Glyma17g09980 - SoyBase

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Report for Sequence Feature Glyma17g09980

Feature Type:	gene_model
Chromosome:	Gm17
Start:	7434378
stop:	7438323
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g09980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G48040	AT	Annotation by Michelle Graham. TAIR10: RHO-related protein from plants 10 \| chr3:17731561-17733241 FORWARD LENGTH=208	SoyBase	E_val: 2.00E-123	ISS
GO:0007015	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament organization	SoyBase	N/A	ISS
GO:0007264	GO-bp	Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009740	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009788	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG0393	KOG	Ras-related small GTPase, Rho type	JGI		ISS
PTHR24072	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24072:SF295	Panther		JGI		ISS
PF00071	PFAM	Ras family	JGI		ISS
UniRef100_B2MVQ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ROP small G protein n=1 Tax=Medicago truncatula RepID=B2MVQ1_MEDTR	SoyBase	E_val: 6.00E-132	ISS
UniRef100_I1MTJ8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTJ8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g09980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g09980

Paralog	Evidence	Comments
Glyma05g01920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g09980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g092100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g09980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g09980

Limit To All Plant Sequences

>Glyma17g09980.2   sequence type=transcript   gene model=Glyma17g09980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAGGATGAAAAAAGTTGTTTCAGAAAAGAAAGGGACAGCAAGAGAATGAGTGAGAATCATGTGAAGTGCCGCCGCGTACACACACATACACATTCACTCTCTCTCTCTCTTAACTTGTCTGTTAAATTCAACAAAAACACACCCTTTGTGAGAACTTGTTGTTGTTGTTGTTGTTCAATGGCTGCAACAGCTTCAAGGTTCATCAAGTGTGTGACAGTCGGGGATGGAGCTGTAGGCAAAACTTGCATGCTCATTTGCTATACAAGCAACAAATTCCCCACGGACTATATTCCAACGGTGTTTGATAATTTCAGTGCAAATGTGGTTGTTGAAAACACAACTGTCAATTTAGGCCTCTGGGACACTGCTGGGCAAGAGGATTACAACAGGCTGAGGCCATTGAGCTACAGGGGGGCAGATGTCTTTGTCTTGGCTTTCTCTTTAGTTAGCCATGCAAGCTACGAAAATGTGTTGAAGAAGTGGGTTCCTGAACTGCAGCATTTTGCTCCTGGTGTCCCAGTGGTGCTAGTTGGCACCAAATTGGATCTTCGAGAAGACAAGCACTATTTGGCTGATCATCCTGGTCTGGCGCCTGTGACTTCTGAGCAAGGTGAGGAATTGCGTAAACTGGTCGGAGCTACGTATTATATAGAGTGCAGCTCAAAGACTCAGCAGAATGTGAAGTCAGTTTTTGATGCTGCTATCAAGGTGGTCATCGAGCCTCCACAAAAACATGAGAAGAAGAAAAAACCACGTCGAGGGTGTCTACTAAATGTCATCTGTGGAAGGAATATAGTTCGTTTCAAATGAAACATTTCATCCAAAGGCTTTTCTTGGGAGGGAAAAGCACTGTCATCATCATTCTGTAAAAAAATTTAAATTGGCTTTTTTAATTTGCTGATAGGGTTATGTTTTGAGGAAATACTAAGTTTTTTTTCGGTGCAAATTTTTTGTAAGGAAAGCACAGTCAAAGCCAATTAATTATTCATGCCAAGCTATTATTTTGCTTCGGTTGATATCATCAACTAGATAATGTAATCAGTACAAAATTTCACATTTGTGTGTTACATTCACATATATGGTTAAAAAATTGTTTTTTGATAGAGC

Coding sequences of Glyma17g09980

Limit To All Plant Sequences

>Glyma17g09980.1   sequence type=CDS   gene model=Glyma17g09980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGAGAATCATGTGAAGTGCCGCCGCGTACACACACATACACATTCACTCTCTCTCTCTCTTAACTTGTCTGTTAAATTCAACAAAAACACACCCTTTGTGAGAACTTGTTGTTGTTGTTGTTGTTCAATGGCTGCAACAGCTTCAAGGTTCATCAAGTGTGTGACAGTCGGGGATGGAGCTGTAGGCAAAACTTGCATGCTCATTTGCTATACAAGCAACAAATTCCCCACGGACTATATTCCAACGGTGTTTGATAATTTCAGTGCAAATGTGGTTGTTGAAAACACAACTGTCAATTTAGGCCTCTGGGACACTGCTGGGCAAGAGGATTACAACAGGCTGAGGCCATTGAGCTACAGGGGGGCAGATGTCTTTGTCTTGGCTTTCTCTTTAGTTAGCCATGCAAGCTACGAAAATGTGTTGAAGAAGTGGGTTCCTGAACTGCAGCATTTTGCTCCTGGTGTCCCAGTGGTGCTAGTTGGCACCAAATTGGATCTTCGAGAAGACAAGCACTATTTGGCTGATCATCCTGGTCTGGCGCCTGTGACTTCTGAGCAAGGTGAGGAATTGCGTAAACTGGTCGGAGCTACGTATTATATAGAGTGCAGCTCAAAGACTCAGCAGAATGTGAAGTCAGTTTTTGATGCTGCTATCAAGGTGGTCATCGAGCCTCCACAAAAACATGAGAAGAAGAAAAAACCACGTCGAGGGTGTCTACTGTCAGTACACTTTTTTCATATCATAACAACTCCTGCACGTGAAACTTTCTTACTTGTGAAAAGGGATAGATCATTAAGTGTTCATTGA

>Glyma17g09980.2   sequence type=CDS   gene model=Glyma17g09980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGAGAATCATGTGAAGTGCCGCCGCGTACACACACATACACATTCACTCTCTCTCTCTCTTAACTTGTCTGTTAAATTCAACAAAAACACACCCTTTGTGAGAACTTGTTGTTGTTGTTGTTGTTCAATGGCTGCAACAGCTTCAAGGTTCATCAAGTGTGTGACAGTCGGGGATGGAGCTGTAGGCAAAACTTGCATGCTCATTTGCTATACAAGCAACAAATTCCCCACGGACTATATTCCAACGGTGTTTGATAATTTCAGTGCAAATGTGGTTGTTGAAAACACAACTGTCAATTTAGGCCTCTGGGACACTGCTGGGCAAGAGGATTACAACAGGCTGAGGCCATTGAGCTACAGGGGGGCAGATGTCTTTGTCTTGGCTTTCTCTTTAGTTAGCCATGCAAGCTACGAAAATGTGTTGAAGAAGTGGGTTCCTGAACTGCAGCATTTTGCTCCTGGTGTCCCAGTGGTGCTAGTTGGCACCAAATTGGATCTTCGAGAAGACAAGCACTATTTGGCTGATCATCCTGGTCTGGCGCCTGTGACTTCTGAGCAAGGTGAGGAATTGCGTAAACTGGTCGGAGCTACGTATTATATAGAGTGCAGCTCAAAGACTCAGCAGAATGTGAAGTCAGTTTTTGATGCTGCTATCAAGGTGGTCATCGAGCCTCCACAAAAACATGAGAAGAAGAAAAAACCACGTCGAGGGTGTCTACTAAATGTCATCTGTGGAAGGAATATAGTTCGTTTCAAATGA

Predicted protein sequences of Glyma17g09980

Limit To All Plant Sequences

>Glyma17g09980.1   sequence type=predicted peptide   gene model=Glyma17g09980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSENHVKCRRVHTHTHSLSLSLNLSVKFNKNTPFVRTCCCCCCSMAATASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVENTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSHASYENVLKKWVPELQHFAPGVPVVLVGTKLDLREDKHYLADHPGLAPVTSEQGEELRKLVGATYYIECSSKTQQNVKSVFDAAIKVVIEPPQKHEKKKKPRRGCLLSVHFFHIITTPARETFLLVKRDRSLSVH*

>Glyma17g09980.2   sequence type=predicted peptide   gene model=Glyma17g09980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSENHVKCRRVHTHTHSLSLSLNLSVKFNKNTPFVRTCCCCCCSMAATASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVENTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSHASYENVLKKWVPELQHFAPGVPVVLVGTKLDLREDKHYLADHPGLAPVTSEQGEELRKLVGATYYIECSSKTQQNVKSVFDAAIKVVIEPPQKHEKKKKPRRGCLLNVICGRNIVRFK*

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