Glyma17g09990 - SoyBase

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Report for Sequence Feature Glyma17g09990

Feature Type:	gene_model
Chromosome:	Gm17
Start:	7440186
stop:	7446905
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g09990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G48050	AT	Annotation by Michelle Graham. TAIR10: BAH domain ;TFIIS helical bundle-like domain \| chr3:17734270-17739412 REVERSE LENGTH=1613	SoyBase	E_val: 0	ISS
GO:0006351	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0035278	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of translation involved in gene silencing by miRNA	SoyBase	N/A	ISS
GO:0000932	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasmic mRNA processing body	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PTHR15141	Panther	ELONGIN A-RELATED	JGI		ISS
PTHR15141:SF6	Panther	gb def: Zgc:55573	JGI		ISS
PF08711	PFAM	TFIIS helical bundle-like domain	JGI		ISS
UniRef100_B9RB66	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RB66_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MTJ9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTJ9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g09990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g09990

Paralog	Evidence	Comments
Glyma05g01910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g09990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g092200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g09990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g09990

Limit To All Plant Sequences

>Glyma17g09990.1   sequence type=CDS   gene model=Glyma17g09990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCCAGGTGGTCGATCTCCTAAGCCAGTGAGTAGTCCAACATCAACATCACAGCTAAAATCTGGTTCAGATAGTGTCCAGAACAGTGTTTCTTCCTTTTCTTCTCATGTTAAGGGTAGGAAAAGGGAGAGAGTAGATAAAGGGCAAGAATCTGTAAAGCGAGATCGTTCAACCAAAATTGATGATGGAGATTCTGGTCATTTTAAGCAGGATAGCATTTTGAAGACAGAGATTGCCAAAGTAACAGAAAAGGGAGGCCTTATTGATACTGAAGGGGTTGAGAAATTAGTGCAGCTGATGGTTCCAGATGGAAATGAGAAAAAGATTGATTTAGCTAGCCGGTCAATGCTTGCAGCTGTAATTGCAGCAACAGATAAATTTGATTGCCTTAGTCGGTTTGTGCAACTAAAGGGTTTGCCTATATTTGATGAATGGCTCCAAGAGGCTCATAAAGGGAAGATTGGTGATGGTCTTGGGTCTAGAGATGGTGATAAATCTGTTGATGACTTTCTTTTTGTATTACTCCGAGCGCTAGATAAGCTTCCAGTAAACCTTCAGGCTCTACAAGCTTGTAACATTGGTAAATCTGTGAATCATTTGCGAACTCATAAAAACTTGGAAATTCAGAAGAAAGCAAGGGGCTTAGTTGACACATGGAAAAAACGTGTTGAAGCTGAAATGATTATAAATGATGCTAGGTCTGGTTCAGTTCAGACTGTCCCCTGGCCAGCCAGACAACGGCTTTCTGAAGTTGCTCAAGGTGGGAATAAACATTCGAGTGGGTCAGCTGATGTTGCCATGAAGAGCTCAGTTACACAGCTTTCTGCATCCAAAACTGCCTCTGCAAAGATTGTCCCAGGAGAGAATACAAGATCTACATCTGCATCTCCAGGGTCTACGAAATCAGTGCCTTCACCTGCACCCGCAACTGCAAACTTGAAAGATGGACAGCCCTGTGTTGCCACTGCTAGTGGTTCCTTTGATCTTCCTGTGGCAAATGCAAGGGATGAGAAAAGTAGCAGTTCTAGTCCATCTCACAACAGTCAATCTTATTCCAGTGATCATGTGAAAGCTGGGGGTCTCTCAGGAAAGGAGGATGCCAGGAGCTCTACTGCAATGAGTGTGAATAAGGTATCGGGAGGCTCTTCACGGCACCGAAAATCTATGAAGGGATTTCCGGGTTCAACTCCATCTAGAAGGCAAAGGGAAACTGGGTCGAGGCAGAATTCCTCACACAAAAATTTAATTTCTGAGAAAATATCTCAATCTGGATTAAGGGAAAAAGCAAATGATGGAACTACTCTTGAGGGGCATACTCCGAAGCTGATTGTTAAGATCCAAAACCGAAGTCGAAGTCCTGCACAAAGTGCCACTGCAGGTTCTTCTGATGATCCTGCAATCATGAACAGTCGAGCTTCATCTCCTGTTCTTTCAGAGAAGCACGATCAGTTTGACCGCTGCTCAAAGGAAAAGAGTGATTTTTATCGAGCTAATATTGGTGCAGACATTTATACAGAATCGTGGCAGAGTAACGATTTCAAAGATGTATTGACTGGTTCTGATGAGGGTGATGGATCACCAGAAGCCATTACTGATGAACAGTGTAGGACTGGTGAGGATTGTAAGAAAGTATTAGATGTATCAAAGGCAGCTTCATCATCATCTGGGAATGAAAGTAGAGCCAGGAATTTGCAGGATGCTTCTTACAGCTCCATCAATGCTCTTATTGAAGGTGTTAAGTACACTGAAGCTGATGATGTTGGAATGAATCTTCTTGCTAATGTGGCTGCTGGAGAGATCTCAAAATCTGAATTGGGAATGCCAGTTGGATCCCCTGAAAAAGACACCACTACTATTGAACAGTCATATGCAGGTGATGCTGCAGTAGTCAAGTCCTCTGAAGAGTATCTTGTTCAGGATAAGTGCTACACTAATGTTGAACATTCGAAGCAGGATTCTAGACCTGGTGATTTAGGGGCAGATGATGATATTCTTGCATCTGAAGGGAAAGCTACAGGAGAACACAATACATCTAGTATGGATTTATGGGTTACTGAAACTAGTTTAGAAAGCAAAGGAAAATTAATTGAAAAATCATCTGGTACATCATCTGCTGGCATTCCTGAAAGCACCATTCAAGAAGTCCGAGATAGTGACTCTAGCAAACTGGTAAAGGAAAAGAAGGTTGTTGTGAGAGTGGATGCAGTTGGTAATGTTGATGTTAAGGTCAATGTTGTTGCAAGCGAAAGTGAAACAGAGGCAATTGAAAATTTTTCGTGCACCTGTGAAGTAGTTGATGTCAAGTGTGATAACCGTGCTTCTGAAGGACTAAGCGGTGACAAAGAGACAGCTGGCAAGTCTCCTGCCATTCGCATGTCGTCTGACTATGTAATAGCAACAGATGAGAATGCACCCCAATCATCTGGTGACATTGTTGATAAGGTTCTTGAACACGTAAATGAAAGGGAATCTGAAAAAAATGATGATATGGTTGCTCAGGATCATGCTAAGGAGTCCATAAAGCAAAAAAATGAGTCTGAAAATGATGCTATTATGGTGCCCAAGAACAGAGGTTTATGTTCAGGTGCGACTGGTCTTGATGCTGAATACGTGGAAGAGAATTCAGGTACAAAAGAGGTTTGTGACCAAGTTGCAGGAGCAGGACAGATAGTGCACACAGATTTACCTAGCTTTCCTTCACGAGAAATGGATCAGTGTTCAGGTCATAAGGATTCAAAATTGACTGCCATGGAATCAGAGGAAGCAGAGGAATGCACCTCTACCACTGGAGATACCTCTTCTGCGTCTGTTGCTGGTGTCTCAGAAGTGGACACAAAAGTTGAATTTGATTTAAATGAAGGGTTCAATGCAGATGATGGGAAATGTAGTGAGATGCCTGGGTCTACACCTGCTGCAAGATTGGTCAGTCCTGTTCCATTTTCTGCTTCATCCATGTCTTTTGGTATTCTCTCGATCACAGTAGCTGCTGCTGCAAAGAGCCCCTTTGTGGCACCTGAAGATTTATTGAAAAGTAAAAAGGAGCTTGGTTGGAAGGGATCTGCTGCTACTAGTGCATTTCGGCCAGCTGAGCCCAGGAAAGTTATGGAAATTCCTCTTGATATGTCAACTACCCCTATTCCTAATGATGAAGCTAGAAAGCAGAGCCGGGCACCATTGGATTTTGACTTGAATGTTTCTGATGAAGTAATACTTGATGATGTTTCTTCCCAAAATTGTGCTCGTCAGACTGATTGTGGAACTCATTCAGACAATGGGCATGATCCAAATAAATCAATGGCCTCACATGTTAGTTGTTCTGGAGGTTTAGGTCTTGACTTGAACTTAGTGGATGGAGCTTCTGATGTGGGTAACTGCACCTTAAGTAGTAGTCATAAAATGGATGTACCACTTATGCAGGTGAAATCAGCAGCCAGTGGTCCTCCAAATGGAGAGATGAGTTTCCGCAGGGATTTCGATCTGAATGATGGACCTGTAGTTGATGAAGTCACCTCTGAACCTTTGATGTCCACACAACCCGCTAGGAATAGTGTACCATCTCAACCACCCATTTCTGGACTTAGGATGAGTAATGCAGAAGTAGGCAACTTCTCTTCATGGTTTCCTTCCACTGCGAACACCTATTCAGCGGTAACAATATCTTCAATTATGTCTGATAGAGGTGATAGGTCCTTTTCAATTGTTGCCCCTAATGGGCCACAAAGGATGTTGGGTCCTGCAACTGGTAGCAATCCATTTGGACCTGATATTTATAAGGGGGCAGTTTTGTCTTCTTCTCCTGCAGTGCCATATCAATCTGCACCATTTCAGTATCCTGTCTTCCCTTTCAATTCCAGCTTTCCTCTTCCATCAGCATCATTTTCTGGTGGATCAACTCCTTATGTAGATACAACTTCAGGAGGTAGGCTTTGCTTCCCTGCAGTAAATTCACAACTTATAGGTTCTGTTGGTAATGTTTCAGTCCATTACCCCAGGCCTTACGTTGTTAGTCTCCCAGATGGTAGCAATAGTAGCAGTGCTGAGAACTGTAGGAGAAGGACAAGGCAGGGTTTAGATCTTAATGCTGGACCTGGTTCAAACTTAGAGGGGAGAGATGATAGCTCACCTCTTGTACCACGGCAACTTTCTGTTGCTAGTTCGCAGGCCCAACTTGAAGAGCAAGCACGGATCTTTCACTTAAGCAGTGATGTTCTTAAAAGGAAGGAACCTGATGGGGGATGGGATGGCTACAAGCAAACATCATGGCAGTACCATAATTTGTAA

Predicted protein sequences of Glyma17g09990

Limit To All Plant Sequences

>Glyma17g09990.1   sequence type=predicted peptide   gene model=Glyma17g09990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQPGGRSPKPVSSPTSTSQLKSGSDSVQNSVSSFSSHVKGRKRERVDKGQESVKRDRSTKIDDGDSGHFKQDSILKTEIAKVTEKGGLIDTEGVEKLVQLMVPDGNEKKIDLASRSMLAAVIAATDKFDCLSRFVQLKGLPIFDEWLQEAHKGKIGDGLGSRDGDKSVDDFLFVLLRALDKLPVNLQALQACNIGKSVNHLRTHKNLEIQKKARGLVDTWKKRVEAEMIINDARSGSVQTVPWPARQRLSEVAQGGNKHSSGSADVAMKSSVTQLSASKTASAKIVPGENTRSTSASPGSTKSVPSPAPATANLKDGQPCVATASGSFDLPVANARDEKSSSSSPSHNSQSYSSDHVKAGGLSGKEDARSSTAMSVNKVSGGSSRHRKSMKGFPGSTPSRRQRETGSRQNSSHKNLISEKISQSGLREKANDGTTLEGHTPKLIVKIQNRSRSPAQSATAGSSDDPAIMNSRASSPVLSEKHDQFDRCSKEKSDFYRANIGADIYTESWQSNDFKDVLTGSDEGDGSPEAITDEQCRTGEDCKKVLDVSKAASSSSGNESRARNLQDASYSSINALIEGVKYTEADDVGMNLLANVAAGEISKSELGMPVGSPEKDTTTIEQSYAGDAAVVKSSEEYLVQDKCYTNVEHSKQDSRPGDLGADDDILASEGKATGEHNTSSMDLWVTETSLESKGKLIEKSSGTSSAGIPESTIQEVRDSDSSKLVKEKKVVVRVDAVGNVDVKVNVVASESETEAIENFSCTCEVVDVKCDNRASEGLSGDKETAGKSPAIRMSSDYVIATDENAPQSSGDIVDKVLEHVNERESEKNDDMVAQDHAKESIKQKNESENDAIMVPKNRGLCSGATGLDAEYVEENSGTKEVCDQVAGAGQIVHTDLPSFPSREMDQCSGHKDSKLTAMESEEAEECTSTTGDTSSASVAGVSEVDTKVEFDLNEGFNADDGKCSEMPGSTPAARLVSPVPFSASSMSFGILSITVAAAAKSPFVAPEDLLKSKKELGWKGSAATSAFRPAEPRKVMEIPLDMSTTPIPNDEARKQSRAPLDFDLNVSDEVILDDVSSQNCARQTDCGTHSDNGHDPNKSMASHVSCSGGLGLDLNLVDGASDVGNCTLSSSHKMDVPLMQVKSAASGPPNGEMSFRRDFDLNDGPVVDEVTSEPLMSTQPARNSVPSQPPISGLRMSNAEVGNFSSWFPSTANTYSAVTISSIMSDRGDRSFSIVAPNGPQRMLGPATGSNPFGPDIYKGAVLSSSPAVPYQSAPFQYPVFPFNSSFPLPSASFSGGSTPYVDTTSGGRLCFPAVNSQLIGSVGNVSVHYPRPYVVSLPDGSNSSSAENCRRRTRQGLDLNAGPGSNLEGRDDSSPLVPRQLSVASSQAQLEEQARIFHLSSDVLKRKEPDGGWDGYKQTSWQYHNL*

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