SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G11130 | AT | Annotation by Michelle Graham. TAIR10: RNA-dependent RNA polymerase 2 | chr4:6780522-6784390 FORWARD LENGTH=1133 | SoyBase | E_val: 0 | ISS |
| GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0007267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell-cell signaling | SoyBase | N/A | ISS |
| GO:0009616 | GO-bp | Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing | SoyBase | N/A | ISS |
| GO:0009855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem maintenance | SoyBase | N/A | ISS |
| GO:0010267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference | SoyBase | N/A | ISS |
| GO:0010495 | GO-bp | Annotation by Michelle Graham. GO Biological Process: long-distance posttranscriptional gene silencing | SoyBase | N/A | ISS |
| GO:0016246 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA interference | SoyBase | N/A | ISS |
| GO:0016441 | GO-bp | Annotation by Michelle Graham. GO Biological Process: posttranscriptional gene silencing | SoyBase | N/A | ISS |
| GO:0016458 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing | SoyBase | N/A | ISS |
| GO:0016569 | GO-bp | Annotation by Michelle Graham. GO Biological Process: covalent chromatin modification | SoyBase | N/A | ISS |
| GO:0030422 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference | SoyBase | N/A | ISS |
| GO:0031047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0003968 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA-directed RNA polymerase activity | SoyBase | N/A | ISS |
| KOG0988 | KOG | RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference | JGI | ISS | |
| PTHR23079 | Panther | RNA-DEPENDENT RNA POLYMERASE | JGI | ISS | |
| PF05183 | PFAM | RNA dependent RNA polymerase | JGI | ISS | |
| UniRef100_G7JNT8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Rna-dependent RNA polymerase n=1 Tax=Medicago truncatula RepID=G7JNT8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MTJ2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTJ2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g09920 not represented in the dataset |
Glyma17g09920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g02000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g091500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g09920.1 sequence type=CDS gene model=Glyma17g09920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGACGACAACGACACCCCTTTCCCACACGGTTCGCGTGTCCAACATCCCCCAATCCGCGACCGCGAAGGACCTCCTCGACTTCCTCGAATCGACGTTGGGTTCCTCCACGGTGTTCGCCCTCGAAATCTTCTCCGACAACCCCAACTGGAAGTCCCGCGGCTTCGGGCGCGTCCAGTTCGAGACCCTCGACGCCAGGTCCCGCGCCCTCTCGCTCTCCCAACTCAACCAGCTCCTCTTCAACCGCCACTTCCTCCGCCTCTCCGAAACCGACTCCGACATCATCTTCCGCCCCCAACACCGCCTCCAAAACGGCGTCCTCTACGCCGGCTTCATGCTATCCGACCACCGCATGAGCGTCCTCGAATCGTGGGAGGGCATTGCGGGGTGGGTCCTGCCCCAAAGGAAGAGACTTGACTTCTGGGTGTGGCATAATGGTGACTGTTACAGACTCGAGTTTTTGTTTGAGGATATTTTGGAGTCTCATGGCTATTGTTTGGGAGAAGATGCCAGACTCAATGCCCTTCTCTTGAAGATGAAATTTGGGCCAAGGATTTATAAGAAAAAGACAGGGACAGATGTGGCAGCCAATTTTAGGGGTGATAGATACCGTTTTCTGAAGGAGGATTTTGAATTTCTTTGGGTGCGGACTACTGACTTCTCGCCTCTCAAGTCAATTGGGCACTCTACTTCGTTTTGTTGGGAAATTGTGGAGGAACATTTAGCTTCGGATGTTTTTACAAGTTTCCCACTCTACAAGGAAAATTTGAGAGATCTGGCTCTGGAAGACAGAGAAGAACTCTGTTCTTTGACAGAAGCAGTTCCGCTTGTAAAACATGCTACGCAATCCAAGTTACCTTATGAGGCTGTTTTCCAGCTGAATTCTCTTGTTCATACCCAGAAAATAAGTCTTGCTTCGGTGGATGATGAATTGATTGACTTGTTAGCAGACTTAGATGAAGAAACTAGAGCTGTGGTTTTTCAGAAATTGCACAAGATGAGCTTCACTTGTTATGAGCCTCTCAAATTTGTCAAGACTCAATTGCATGTGCTGAGTAACAAGAAAAAAGGTCTGCTGCAATCGCCGCAGAATAGGCTGACAGATAGTAATATTATGAGCTGTCATAGAGCCTTGATTACCCCGACAAAGATTTATTGCCTTGGTCCCGAGCTTGAAACCTCAAATCATGTGGTAAAGCACTTTGCTTCACTTGCATCAGACTTCATGAGGATTACCTTTGTTGAAGAGAATTGGAATAAGCTTCCAACTAATGCAGTATCAACTGGTGTGCAAAAGGGAATCTTTTCAAAGCCTTTGAAAACTGAAATATATAAGCGGATATTGACTATTCTTCGAGATGGGATCGTAATTGGCTCAAAGAGATTTGAGTTCCTGGCCTTCTCTGCTAGTCAGCTGCGATCAAATTCTGTTTGGTTATTTGCTTCTAATGACAATCTGAAAGCAGCAGATATCAGAGAATGGATGGGATGCTTCAACAATATTCGCAGTGTTTCTAAATGTGCAGCGAGGATGGGTCAGTTGTTCAGTTCTTCCATGCAAACTTTTGAAGTGGCCTCTGAAGATGTGGAGATGATTCCAGATATTGAAGTTACTTCTGATGGTGTAAGCTACTGTTTCTCAGATGGTATTGGAAAAATTTCCCAATGTTTTGCTAGGCAAGTTGCTCAAAAGCTAAACTTGGATCATACTCCATCAGCATTTCAAATTCGGTATGGAGGATTTAAAGGTGTCATTGCCATTGATCGCCATTCCTTTAGGAAGTTATCATTGCGTAGCAGCATGCTTAAGTTTGAATCCAATAATAGGATGCTTTGTGTCACTAAATGGAGTGAGTCAATGCCTTGCTTTCTCAATCGAGAGATTATATCCCTGTTGACTACGTTAGGAGTAAAAGATGAGGTACTTTTGGCAATGCAACAGGACCAATTGGATTTGTTAGGAAGGATGTTGACTGATAGTAAAGCAGCTTTGGATGTTTTGGAAAGTTTAAACGGAGCTGATTCAAAGAGCATTCTAGTGAAGATGTTGCATGAATTTAATGAGCCAAACAGTGAGCCTTACCTATCGATGATGCTTAAGGCTTATTATGCATACCAATTATCTGACTTGAAAAGTAGATGCCGAATATTTGTTCCCAAGGGTCGGGTCTTGGTAGGTTGCTTGGATGAAACTGGTCTTTTGAATTATGGCCAAGTATTTGTCCGCATAACCGTGGCAAAAACTAGGGAAAATTTTGGAGATGAAAACCTAAGGAAAGTGGATGGGGATGATAGCACACGTATAATAGTGGGAAAGGTGGTGGTCACAAAAAATCCTTGTCTTCACCCAGGAGACATCAGAGTCCTTGATGCTATCTACAGTAAAGAATTAGAGGAAAACGGTTTGAGGGATTGCCTTGTATTTCCACAAAAAGGACATAGGCCTCATCCAAATGAATGCTCTGGAGGTGATCTTGATGGAGATTTGTTTTTCTTAAGTTGGGACAAAGATCTAATCCCATGTCAAACTGAGGCTCCAATGGACTATACAGGAAGGAGGCCTCGTATAATGGACCATAAGGTGACCCTAGAGGAAATCCAACAATTCTTTGTTGATTACATGATCAATGATACTTTGGGTGCTATCTCTACTGCACATCTCGTTCATGCTGACCGTGAACAAGATAAGGCCAAGAGTAGAAAATGTCTGGAATTGGCAGAGCTTCATTCCATGGCTGTTGACTTTGCAAAGACTGGAGCACCTGCTGCAATGCCTAGAGTTCTGAAACCAAGAGAGTTTCCAGATTTCATGGAGAGAGTTGACAAGCCTATGTACATCTCCAAGGGGGTACTGGGAAAACTTTATCATGCCATAATTGAGTCACAAATGCAAATAAGATATAGCTTTGTGTGGTCAGAGAAGCATGCTGAAGAAGCATATGATCGTAGCCTTGAAGTGAATGGTTTTGAGGCCTTCCTTGAGACAGCATCAACTCACAAAGAAATGTATGCAGAGAAGATGAGCAGTTTAATGGACTTTTATGGTGCAGAGACCGAGGATGAAATGCTACTTGGTAACGTGCAAAACCGTGCTTCATATTTGCAGCGTGATAACAGGAGATATGGTGATATGAAGGATCGGATTCTGCTCTCAGTGAAGAATCTTCAGCGTGAAGCTAAAGAATGGTTTGAAACTAGTTGCCAACCGCGTGAATATAAGCCTATGGCATCTGCATGGTATCATGTGACCTATCACCGCAGCCATTATTGCCAGGAAAGCCCATGTTTTCTAAGCTTTCCATGGATAGTTGGTGACATTTTGCTGCAAATAAGGTCTGTGAACTCCTTTGTTAACAGATGA
>Glyma17g09920.1 sequence type=predicted peptide gene model=Glyma17g09920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTTTTPLSHTVRVSNIPQSATAKDLLDFLESTLGSSTVFALEIFSDNPNWKSRGFGRVQFETLDARSRALSLSQLNQLLFNRHFLRLSETDSDIIFRPQHRLQNGVLYAGFMLSDHRMSVLESWEGIAGWVLPQRKRLDFWVWHNGDCYRLEFLFEDILESHGYCLGEDARLNALLLKMKFGPRIYKKKTGTDVAANFRGDRYRFLKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIVEEHLASDVFTSFPLYKENLRDLALEDREELCSLTEAVPLVKHATQSKLPYEAVFQLNSLVHTQKISLASVDDELIDLLADLDEETRAVVFQKLHKMSFTCYEPLKFVKTQLHVLSNKKKGLLQSPQNRLTDSNIMSCHRALITPTKIYCLGPELETSNHVVKHFASLASDFMRITFVEENWNKLPTNAVSTGVQKGIFSKPLKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNLKAADIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVASEDVEMIPDIEVTSDGVSYCFSDGIGKISQCFARQVAQKLNLDHTPSAFQIRYGGFKGVIAIDRHSFRKLSLRSSMLKFESNNRMLCVTKWSESMPCFLNREIISLLTTLGVKDEVLLAMQQDQLDLLGRMLTDSKAALDVLESLNGADSKSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRCRIFVPKGRVLVGCLDETGLLNYGQVFVRITVAKTRENFGDENLRKVDGDDSTRIIVGKVVVTKNPCLHPGDIRVLDAIYSKELEENGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFLSWDKDLIPCQTEAPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADREQDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREFPDFMERVDKPMYISKGVLGKLYHAIIESQMQIRYSFVWSEKHAEEAYDRSLEVNGFEAFLETASTHKEMYAEKMSSLMDFYGAETEDEMLLGNVQNRASYLQRDNRRYGDMKDRILLSVKNLQREAKEWFETSCQPREYKPMASAWYHVTYHRSHYCQESPCFLSFPWIVGDILLQIRSVNSFVNR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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