Report for Sequence Feature Glyma17g09930
Feature Type: gene_model
Chromosome: Gm17
Start: 7398728
stop: 7400777
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g09930
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G23980 AT
Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr1:8484879-8485988 REVERSE LENGTH=369
SoyBase E_val: 1.00E-84 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
PTHR14155 Panther
RING FINGER PROTEIN 6/12/38
JGI ISS
PTHR14155:SF26 Panther
OS08G0445000 PROTEIN
JGI ISS
PF00097 PFAM
Zinc finger, C3HC4 type (RING finger)
JGI ISS
UniRef100_G7JNT9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7JNT9_MEDTR
SoyBase E_val: 8.00E-122 ISS
UniRef100_I1MTJ3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MTJ3_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g09930
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma17g09930
Paralog Evidence Comments
Glyma05g01990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g09930 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g091600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g09930
Coding sequences of Glyma17g09930
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g09930.1 sequence type=CDS gene model=Glyma17g09930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCGCAGCATTAATGGAAACTTGAAGTACTCATCATATTATCCTCAATCTCCCAACGACGTTAACATGAGCAGCAGCAACAATAAAGAAGCAACAACGGCATCATCTCTCAGCAGAATCAGTCCACTCATTCTACTAGTCATAATAGTTCTAGCAGTTATCTTCTTCGTCTACGGGCTCGTCCATTTGATTCTATGGTTTTTCATGAAAAGACCATTATCACCTTCATCTCTCTACAACTCCAACAGGTTCCACGAATACTCCACGCGCTCCCGTGTTCTTCTCCAAAGGCAGCTTCAGCAACTCTTCCGCTTGCACGATTCGGGTCTCGACCAAGCCGTCATAGACGCTTTACCCGTTTTCTGTTACCAGGACTTGTTGGGGTCGAAGGAACCGTTCGATTGTGCCGTGTGTTTGTGCGAGTTCTCCGAGGACGACAAGCTGAGGTTGCTTCCTATGTGCACGCACGCCTTCCACATGAACTGTCTTGACACGTGGCTTCTCTCCAATTCCACGTGTCCTCTTTGCAGGGCGTCTCTTTCCGAGTACATGGAGAATCAGAATCCAATGTTTAATGTTGGCAATTCCAGTTCTTTGGTTTTGCCAAATAGATTCAGGGTTGAAGAAGAGAATAATGGGTGTTCAGATAGTCAAAGGGTGTTTTCTGTGAGGCTTGGAAAATTCAGAAATGGAGAGGTGGGAGGGGACGGTGGTTGTAGTTTGAGTGAGAGGAGATGCTACTCTATGGGTTCGTATCGGTATGTGGTTCGTGATTTGAATTTGCAAGTCGTGTTATCTCATTCTCAATCTCAAGATGATGATGATGATGTTTTGGAAAATGGGAATGTGGAGGGGAAGAGGATAGGGGACTCAACCAAAGGTGAGAGCTTCTCTGTTTCCAAGATATGGCTTTGGTCCAAGAAGACCAGATTTCATGGTTCTAATGCACCTTTCCCTTGA
Predicted protein sequences of Glyma17g09930
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g09930.1 sequence type=predicted peptide gene model=Glyma17g09930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRSINGNLKYSSYYPQSPNDVNMSSSNNKEATTASSLSRISPLILLVIIVLAVIFFVYGLVHLILWFFMKRPLSPSSLYNSNRFHEYSTRSRVLLQRQLQQLFRLHDSGLDQAVIDALPVFCYQDLLGSKEPFDCAVCLCEFSEDDKLRLLPMCTHAFHMNCLDTWLLSNSTCPLCRASLSEYMENQNPMFNVGNSSSLVLPNRFRVEEENNGCSDSQRVFSVRLGKFRNGEVGGDGGCSLSERRCYSMGSYRYVVRDLNLQVVLSHSQSQDDDDDVLENGNVEGKRIGDSTKGESFSVSKIWLWSKKTRFHGSNAPFP*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
