Report for Sequence Feature Glyma17g09910
Feature Type: gene_model
Chromosome: Gm17
Start: 7390509
stop: 7393774
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g09910
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G48020 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62865.1); Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17724593-17725000 FORWARD LEN
SoyBase E_val: 4.00E-23 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR13833 Panther
ZINC FINGER PROTEIN TRANSCRIPTION FACTOR
JGI ISS
PTHR13833:SF16 Panther
NHL REPEAT-CONTAINING PROTEIN
JGI ISS
UniRef100_F4K891 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: NHL domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4K891_ARATH
SoyBase E_val: 2.00E-17 ISS
UniRef100_I1MTJ1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTJ1_SOYBN
SoyBase E_val: 7.00E-112 ISS
Expression Patterns of Glyma17g09910
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma17g09910
Paralog Evidence Comments
Glyma05g02011 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g09910 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g091400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g09910
Coding sequences of Glyma17g09910
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g09910.1 sequence type=CDS gene model=Glyma17g09910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCCATCGAGCTAGATTCTGAATCCATTCCCACACCCACGGCCCAAGCCCAAGACCGATCCAACTCCCGCTGCGCACTGCTATTTTCCTACAGCTGCCTCGGCCCACGGCGTCGTTCCTCATGGTGGGAGCGTGTCCGCTCCCACTCCCACTCCACTCCAGCCTCAACCGGTGACCGGTGGTGGTCGCGTGGGCTCAGGGCGCTGAAGAAGCTTCGCGAGTGGTCGGAGATCGTAGCGGGGCCCAAGTGGAAGACCTTCATCCGTAGGTTCAACCGCAACCGCCCCAACAAACGCATACCCACATACCAGTATGACCCCTTCAGTTACGCCCTCAACTTTGACGAGGGGCCTAATGGGGATTTCAACGACGACGACGATGCAGCGCTTCGTAATTTCTCCACGCGCTACGCTGCCGCGAACAACGTGAAATCGCTTTCCCCCAAGGCACGTGACACCGACGACGCTGTTTTGGTATTGATAAGAAATGAAAACGAGGAGCCTCCCTGCCAAAAGAGTTAG
Predicted protein sequences of Glyma17g09910
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g09910.1 sequence type=predicted peptide gene model=Glyma17g09910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSIELDSESIPTPTAQAQDRSNSRCALLFSYSCLGPRRRSSWWERVRSHSHSTPASTGDRWWSRGLRALKKLREWSEIVAGPKWKTFIRRFNRNRPNKRIPTYQYDPFSYALNFDEGPNGDFNDDDDAALRNFSTRYAAANNVKSLSPKARDTDDAVLVLIRNENEEPPCQKS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
