Glyma17g09850 - SoyBase

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Report for Sequence Feature Glyma17g09850

Feature Type:	gene_model
Chromosome:	Gm17
Start:	7348485
stop:	7350515
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g09850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G60190	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr1:22198403-22200463 FORWARD LENGTH=686	SoyBase	E_val: 6.00E-167	ISS
GO:0010029	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of seed germination	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0000151	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR23315	Panther	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	JGI		ISS
PTHR23315:SF31	Panther	OS06G0102700 PROTEIN	JGI		ISS
PF00514	PFAM	Armadillo/beta-catenin-like repeat	JGI		ISS
PF04564	PFAM	U-box domain	JGI		ISS
UniRef100_G7JPU4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: U-box domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JPU4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MTI6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTI6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g09850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g09850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g090900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g09850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g09850

Limit To All Plant Sequences

>Glyma17g09850.1   sequence type=CDS   gene model=Glyma17g09850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCAAAGGGATCGTCGCACCCTATCATTCCCGGCGGTTCACCCATGCGAAGCCATTTCTCCGCCGACACTTGTCACCTCTCTAATCACTCTCTCCCAATCCATATGCAATTTCCAACCCCAATCATTCCCCACCCAACGAAGGAACGCCAGGGAAACAATACGCCAAATAAGCATTGTCTTAATGTTCCTTCAAGAAATTCGACTAATCCCCAACTCCACTATCCTCTCTTTGGCGGAACTCCACTTCACCTTACAAAAAATCCACTTTTTATTGCAAGATTGCACCCTCCAAGGCTCGCGCCTCCTCCTGCTCGCCAAATCGCAACACGTAGCGTCCCTGTTCCCCGCCCTCCTTCGCTCCGTGGCCACCTCTCTGGACGTCTTGCCTCTTCACCAGCTCCACTTGTGCCCCGAAGTCAGGGAGCTGGCCGACCTTGTTACCAAGCAAGCCAGCAAGGCCAAGTTCCAGCTGGACCCCAGCGACGCACGTGCCACCAAAACCCTCCACACGCTTCTGCGCCAGTTCTCCATGGGCACCGAACCTGACCTCACTTCCATGCAGGGAATCCTCCACTACCTCCAAATTAGAACCTGGACAGATTGCAATACGGAGATTAAATTCTTAGAAGAAGAAATCACCTTAGAGTGCCGCGACCGTGAAGAAAAAGAGGTTCCCTTACTTAGTAGCTTGGTAGGGTTCTTATGTTACTGCAGAGGAGTTATTTTCGAAACTAATCAATCCCAAGGAAGATGCAGCACGGAGATGACATCGTTAAACTTAACCCTGTTGACGTCCGTTAATCCAGATGATTTCCGTTGCCCTATTTCTCTCGAGTTGATGACGGATCCGGTCACTGTGTCAACAGGTCAAACCTACGACCGAGCCTCTATTCAGAAATGGCTCAAAGCCGGGAACACAAAATGTCCCAAAACAGGGGAAAAACTAACAAACACGGACTTAGTTCCCAACACAACGCTCAAGAGACTCATCCAACAGTTCTGCGCCGACAACGGCATTTCCGTCGCTAACTCCTGTAACCGTAAAACCAACACCGTCTCAGCAGGTAGTCCCGCGGCGGCACACGCGATTCAGTTCCTCGCGTGGTTCCTCACGCGCAGGCTAGCATTCGGAACCCAAGACCAGAAGCACAAAGCCGCGCAGGAGATTCGCTTTCTCGCCAGAACCAGCATTTTCAATAGGGCGTGTTTGATTGAAATGGGAACAGTGCCTCCTCTGATTGAACTTTTAGCCTCTGCATCGAACGATAATAAATCCACGCAAGAGACTACAATCTCTGCTCTACTGAAGCTCTCTAAACACCCGAATGGACCCAAAAACATCATCAACAGCGGGGGCCTAACCGTAATTCTCTCGGTGTTAAAAAATGGACTTAGCCTTGAAGCTCGTCAAGTCGCGGCTGCTACAATATTTTATCTTTCTTCGGTGAAAGAATTTCGCAAGTTAATAGGGGAAAACCCTGATGTCATTCCGGCTTTGGTGGAGTTAGTTAAAGAAGGAACAACCTGTGGGAGAAAGAATGCTGTGGTTGCTATTTTCGGATTACTTTTGCTTCCTAGGAATCATCAAAGGGTTATCGCTGCTGGTGCTGTTCCGGCGCTTCTTGACATTATAGCTTCTTCGAATAAGGACGAGCTTGTGACTGAATCTTTGGCGGTTCTTGCCGCGCTGGCGGAGAACGTTGATGGGGCGCGTGAGATACTGCAAGGTTCGGCGTTGCGGTTGATTGTAGGGATGCTGCGATCTGCCACGTCACGCGAGGGGAAAGAGCACTCTGCTTCGATTTTGTTGTCGCTTTGCGTCAATGTTGGAGCGGAGGTTGTGGCGGTTCTCGCTAAGGAGCCTTCGTTGATGCCTTTGCTTTATTCGCTTCTCACGGATGGAACTTGTCATGCTGCAAAGAAAGCGCGGTTTCTCATCAAGGTCATACAGGATTTTCACGAGACTAGAAGTGCTGGACTCAAGGGTTCCTCGCTTCCGCAGGAACGCTCGCTTCACGTTTGGTGA

Predicted protein sequences of Glyma17g09850

Limit To All Plant Sequences

>Glyma17g09850.1   sequence type=predicted peptide   gene model=Glyma17g09850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTQRDRRTLSFPAVHPCEAISPPTLVTSLITLSQSICNFQPQSFPTQRRNARETIRQISIVLMFLQEIRLIPNSTILSLAELHFTLQKIHFLLQDCTLQGSRLLLLAKSQHVASLFPALLRSVATSLDVLPLHQLHLCPEVRELADLVTKQASKAKFQLDPSDARATKTLHTLLRQFSMGTEPDLTSMQGILHYLQIRTWTDCNTEIKFLEEEITLECRDREEKEVPLLSSLVGFLCYCRGVIFETNQSQGRCSTEMTSLNLTLLTSVNPDDFRCPISLELMTDPVTVSTGQTYDRASIQKWLKAGNTKCPKTGEKLTNTDLVPNTTLKRLIQQFCADNGISVANSCNRKTNTVSAGSPAAAHAIQFLAWFLTRRLAFGTQDQKHKAAQEIRFLARTSIFNRACLIEMGTVPPLIELLASASNDNKSTQETTISALLKLSKHPNGPKNIINSGGLTVILSVLKNGLSLEARQVAAATIFYLSSVKEFRKLIGENPDVIPALVELVKEGTTCGRKNAVVAIFGLLLLPRNHQRVIAAGAVPALLDIIASSNKDELVTESLAVLAALAENVDGAREILQGSALRLIVGMLRSATSREGKEHSASILLSLCVNVGAEVVAVLAKEPSLMPLLYSLLTDGTCHAAKKARFLIKVIQDFHETRSAGLKGSSLPQERSLHVW*

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