Glyma17g09961 - SoyBase

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Report for Sequence Feature Glyma17g09961

Feature Type:	gene_model
Chromosome:	Gm17
Start:	7422849
stop:	7425547
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g09961

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G40240	AT	Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein \| chr5:16082325-16084466 REVERSE LENGTH=368	SoyBase	E_val: 3.00E-70	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4510	KOG	Permease of the drug/metabolite transporter (DMT) superfamily	JGI		ISS
PF00892	PFAM	EamA-like transporter family	JGI		ISS
UniRef100_G7JNU3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4 n=1 Tax=Medicago truncatula RepID=G7JNU3_MEDTR	SoyBase	E_val: 4.00E-158	ISS
UniRef100_UPI000233E815	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E815 related cluster n=1 Tax=unknown RepID=UPI000233E815	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g09961

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g09961 not represented in the dataset	Glyma17g09961 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g09961

Paralog	Evidence	Comments
Glyma05g01956	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g09961 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g091900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g09961

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g09961

Limit To All Plant Sequences

>Glyma17g09961.1   sequence type=CDS   gene model=Glyma17g09961   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTGAGAAGCAATTTGGTGGAATGGAGTCCATTCATAGCAATGGTGACTGTGGAGTGCCTTAACGTGGGGCTGTCCACGTTGAGTAAAGCAGCCATGTCAAGAGGAGTGAACCACTTCGTCCTTGTTGTCTACTCCAATCCCACCCTGGAAAAAGAAAACAAAATGGAAACACAGAAAATTATTAGTTCTTATTTGGTTACCTGTAAGGTCACTAAGGTGGAATCACAAGTTAATTTTATAAGAACAAGGCCATCCCTTTCTTTCTCGCTTCTCTGCAAGTTCTTCCTCCTCGGCATTCTAGGCATAACTGTCATGCAGAATTGTGTTTTCATCGGCATTAACTACAGCTCTCCCACTCTTGGATCCACTATGAGCAATTTGTCTCCAGCAATCACTTTTGTGCTAGCGGTTACCCTCAGGATGGAGAAGTTGAATATTAGAAGCTCAATAAGCCAGATCAAGGTCATGGGCGCAGTGCTGTCCATATCTGGAGCATTAGTTGTTACCTTTTACAAGGGCAGTTCCATCAGCACCTTTAGAATTCAACCATCTTTGTTGGCTGAAACCAATAACTGGGTCATTGGGGGTCTCGTCTTTGCCATGGCCTCTGTTTCTTTTGCAGCCTGGAATATTACTCAGGCAGTAATTATGAAAGAATATTCATATCAATCAACCATAATAGCCTACTATTGCCTGTTTGGAACTATCCATAGTACAATACTTTCTCTAATTGTAGTCAGAGATTCAAATGCATGGAAAATAAGCCTCGACGTTGACCTCATCTGTATATTCTATTCAGCTATTGCGGGAAGTGTTGTGACATTTTCTGTAACGGCATGGTGCATAAAAAGGAAAGGACCTGTATTTGTTAGCATGTTCAAGCCTGCGGGGATTGCCATTGCTGCCTTTTCCAGTGTTGCCTTCCTTGGTGAAACACTCCATGTTGGCAGTATCATTGGCGCAGTTATAATCGCCATCGGACTTTACACAGTATTGTGGGCACAATCAAAAGAGGAAAACTTGAAAGGTCTCGAAGTTGATAGAAAACCATCCCCATCTACCCAAACAAGTCCTCTACTAGAGTCCCACCAAAGAAACATTTTAGCATAA

Predicted protein sequences of Glyma17g09961

Limit To All Plant Sequences

>Glyma17g09961.1   sequence type=predicted peptide   gene model=Glyma17g09961   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVRSNLVEWSPFIAMVTVECLNVGLSTLSKAAMSRGVNHFVLVVYSNPTLEKENKMETQKIISSYLVTCKVTKVESQVNFIRTRPSLSFSLLCKFFLLGILGITVMQNCVFIGINYSSPTLGSTMSNLSPAITFVLAVTLRMEKLNIRSSISQIKVMGAVLSISGALVVTFYKGSSISTFRIQPSLLAETNNWVIGGLVFAMASVSFAAWNITQAVIMKEYSYQSTIIAYYCLFGTIHSTILSLIVVRDSNAWKISLDVDLICIFYSAIAGSVVTFSVTAWCIKRKGPVFVSMFKPAGIAIAAFSSVAFLGETLHVGSIIGAVIIAIGLYTVLWAQSKEENLKGLEVDRKPSPSTQTSPLLESHQRNILA*

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