SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G48050 | AT | Annotation by Michelle Graham. TAIR10: BAH domain ;TFIIS helical bundle-like domain | chr3:17734270-17739412 REVERSE LENGTH=1613 | SoyBase | E_val: 0 | ISS |
| GO:0006351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0035278 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of translation involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0000932 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasmic mRNA processing body | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| PTHR15141 | Panther | ELONGIN A-RELATED | JGI | ISS | |
| PTHR15141:SF6 | Panther | gb def: Zgc:55573 | JGI | ISS | |
| PF08711 | PFAM | TFIIS helical bundle-like domain | JGI | ISS | |
| UniRef100_B9RB66 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RB66_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MTJ9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTJ9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g09990 not represented in the dataset |
Glyma17g09990 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g01910 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g092200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g09990.1 sequence type=CDS gene model=Glyma17g09990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGCCAGGTGGTCGATCTCCTAAGCCAGTGAGTAGTCCAACATCAACATCACAGCTAAAATCTGGTTCAGATAGTGTCCAGAACAGTGTTTCTTCCTTTTCTTCTCATGTTAAGGGTAGGAAAAGGGAGAGAGTAGATAAAGGGCAAGAATCTGTAAAGCGAGATCGTTCAACCAAAATTGATGATGGAGATTCTGGTCATTTTAAGCAGGATAGCATTTTGAAGACAGAGATTGCCAAAGTAACAGAAAAGGGAGGCCTTATTGATACTGAAGGGGTTGAGAAATTAGTGCAGCTGATGGTTCCAGATGGAAATGAGAAAAAGATTGATTTAGCTAGCCGGTCAATGCTTGCAGCTGTAATTGCAGCAACAGATAAATTTGATTGCCTTAGTCGGTTTGTGCAACTAAAGGGTTTGCCTATATTTGATGAATGGCTCCAAGAGGCTCATAAAGGGAAGATTGGTGATGGTCTTGGGTCTAGAGATGGTGATAAATCTGTTGATGACTTTCTTTTTGTATTACTCCGAGCGCTAGATAAGCTTCCAGTAAACCTTCAGGCTCTACAAGCTTGTAACATTGGTAAATCTGTGAATCATTTGCGAACTCATAAAAACTTGGAAATTCAGAAGAAAGCAAGGGGCTTAGTTGACACATGGAAAAAACGTGTTGAAGCTGAAATGATTATAAATGATGCTAGGTCTGGTTCAGTTCAGACTGTCCCCTGGCCAGCCAGACAACGGCTTTCTGAAGTTGCTCAAGGTGGGAATAAACATTCGAGTGGGTCAGCTGATGTTGCCATGAAGAGCTCAGTTACACAGCTTTCTGCATCCAAAACTGCCTCTGCAAAGATTGTCCCAGGAGAGAATACAAGATCTACATCTGCATCTCCAGGGTCTACGAAATCAGTGCCTTCACCTGCACCCGCAACTGCAAACTTGAAAGATGGACAGCCCTGTGTTGCCACTGCTAGTGGTTCCTTTGATCTTCCTGTGGCAAATGCAAGGGATGAGAAAAGTAGCAGTTCTAGTCCATCTCACAACAGTCAATCTTATTCCAGTGATCATGTGAAAGCTGGGGGTCTCTCAGGAAAGGAGGATGCCAGGAGCTCTACTGCAATGAGTGTGAATAAGGTATCGGGAGGCTCTTCACGGCACCGAAAATCTATGAAGGGATTTCCGGGTTCAACTCCATCTAGAAGGCAAAGGGAAACTGGGTCGAGGCAGAATTCCTCACACAAAAATTTAATTTCTGAGAAAATATCTCAATCTGGATTAAGGGAAAAAGCAAATGATGGAACTACTCTTGAGGGGCATACTCCGAAGCTGATTGTTAAGATCCAAAACCGAAGTCGAAGTCCTGCACAAAGTGCCACTGCAGGTTCTTCTGATGATCCTGCAATCATGAACAGTCGAGCTTCATCTCCTGTTCTTTCAGAGAAGCACGATCAGTTTGACCGCTGCTCAAAGGAAAAGAGTGATTTTTATCGAGCTAATATTGGTGCAGACATTTATACAGAATCGTGGCAGAGTAACGATTTCAAAGATGTATTGACTGGTTCTGATGAGGGTGATGGATCACCAGAAGCCATTACTGATGAACAGTGTAGGACTGGTGAGGATTGTAAGAAAGTATTAGATGTATCAAAGGCAGCTTCATCATCATCTGGGAATGAAAGTAGAGCCAGGAATTTGCAGGATGCTTCTTACAGCTCCATCAATGCTCTTATTGAAGGTGTTAAGTACACTGAAGCTGATGATGTTGGAATGAATCTTCTTGCTAATGTGGCTGCTGGAGAGATCTCAAAATCTGAATTGGGAATGCCAGTTGGATCCCCTGAAAAAGACACCACTACTATTGAACAGTCATATGCAGGTGATGCTGCAGTAGTCAAGTCCTCTGAAGAGTATCTTGTTCAGGATAAGTGCTACACTAATGTTGAACATTCGAAGCAGGATTCTAGACCTGGTGATTTAGGGGCAGATGATGATATTCTTGCATCTGAAGGGAAAGCTACAGGAGAACACAATACATCTAGTATGGATTTATGGGTTACTGAAACTAGTTTAGAAAGCAAAGGAAAATTAATTGAAAAATCATCTGGTACATCATCTGCTGGCATTCCTGAAAGCACCATTCAAGAAGTCCGAGATAGTGACTCTAGCAAACTGGTAAAGGAAAAGAAGGTTGTTGTGAGAGTGGATGCAGTTGGTAATGTTGATGTTAAGGTCAATGTTGTTGCAAGCGAAAGTGAAACAGAGGCAATTGAAAATTTTTCGTGCACCTGTGAAGTAGTTGATGTCAAGTGTGATAACCGTGCTTCTGAAGGACTAAGCGGTGACAAAGAGACAGCTGGCAAGTCTCCTGCCATTCGCATGTCGTCTGACTATGTAATAGCAACAGATGAGAATGCACCCCAATCATCTGGTGACATTGTTGATAAGGTTCTTGAACACGTAAATGAAAGGGAATCTGAAAAAAATGATGATATGGTTGCTCAGGATCATGCTAAGGAGTCCATAAAGCAAAAAAATGAGTCTGAAAATGATGCTATTATGGTGCCCAAGAACAGAGGTTTATGTTCAGGTGCGACTGGTCTTGATGCTGAATACGTGGAAGAGAATTCAGGTACAAAAGAGGTTTGTGACCAAGTTGCAGGAGCAGGACAGATAGTGCACACAGATTTACCTAGCTTTCCTTCACGAGAAATGGATCAGTGTTCAGGTCATAAGGATTCAAAATTGACTGCCATGGAATCAGAGGAAGCAGAGGAATGCACCTCTACCACTGGAGATACCTCTTCTGCGTCTGTTGCTGGTGTCTCAGAAGTGGACACAAAAGTTGAATTTGATTTAAATGAAGGGTTCAATGCAGATGATGGGAAATGTAGTGAGATGCCTGGGTCTACACCTGCTGCAAGATTGGTCAGTCCTGTTCCATTTTCTGCTTCATCCATGTCTTTTGGTATTCTCTCGATCACAGTAGCTGCTGCTGCAAAGAGCCCCTTTGTGGCACCTGAAGATTTATTGAAAAGTAAAAAGGAGCTTGGTTGGAAGGGATCTGCTGCTACTAGTGCATTTCGGCCAGCTGAGCCCAGGAAAGTTATGGAAATTCCTCTTGATATGTCAACTACCCCTATTCCTAATGATGAAGCTAGAAAGCAGAGCCGGGCACCATTGGATTTTGACTTGAATGTTTCTGATGAAGTAATACTTGATGATGTTTCTTCCCAAAATTGTGCTCGTCAGACTGATTGTGGAACTCATTCAGACAATGGGCATGATCCAAATAAATCAATGGCCTCACATGTTAGTTGTTCTGGAGGTTTAGGTCTTGACTTGAACTTAGTGGATGGAGCTTCTGATGTGGGTAACTGCACCTTAAGTAGTAGTCATAAAATGGATGTACCACTTATGCAGGTGAAATCAGCAGCCAGTGGTCCTCCAAATGGAGAGATGAGTTTCCGCAGGGATTTCGATCTGAATGATGGACCTGTAGTTGATGAAGTCACCTCTGAACCTTTGATGTCCACACAACCCGCTAGGAATAGTGTACCATCTCAACCACCCATTTCTGGACTTAGGATGAGTAATGCAGAAGTAGGCAACTTCTCTTCATGGTTTCCTTCCACTGCGAACACCTATTCAGCGGTAACAATATCTTCAATTATGTCTGATAGAGGTGATAGGTCCTTTTCAATTGTTGCCCCTAATGGGCCACAAAGGATGTTGGGTCCTGCAACTGGTAGCAATCCATTTGGACCTGATATTTATAAGGGGGCAGTTTTGTCTTCTTCTCCTGCAGTGCCATATCAATCTGCACCATTTCAGTATCCTGTCTTCCCTTTCAATTCCAGCTTTCCTCTTCCATCAGCATCATTTTCTGGTGGATCAACTCCTTATGTAGATACAACTTCAGGAGGTAGGCTTTGCTTCCCTGCAGTAAATTCACAACTTATAGGTTCTGTTGGTAATGTTTCAGTCCATTACCCCAGGCCTTACGTTGTTAGTCTCCCAGATGGTAGCAATAGTAGCAGTGCTGAGAACTGTAGGAGAAGGACAAGGCAGGGTTTAGATCTTAATGCTGGACCTGGTTCAAACTTAGAGGGGAGAGATGATAGCTCACCTCTTGTACCACGGCAACTTTCTGTTGCTAGTTCGCAGGCCCAACTTGAAGAGCAAGCACGGATCTTTCACTTAAGCAGTGATGTTCTTAAAAGGAAGGAACCTGATGGGGGATGGGATGGCTACAAGCAAACATCATGGCAGTACCATAATTTGTAA
>Glyma17g09990.1 sequence type=predicted peptide gene model=Glyma17g09990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQPGGRSPKPVSSPTSTSQLKSGSDSVQNSVSSFSSHVKGRKRERVDKGQESVKRDRSTKIDDGDSGHFKQDSILKTEIAKVTEKGGLIDTEGVEKLVQLMVPDGNEKKIDLASRSMLAAVIAATDKFDCLSRFVQLKGLPIFDEWLQEAHKGKIGDGLGSRDGDKSVDDFLFVLLRALDKLPVNLQALQACNIGKSVNHLRTHKNLEIQKKARGLVDTWKKRVEAEMIINDARSGSVQTVPWPARQRLSEVAQGGNKHSSGSADVAMKSSVTQLSASKTASAKIVPGENTRSTSASPGSTKSVPSPAPATANLKDGQPCVATASGSFDLPVANARDEKSSSSSPSHNSQSYSSDHVKAGGLSGKEDARSSTAMSVNKVSGGSSRHRKSMKGFPGSTPSRRQRETGSRQNSSHKNLISEKISQSGLREKANDGTTLEGHTPKLIVKIQNRSRSPAQSATAGSSDDPAIMNSRASSPVLSEKHDQFDRCSKEKSDFYRANIGADIYTESWQSNDFKDVLTGSDEGDGSPEAITDEQCRTGEDCKKVLDVSKAASSSSGNESRARNLQDASYSSINALIEGVKYTEADDVGMNLLANVAAGEISKSELGMPVGSPEKDTTTIEQSYAGDAAVVKSSEEYLVQDKCYTNVEHSKQDSRPGDLGADDDILASEGKATGEHNTSSMDLWVTETSLESKGKLIEKSSGTSSAGIPESTIQEVRDSDSSKLVKEKKVVVRVDAVGNVDVKVNVVASESETEAIENFSCTCEVVDVKCDNRASEGLSGDKETAGKSPAIRMSSDYVIATDENAPQSSGDIVDKVLEHVNERESEKNDDMVAQDHAKESIKQKNESENDAIMVPKNRGLCSGATGLDAEYVEENSGTKEVCDQVAGAGQIVHTDLPSFPSREMDQCSGHKDSKLTAMESEEAEECTSTTGDTSSASVAGVSEVDTKVEFDLNEGFNADDGKCSEMPGSTPAARLVSPVPFSASSMSFGILSITVAAAAKSPFVAPEDLLKSKKELGWKGSAATSAFRPAEPRKVMEIPLDMSTTPIPNDEARKQSRAPLDFDLNVSDEVILDDVSSQNCARQTDCGTHSDNGHDPNKSMASHVSCSGGLGLDLNLVDGASDVGNCTLSSSHKMDVPLMQVKSAASGPPNGEMSFRRDFDLNDGPVVDEVTSEPLMSTQPARNSVPSQPPISGLRMSNAEVGNFSSWFPSTANTYSAVTISSIMSDRGDRSFSIVAPNGPQRMLGPATGSNPFGPDIYKGAVLSSSPAVPYQSAPFQYPVFPFNSSFPLPSASFSGGSTPYVDTTSGGRLCFPAVNSQLIGSVGNVSVHYPRPYVVSLPDGSNSSSAENCRRRTRQGLDLNAGPGSNLEGRDDSSPLVPRQLSVASSQAQLEEQARIFHLSSDVLKRKEPDGGWDGYKQTSWQYHNL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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