGCTTGGATGACTATTGCTTGCCTAATTTTGACAGCATGGGCCTTAGATATGATCAGACCCTCAGTTTTCCAGTCCAAGTTTCCAACTCTTTGATCTGTGACACTGATTCAATGGCTCATGCTTTTAGTGATGAAGACCATCTGCAGTTTTTTGATACTGATCTTCAATCGCATGTTCAAGCAGATCTACAGAGTGCTATTGATAGCTTCATGTTGGCACGTCCCACAGCCAATGGTGGTGCACAAAGGAGATGGAGAAAGGTATGCAATGTCCTAAAATGGTTCATGGTTAGGAAACGAGGAAACCAAATACAGGTAAGGTTGTGA

Predicted protein sequences of Glyma17g10040

Limit To All Plant Sequences

>Glyma17g10040.2   sequence type=predicted peptide   gene model=Glyma17g10040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLDFYFQQHRSVVELLLSFFLRLFVPSSAMSLKRRPDDGKTPDDKRRKPPPFSSVVRDVMKLQSLGHLLEPILEPLVRKVVKEEVEAALKRHLTSMKQTCGKEFHTTELRNLQLQFENSICLPVFTGARIEGEDGSNLRIGLVDALTGKVVSTGPESSAKVEIVVLEGDFEEESETWMPEEFKSNIVREREGKKPLLTGDVILYLKDGIGMVSEISYTDNSSWTRSRRFRLGARVVDNFDGVRIREAKTESFIVRDHRGELYKKHHPPGLSDEVWRLEKIGKDGAFHKRLSREKIVTVREFLTLLNLDPAKLRSILGTGMSAKMWEVTVEHARTCVLDTTRHVYFPSNSQEPGVVFNAVGQVTGLLSECDYVTVDKLTETEKADAQNAVTAALRQGEKYATFEDEDSLMDGSSHLTNVLYSPSSPKTEGSSANKILAPQKTGGFNYPPANASSPDIMSSIYSVGGTSSLDDYCLPNFDSMGLRYDQTLSFPVQVSNSLICDTDSMAHAFSDEDHLQFFDTDLQSHVQADLQSAIDSFMLARPTANGGAQRRWRKVCNVLKWFMVRKRGNQIQVRL*

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