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Report for Sequence Feature Glyma17g10020

Feature Type:gene_model
Chromosome:Gm17
Start:7485360
stop:7487059
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g10020
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G50090AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:20369961-20370878 FORWARD LENGTH=153 SoyBaseE_val: 1.00E-45ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_C6T021UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T021_SOYBN SoyBaseE_val: 6.00E-130ISS
UniRef100_Q9XIJ9UniRef Annotation by Michelle Graham. Most informative UniRef hit: T10O24.15 n=2 Tax=Arabidopsis thaliana RepID=Q9XIJ9_ARATH SoyBaseE_val: 5.00E-36ISS

Expression Patterns of Glyma17g10020
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g10020 not represented in the dataset
Glyma17g10020 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g10020
ParalogEvidenceComments
Glyma05g01880 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g10020 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g092500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g10020
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g10020
>Glyma17g10020.1   sequence type=CDS   gene model=Glyma17g10020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAATTGCCAAGCCGTTGACACTGCAACTCTAGTGATTCAGCAACCCAATGGGAAAGTAGAAAGGTTGTATTGGCCTGTAAGTGCTAGTGAAGTGATGAAGACCAACCCTGATCACTATGTTGCTCTTCTTATCTCCACCACATTGTGCTCATCCAAGGACAATGAAAATCGCTCAAATAAGAGTGACAACACCAACACCACCAACCCTGTTCGCCTTACCCGCATCAAGCTTCTCAAGCCAACAGATACCCTTGTGCTTGGCCAAGTTTATAGACTAATCTCAGCTCAAGAGGTTATGAAGGGTCTTTGGGCAAAGAAACAAGCAAAGATGAAGAGAAACTTGTCAGATTCAGCACAAAAGCCAAATCTGATGAAGGAAAGGACAGACAAATCAGCAAGGGGGTCTGAACCGGAGGACAACCAGGAAACCAAAGCTGAAAGACACGGGTCAAGGACAACATCAACTAATAATGCTTCTAGTGCCACAGCTAAGTCAAGAACATGGCAACCCTCTTTAAAAAGCATCTCAGAGGCAGCCAGCTGA
Predicted protein sequences of Glyma17g10020
>Glyma17g10020.1   sequence type=predicted peptide   gene model=Glyma17g10020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNCQAVDTATLVIQQPNGKVERLYWPVSASEVMKTNPDHYVALLISTTLCSSKDNENRSNKSDNTNTTNPVRLTRIKLLKPTDTLVLGQVYRLISAQEVMKGLWAKKQAKMKRNLSDSAQKPNLMKERTDKSARGSEPEDNQETKAERHGSRTTSTNNASSATAKSRTWQPSLKSISEAAS*






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