Glyma17g09750 - SoyBase

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Report for Sequence Feature Glyma17g09750

Feature Type:	gene_model
Chromosome:	Gm17
Start:	7251058
stop:	7257518
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g09750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62810	AT	Annotation by Michelle Graham. TAIR10: peroxin 14 \| chr5:25220323-25223571 FORWARD LENGTH=507	SoyBase	E_val: 7.00E-106	ISS
GO:0006625	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to peroxisome	SoyBase	N/A	ISS
GO:0007031	GO-bp	Annotation by Michelle Graham. GO Biological Process: peroxisome organization	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein transporter activity	SoyBase	N/A	ISS
PTHR23058	Panther	PEROXISOMAL MEMBRANE PROTEIN PEX14	JGI		ISS
PF04695	PFAM	Peroxisomal membrane anchor protein (Pex14p) conserved region	JGI		ISS
UniRef100_G7JNV8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peroxisomal membrane protein PEX14 n=1 Tax=Medicago truncatula RepID=G7JNV8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MTH6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTH6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g09750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g09750

Paralog	Evidence	Comments
Glyma05g02180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g09750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g089700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g09750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g09750

Limit To All Plant Sequences

>Glyma17g09750.2   sequence type=transcript   gene model=Glyma17g09750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTTTGATATTTGATGAACAAATTGAACTCCAGATAAGCCAGAAAAGAAAAAAAAAAAGTCCTTTCCAAAAAGGGGAATGAAATGAAAGATGATTATTATGTTGGTGGTTTTTTATGGGTGAATTGGCGTGTAGCGTAGCTGAAGGTTGGAGAAGCAGAAGAGCGAATAAAAGCCCATTCTCATGAGTCTTTTGGTCCTTTGCAACGCAGCAGTAGAGTAGCCAACATGGCCACCCAATCACCGCCTCCTCCCACTCCCACCGCCACCGACCAAAACCAAGGTTCTGAAGTCGTGCAAGCAACAACTGTAGATCAGCAAAATGCCAGAGAAGAGCCTGCTAAACAGAGTTCAACTACATCAGTCTTTGTGAACTCGCAACTGATGCGAGAAGAACAAATTCAGAATGCTGTGAAATTTCTATCACACCCAAAAGTTATAGGTTCACCTGTCATGTATAGGCGATCATTTCTAGAGAAGAAGGGCCTTACGAAGGAGGAGATTGATGAAGCTTTTCAGCGTGTGCCAGATTCAGCTCCAACAGTGCAGACAGGTGGTGTAAATCAAGATGGCCAATTGAAATCGTCATCAAACATTCAGCAACAAGCCCAACATCAAACTTTGCAGCCGGGTTTACCTGCTTCTACTGGTGTTAATACTTCGCCGGGAACCTTATCACGCTCCAAATTTCACTGGTCTCATACACTTATTGCAGTTGGATTACTGGCTGCTTCAGGTGCTGGAACAGCTATAATAATTAAGAATTCTGTTCTCCCTCGGTTAAAATCTTGGATACGTAAGGTTGTCTTAGACAATGATGATGAACAATTAAAGAAAACTGACAACAAACCGACACTGATGGAAGAAGCTGCGCAAGCTGCAAAATCAGCTGCAGCTGCAGCTGCAGATGTGGCAAAAGCAAGCCAAGAAATGCTGGCTTCAAAAGGTGAAGAGAGGAGATACTTTGTGGAAGTTGTGAGCCTTTTAGATAAACAAGTACAAGAAATGAAGTCAATGACAAATGCCATAAGAAGGTTGGAAGGGCAAGAAGATCTTCAAATCAGTCAAACAAGTTCGAAGCAACTGATTGTGAATGGAAAAGCAGACTACGACTTGCATTCAGTGAGATTTTCATCCCCACCTACATCTGTTGAACCATCAAGTGGTCTTCATCCAAAGGCATATGCGGAGCCTTGGGAGGTTAGTCAGGTGCAAAGCACGTCTACCCAGATGCTTCAGTCTCAAGTAAATGGTGAAGACTTGAATACTAAGGCCCAGGATACCCCTCTAGTAAATGGGGATGACTCATTACCCTGGTGGCAGAGGAAAAATGTCAGAATCAGAGAGATTGATAATGAAAATGAGTCTAATGGAGTACCTTATGCTTCTGCATCCAATCAGCAGCCAGTCCAACGCGTATGGGTTCCTCCTCAACCTCCCCCCATAGCTATGCCGGAGGCTGCAGAAGCAATCAGACGACCAAAACCAGCGGCCCAAAAGGAACAGGTGTCTGATAATCAGTCAGTAGCTCATTCTTTAGACAGCTCTGATGACGTACATATGGCCCCAAAACTATTGGAATCCGAAGGTGCAGTAGAGGGCAGCAGTGTCAGCTCGGTTCCCACCTCTAGTGAGATACAAGAGGAGCATGAAGTCAAATATGATGAGAAATGAAGGTGAATCATGCATGATCTATCATGAAAAAACATGAAGTCGGAAATAACACTTGAAGTAGTCCCATATTTGGAATAAGCTTGTCACACAATCTGTTTCATAATCATATATAGTTGTACTTTTGAACTGGACATCAATACAATATGCAAATGCACGTATCTTTCTATGCAAGAATTTGTTTACTAAAGCAAAAGTTTTAATTACTGAACTTTTACTAAATTTTGTGAAGTGCA

Coding sequences of Glyma17g09750

Limit To All Plant Sequences

>Glyma17g09750.1   sequence type=CDS   gene model=Glyma17g09750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACCCAATCACCGCCTCCTCCCACTCCCACCGCCACCGACCAAAACCAAGGTTCTGAAGTCGTGCAAGCAACAACTGTAGATCAGCAAAATGCCAGAGAAGAGCCTGCTAAACAGAGTTCAACTACATCAGTCTTTGTGAACTCGCAACTGATGCGAGAAGAACAAATTCAGAATGCTGTGAAATTTCTATCACACCCAAAAGTTATAGGTTCACCTGTCATGTATAGGCGATCATTTCTAGAGAAGAAGGGCCTTACGAAGGAGGAGATTGATGAAGCTTTTCAGCGTGTGCCAGATTCAGCTCCAACAGTGCAGACAGGTGGTGTAAATCAAGATGGCCAATTGAAATCGTCATCAAACATTCAGCAACAAGCCCAACATCAAACTTTGCAGCCGGGTTTACCTGCTTCTACTGGTGTTAATACTTCGCCGGGAACCTTATCACGCTCCAAATTTCACTGGTCTCATACACTTATTGCAGTTGGATTACTGGCTGCTTCAGGTGCTGGAACAGCTATAATAATTAAGAATTCTGTTCTCCCTCGGTTAAAATCTTGGATACGTAAGGTTGTCTTAGACAATGATGATGAACAATTAAAGAAAACTGACAACAAACCGACACTGATGGAAGAAGCTGCGCAAGCTGCAAAATCAGCTGCAGCTGCAGCTGCAGATGTGGCAAAAGCAAGCCAAGAAATGCTGGCTTCAAAAGGTGAAGAGAGGAGATACTTTGTGGAAGTTGTGAGCCTTTTAGATAAACAAGTACAAGAAATGAAGTCAATGACAAATGCCATAAGAAGGTTGGAAGGGCAAGAAGATCTTCAAATCAGTCAAACAAGTTCGAAGCAACTGATTGTGAATGGAAAAGCAGACTACGACTTGCATTCAGTGAGATTTTCATCCCCACCTACATCTGTTGAACCATCAAGTGGTCTTCATCCAAAGGCATATGCGGAGATAATGGCCATGGTCCAAAGAGGAGAGAAGTCTTCTAATATTAGGCCTTGGGAGGTTAGTCAGGTGCAAAGCACGTCTACCCAGATGCTTCAGTCTCAAGTAAATGGTGAAGACTTGAATACTAAGGCCCAGGATACCCCTCTAGTAAATGGGGATGACTCATTACCCTGGTGGCAGAGGAAAAATGTCAGAATCAGAGAGATTGATAATGAAAATGAGTCTAATGGAGTACCTTATGCTTCTGCATCCAATCAGCAGCCAGTCCAACGCGTATGGGTTCCTCCTCAACCTCCCCCCATAGCTATGCCGGAGGCTGCAGAAGCAATCAGACGACCAAAACCAGCGGCCCAAAAGGAACAGGTGTCTGATAATCAGTCAGTAGCTCATTCTTTAGACAGCTCTGATGACGTACATATGGCCCCAAAACTATTGGAATCCGAAGGTGCAGTAGAGGGCAGCAGTGTCAGCTCGGTTCCCACCTCTAGTGAGATACAAGAGGAGCATGAAGTCAAATATGATGAGAAATGA

>Glyma17g09750.2   sequence type=CDS   gene model=Glyma17g09750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACCCAATCACCGCCTCCTCCCACTCCCACCGCCACCGACCAAAACCAAGGTTCTGAAGTCGTGCAAGCAACAACTGTAGATCAGCAAAATGCCAGAGAAGAGCCTGCTAAACAGAGTTCAACTACATCAGTCTTTGTGAACTCGCAACTGATGCGAGAAGAACAAATTCAGAATGCTGTGAAATTTCTATCACACCCAAAAGTTATAGGTTCACCTGTCATGTATAGGCGATCATTTCTAGAGAAGAAGGGCCTTACGAAGGAGGAGATTGATGAAGCTTTTCAGCGTGTGCCAGATTCAGCTCCAACAGTGCAGACAGGTGGTGTAAATCAAGATGGCCAATTGAAATCGTCATCAAACATTCAGCAACAAGCCCAACATCAAACTTTGCAGCCGGGTTTACCTGCTTCTACTGGTGTTAATACTTCGCCGGGAACCTTATCACGCTCCAAATTTCACTGGTCTCATACACTTATTGCAGTTGGATTACTGGCTGCTTCAGGTGCTGGAACAGCTATAATAATTAAGAATTCTGTTCTCCCTCGGTTAAAATCTTGGATACGTAAGGTTGTCTTAGACAATGATGATGAACAATTAAAGAAAACTGACAACAAACCGACACTGATGGAAGAAGCTGCGCAAGCTGCAAAATCAGCTGCAGCTGCAGCTGCAGATGTGGCAAAAGCAAGCCAAGAAATGCTGGCTTCAAAAGGTGAAGAGAGGAGATACTTTGTGGAAGTTGTGAGCCTTTTAGATAAACAAGTACAAGAAATGAAGTCAATGACAAATGCCATAAGAAGGTTGGAAGGGCAAGAAGATCTTCAAATCAGTCAAACAAGTTCGAAGCAACTGATTGTGAATGGAAAAGCAGACTACGACTTGCATTCAGTGAGATTTTCATCCCCACCTACATCTGTTGAACCATCAAGTGGTCTTCATCCAAAGGCATATGCGGAGCCTTGGGAGGTTAGTCAGGTGCAAAGCACGTCTACCCAGATGCTTCAGTCTCAAGTAAATGGTGAAGACTTGAATACTAAGGCCCAGGATACCCCTCTAGTAAATGGGGATGACTCATTACCCTGGTGGCAGAGGAAAAATGTCAGAATCAGAGAGATTGATAATGAAAATGAGTCTAATGGAGTACCTTATGCTTCTGCATCCAATCAGCAGCCAGTCCAACGCGTATGGGTTCCTCCTCAACCTCCCCCCATAGCTATGCCGGAGGCTGCAGAAGCAATCAGACGACCAAAACCAGCGGCCCAAAAGGAACAGGTGTCTGATAATCAGTCAGTAGCTCATTCTTTAGACAGCTCTGATGACGTACATATGGCCCCAAAACTATTGGAATCCGAAGGTGCAGTAGAGGGCAGCAGTGTCAGCTCGGTTCCCACCTCTAGTGAGATACAAGAGGAGCATGAAGTCAAATATGATGAGAAATGA

Predicted protein sequences of Glyma17g09750

Limit To All Plant Sequences

>Glyma17g09750.1   sequence type=predicted peptide   gene model=Glyma17g09750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATQSPPPPTPTATDQNQGSEVVQATTVDQQNAREEPAKQSSTTSVFVNSQLMREEQIQNAVKFLSHPKVIGSPVMYRRSFLEKKGLTKEEIDEAFQRVPDSAPTVQTGGVNQDGQLKSSSNIQQQAQHQTLQPGLPASTGVNTSPGTLSRSKFHWSHTLIAVGLLAASGAGTAIIIKNSVLPRLKSWIRKVVLDNDDEQLKKTDNKPTLMEEAAQAAKSAAAAAADVAKASQEMLASKGEERRYFVEVVSLLDKQVQEMKSMTNAIRRLEGQEDLQISQTSSKQLIVNGKADYDLHSVRFSSPPTSVEPSSGLHPKAYAEIMAMVQRGEKSSNIRPWEVSQVQSTSTQMLQSQVNGEDLNTKAQDTPLVNGDDSLPWWQRKNVRIREIDNENESNGVPYASASNQQPVQRVWVPPQPPPIAMPEAAEAIRRPKPAAQKEQVSDNQSVAHSLDSSDDVHMAPKLLESEGAVEGSSVSSVPTSSEIQEEHEVKYDEK*

>Glyma17g09750.2   sequence type=predicted peptide   gene model=Glyma17g09750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATQSPPPPTPTATDQNQGSEVVQATTVDQQNAREEPAKQSSTTSVFVNSQLMREEQIQNAVKFLSHPKVIGSPVMYRRSFLEKKGLTKEEIDEAFQRVPDSAPTVQTGGVNQDGQLKSSSNIQQQAQHQTLQPGLPASTGVNTSPGTLSRSKFHWSHTLIAVGLLAASGAGTAIIIKNSVLPRLKSWIRKVVLDNDDEQLKKTDNKPTLMEEAAQAAKSAAAAAADVAKASQEMLASKGEERRYFVEVVSLLDKQVQEMKSMTNAIRRLEGQEDLQISQTSSKQLIVNGKADYDLHSVRFSSPPTSVEPSSGLHPKAYAEPWEVSQVQSTSTQMLQSQVNGEDLNTKAQDTPLVNGDDSLPWWQRKNVRIREIDNENESNGVPYASASNQQPVQRVWVPPQPPPIAMPEAAEAIRRPKPAAQKEQVSDNQSVAHSLDSSDDVHMAPKLLESEGAVEGSSVSSVPTSSEIQEEHEVKYDEK*

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