SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G23820 | AT | Annotation by Michelle Graham. TAIR10: spermidine synthase 1 | chr1:8420278-8422724 FORWARD LENGTH=378 | SoyBase | E_val: 1.00E-131 | ISS |
| GO:0008295 | GO-bp | Annotation by Michelle Graham. GO Biological Process: spermidine biosynthetic process | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004766 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: spermidine synthase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG1562 | KOG | Spermidine synthase | JGI | ISS | |
| PTHR11558 | Panther | SPERMIDINE SYNTHASE | JGI | ISS | |
| PTHR11558:SF11 | Panther | PUTRESCINE N-METHYLTRANSFERASE | JGI | ISS | |
| PF01564 | PFAM | Spermine/spermidine synthase | JGI | ISS | |
| UniRef100_C6TD35 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TD35_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I0E1Y4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Spermidine synthase n=1 Tax=Eleutherococcus senticosus RepID=I0E1Y4_9APIA | SoyBase | E_val: 2.00E-136 | ISS |
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Glyma17g10010 not represented in the dataset |
Glyma17g10010 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g092400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g10010.2 sequence type=transcript gene model=Glyma17g10010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTCCCTTTTCAGATCCTCTCCTCGATTTGCAAACGCTCATCAAATCTCAGCATCACCATCACCAAACCTGTAATCGAAGCAGAAATTCCAAAAATCCCAGCATCAACATCACAAACTAACAACAACAGTACAATATTTAGGATCAAGAAGCCAAAACTAGATTCCGCGATGGTCGTTGATTGTGTGCAAGAGAGTCATGTCGAGAACATGGGAAGGTGATTGTGGGTGCGGCGTTGCGACAGCTAACAGATCGGTGGCCGCGGAGTTGCGACTGCTAACATATGGGCGACCGGGGCGTTGCGGCGCAAGTCCATTATGCTCACTCTGCGTTTTTCTCCGAACTTTTGCCTCGTTCTTGAAATTCTTTTCCTTTCACTCATTGCAGCTATATATGTGATACCGGGTGAAGGCGTGATAGATGCATTGGGGCATGCTTTTAATTTCCTAGATCTCCCAAACAAATTGTAGCATAAGTCCCATGGCCAAAGAGACTAGTGTTGTTTATCTATATCCCAGCAAATCACAAGTTTGGGGTGAGAATTTTGATCATAAAAAACTTGTAATAACAACACTAGCTGCTAATGGAAAGAAGGAGGAGAGTAATGGAGCACCTAATGACACATATCCTGCGTTTCCCGGGTGGTATGCTGATGTTTCCTGGCCAGGAGAAGCACACACATATAAAATAGAAAAGATTCTATTCCACGGGAAATCAGAATTCCAAGAGCTTCTTGTATTTGAGTCTTCTAGACAAGGCAAGGTTGCAATTCTTGATGGGCATATCCAGCTGACAGAAAACGATGAATTTGCTTACCAAGAGATGCTCACTCACCTTGCACTCTGTTCCATTCCAGATCCAAAGAAGGTGCTGCTTATTGGAGGGGGAGATGGTGGAATTCTTAGGGAAATATCACGCCATTCTTCTGTTGAGCATATTGATATATGCGAACTAGACCAAATGGTCATTGATGTTTATTCGGAGTTTTTCCCGGATATAGCTGTTGGTTACGAGGATCCCCGAGTGCATGTTCATATCAGCGATGGAGTTGCGTTTATCAATTCTGTTCCTGAGGGCACTTACGATGTCATTATATCGGATGCTTTTCCAGCAATGGGGCATAGTGCTGATGTTCTTGCTGATGAATGCTTCTTAGAATCAGTAGCAAAGGCTCTTCGACCCGGAGGAGTGTTCTCTGCTCCAGCAGACAGCCTGTGGCATAAGAACTTTGTGGTTGCAGACACCATAGCAAATTGCAAGAAGATATTCAAAGGCTCCGTTAACTATGCTTGGACCACGGTTCCTACATATGCAAGTGGGGTGATTGGATTCATGCTTTGCTCTACGGAGGGTCCACCAGTGAACTTCAAACATCCAATAAATAAATTGAATCCAGAGAAAAATGGGGTGGCAAAGGGACCTACTAAGTTTTATAACCCAGAGGTAATCTTTCAGATCACTTGCTTGTTTTGCTTTATAAGAATTTAAATTTATTCCTATCTTGCCTTTTATTTTTGTTACTACTTCAGATCCATGCTGCTGCATTCTGTCTGCCTTCTTTTGTGGACAAGGTTGATTGATCCAACAGACATTCATAAATGACTCGGTAGCATTAAGGAATTGCTGTTAGTTACCCTTTGTTTTTGCTGTGTCGTTCTGCATATTTATGATATTATCCTTTTATTATGTTATTTAGTTTTATTTTATATTCCCTAAAATATTAGATGTTACACACGTGTATGATTATCATCTAATGTAAGGTTTGCACCTATTGAGGTATCAATGAAATGAAATCTGAAATTTAGTTTTTTCTCTTTAGCTTTAATGGTGTTTTTTTAGGAGTAGAGTGGTGTAGACTTTGCATCCTAACAATTTATTTTATGGGTAAAAGGTTGCACATGCAAAACTACTTCAAGTTTATTTATAACAATGAGAAGTTGATAACCTGCCAAGTTGTTTCTTAATTGTTACTCCTGATTATCACTCAACATATAATTTATAAAAGGTTGCGCATACAAAACTATTACAAGTTTATTAACGCCTACAAGAGAGGTACATTATAACATGGAGTTAAATATCAAAAGAAG
>Glyma17g10010.1 sequence type=CDS gene model=Glyma17g10010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCAAAGAGACTAGTGTTGTTTATCTATATCCCAGCAAATCACAAGTTTGGGGTGAGAATTTTGATCATAAAAAACTTGTAATAACAACACTAGCTGCTAATGGAAAGAAGGAGGAGAGTAATGGAGCACCTAATGACACATATCCTGCGTTTCCCGGGTGGTATGCTGATGTTTCCTGGCCAGGAGAAGCACACACATATAAAATAGAAAAGATTCTATTCCACGGGAAATCAGAATTCCAAGAGCTTCTTGTATTTGAGTCTTCTAGACAAGGCAAGGTTGCAATTCTTGATGGGCATATCCAGCTGACAGAAAACGATGAATTTGCTTACCAAGAGATGCTCACTCACCTTGCACTCTGTTCCATTCCAGATCCAAAGAAGGTGCTGCTTATTGGAGGGGGAGATGGTGGAATTCTTAGGGAAATATCACGCCATTCTTCTGTTGAGCATATTGATATATGCGAACTAGACCAAATGGTCATTGATGTTTATTCGGAGTTTTTCCCGGATATAGCTGTTGGTTACGAGGATCCCCGAGTGCATGTTCATATCAGCGATGGAGTTGCGTTTATCAATTCTGTTCCTGAGGGCACTTACGATGTCATTATATCGGATGCTTTTCCAGCAATGGGGCATAGTGCTGATGTTCTTGCTGATGAATGCTTCTTAGAATCAGTAGCAAAGGCTCTTCGACCCGGAGGAGTGTTCTCTGCTCCAGCAGACAGCCTGTGGCATAAGAACTTTGTGGTTGCAGACACCATAGCAAATTGCAAGAAGATATTCAAAGGCTCCGTTAACTATGCTTGGACCACGGTTCCTACATATGCAAGTGGGGTGATTGGATTCATGCTTTGCTCTACGGAGGGTCCACCAGTGAACTTCAAACATCCAATAAATAAATTGAATCCAGAGAAAAATGGGGTGGCAAAGGGACCTACTAAGTTTTATAACCCAGAGATCCATGCTGCTGCATTCTGTCTGCCTTCTTTTGTGGACAAGGTTGATTGA >Glyma17g10010.2 sequence type=CDS gene model=Glyma17g10010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCAAAGAGACTAGTGTTGTTTATCTATATCCCAGCAAATCACAAGTTTGGGGTGAGAATTTTGATCATAAAAAACTTGTAATAACAACACTAGCTGCTAATGGAAAGAAGGAGGAGAGTAATGGAGCACCTAATGACACATATCCTGCGTTTCCCGGGTGGTATGCTGATGTTTCCTGGCCAGGAGAAGCACACACATATAAAATAGAAAAGATTCTATTCCACGGGAAATCAGAATTCCAAGAGCTTCTTGTATTTGAGTCTTCTAGACAAGGCAAGGTTGCAATTCTTGATGGGCATATCCAGCTGACAGAAAACGATGAATTTGCTTACCAAGAGATGCTCACTCACCTTGCACTCTGTTCCATTCCAGATCCAAAGAAGGTGCTGCTTATTGGAGGGGGAGATGGTGGAATTCTTAGGGAAATATCACGCCATTCTTCTGTTGAGCATATTGATATATGCGAACTAGACCAAATGGTCATTGATGTTTATTCGGAGTTTTTCCCGGATATAGCTGTTGGTTACGAGGATCCCCGAGTGCATGTTCATATCAGCGATGGAGTTGCGTTTATCAATTCTGTTCCTGAGGGCACTTACGATGTCATTATATCGGATGCTTTTCCAGCAATGGGGCATAGTGCTGATGTTCTTGCTGATGAATGCTTCTTAGAATCAGTAGCAAAGGCTCTTCGACCCGGAGGAGTGTTCTCTGCTCCAGCAGACAGCCTGTGGCATAAGAACTTTGTGGTTGCAGACACCATAGCAAATTGCAAGAAGATATTCAAAGGCTCCGTTAACTATGCTTGGACCACGGTTCCTACATATGCAAGTGGGGTGATTGGATTCATGCTTTGCTCTACGGAGGGTCCACCAGTGAACTTCAAACATCCAATAAATAAATTGAATCCAGAGAAAAATGGGGTGGCAAAGGGACCTACTAAGTTTTATAACCCAGAGGTAATCTTTCAGATCACTTGCTTGTTTTGCTTTATAAGAATTTAA
>Glyma17g10010.1 sequence type=predicted peptide gene model=Glyma17g10010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKETSVVYLYPSKSQVWGENFDHKKLVITTLAANGKKEESNGAPNDTYPAFPGWYADVSWPGEAHTYKIEKILFHGKSEFQELLVFESSRQGKVAILDGHIQLTENDEFAYQEMLTHLALCSIPDPKKVLLIGGGDGGILREISRHSSVEHIDICELDQMVIDVYSEFFPDIAVGYEDPRVHVHISDGVAFINSVPEGTYDVIISDAFPAMGHSADVLADECFLESVAKALRPGGVFSAPADSLWHKNFVVADTIANCKKIFKGSVNYAWTTVPTYASGVIGFMLCSTEGPPVNFKHPINKLNPEKNGVAKGPTKFYNPEIHAAAFCLPSFVDKVD* >Glyma17g10010.2 sequence type=predicted peptide gene model=Glyma17g10010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKETSVVYLYPSKSQVWGENFDHKKLVITTLAANGKKEESNGAPNDTYPAFPGWYADVSWPGEAHTYKIEKILFHGKSEFQELLVFESSRQGKVAILDGHIQLTENDEFAYQEMLTHLALCSIPDPKKVLLIGGGDGGILREISRHSSVEHIDICELDQMVIDVYSEFFPDIAVGYEDPRVHVHISDGVAFINSVPEGTYDVIISDAFPAMGHSADVLADECFLESVAKALRPGGVFSAPADSLWHKNFVVADTIANCKKIFKGSVNYAWTTVPTYASGVIGFMLCSTEGPPVNFKHPINKLNPEKNGVAKGPTKFYNPEVIFQITCLFCFIRI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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