Glyma17g09740 - SoyBase

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Report for Sequence Feature Glyma17g09740

Feature Type:	gene_model
Chromosome:	Gm17
Start:	7241079
stop:	7246155
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g09740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62790	AT	Annotation by Michelle Graham. TAIR10: 1-deoxy-D-xylulose 5-phosphate reductoisomerase \| chr5:25214358-25217292 REVERSE LENGTH=477	SoyBase	E_val: 0	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0000096	GO-bp	Annotation by Michelle Graham. GO Biological Process: sulfur amino acid metabolic process	SoyBase	N/A	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0006546	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycine catabolic process	SoyBase	N/A	ISS
GO:0006636	GO-bp	Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0006655	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process	SoyBase	N/A	ISS
GO:0006733	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidoreduction coenzyme metabolic process	SoyBase	N/A	ISS
GO:0006766	GO-bp	Annotation by Michelle Graham. GO Biological Process: vitamin metabolic process	SoyBase	N/A	ISS
GO:0008299	GO-bp	Annotation by Michelle Graham. GO Biological Process: isoprenoid biosynthetic process	SoyBase	N/A	ISS
GO:0008652	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0009072	GO-bp	Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family metabolic process	SoyBase	N/A	ISS
GO:0009106	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipoate metabolic process	SoyBase	N/A	ISS
GO:0009108	GO-bp	Annotation by Michelle Graham. GO Biological Process: coenzyme biosynthetic process	SoyBase	N/A	ISS
GO:0009117	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide metabolic process	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0015994	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll metabolic process	SoyBase	N/A	ISS
GO:0015995	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process	SoyBase	N/A	ISS
GO:0016117	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process	SoyBase	N/A	ISS
GO:0019216	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of lipid metabolic process	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0019748	GO-bp	Annotation by Michelle Graham. GO Biological Process: secondary metabolic process	SoyBase	N/A	ISS
GO:0019760	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate metabolic process	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0031408	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxylipin biosynthetic process	SoyBase	N/A	ISS
GO:0042744	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process	SoyBase	N/A	ISS
GO:0043085	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity	SoyBase	N/A	ISS
GO:0044272	GO-bp	Annotation by Michelle Graham. GO Biological Process: sulfur compound biosynthetic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0030604	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
GO:0070402	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NADPH binding	SoyBase	N/A	ISS
PF02670	PFAM	1-deoxy-D-xylulose 5-phosphate reductoisomerase	JGI		ISS
PF08436	PFAM	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal	JGI		ISS
UniRef100_I1MTH5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTH5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0GYS3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Hevea brasiliensis RepID=Q0GYS3_HEVBR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g09740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g09740

Paralog	Evidence	Comments
Glyma05g02190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g09740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g089600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g09740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g09740

Limit To All Plant Sequences

>Glyma17g09740.1   sequence type=CDS   gene model=Glyma17g09740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGCTCTCAATATCTCTTCTCCTGCTGAAGTCAAGTCCATTTTTTTCGCTGATTACTTCAAGTCTAACTGCATCACTGCAAAGTTCACAGGTGGTTTTGCTTTTAAGAGAAAAGAGCGTGGAGCTGCATCTGGAGGGCGAGTTTGTTGCTCAGTGCTGGCACCACCACCACCGGCCTGGCCGGGACGAGCGGTTCCAGAGCAAGGCAGCAAGACTTGGGATGGACCAAAACCCATTTCAATTGTTGGGTGTACTGGTTCAATTGGAACTCAGACACTAGATATTGTGGCAGAGAATCCAGATAAGTTTAAAGTTGTGGCACTTGCAGCTGGTTCAAATGTTACTCTTCTTGCAGACCAGGTAAAAAGATTTAAGCCTCAACTTGTTGCTGTTAGAAATGAGTCCCTAATTGCTGAACTTAAAGAGGCCTTGCATGACGTTGAAGAAAAACCTGAGATCATCCCTGGAGAGCAGGGAATCATTGAGGTTGCTCGTCACCCAGATGCAGTCAGTGTAGTCACAGGAATAGTAGGCTGTGCAGGACTGAAGCCAACAGTTGCTGCGATAGAAGCAGGGAAATACATAGCTTTAGCCAACAAAGAGACATTGATTGCTGGAGGTCCTTTTGTTCTTCCTCTTGCTCAGAAGCATAATGTAAAAATACTTCCAGCTGATTCAGAACATTCTGCCATCTTTCAGTGTATCCAGGGGTTGCCAGAGGGTGCACTTAGGAGAGTTATTTTAACTGCATCTGGAGGTGCTTTCAGGGATTGGCCAGTTGATAAACTGAAAGATGTTAAAGTTGCTGATGCATTAAAACATCCTAACTGGAATATGGGGAAAAAGATAACTGTGGACTCTGCTACCCTTTTTAATAAGGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCTGACTATGATCATATTGAGATTGTCATTCATCCACAATCAATCATACATTCAATGATTGAAACACAGGATTCATCTGTTCTTGCACAGTTGGGGTGGCCTGATATGCGTTTGCCAATCCTCTATACATTATCATGGCCTGACAGGATTTATTGTTCTGAAGACACTTGGCCCTGCCTTGATCTTTGCAAGATTGGTTCACTTACATTTAAAACTCCAGATAATGTAAAGTATCCATCCATGAATCTTGCCTATGCTGCTGGCCGTGCTGGAGGCACAATGACAGGAGTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAGATGTTTATTGATGAAAAGATTAGCTATTTGGATATATTCAAAGTTGTGGAGCTAACATGTGAGAAGCATCAAAATGAATTGTTATCCTCTCCTTCCCTTGAGGAAATCATTCACTATGACCTGTGGGCGCGAGAATTTGCTGCTAGTTTGCAAGACTCTTCCAGCTTCACTCCTATTCTTGCATGA

Predicted protein sequences of Glyma17g09740

Limit To All Plant Sequences

>Glyma17g09740.1   sequence type=predicted peptide   gene model=Glyma17g09740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMALNISSPAEVKSIFFADYFKSNCITAKFTGGFAFKRKERGAASGGRVCCSVLAPPPPAWPGRAVPEQGSKTWDGPKPISIVGCTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVKRFKPQLVAVRNESLIAELKEALHDVEEKPEIIPGEQGIIEVARHPDAVSVVTGIVGCAGLKPTVAAIEAGKYIALANKETLIAGGPFVLPLAQKHNVKILPADSEHSAIFQCIQGLPEGALRRVILTASGGAFRDWPVDKLKDVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLFGADYDHIEIVIHPQSIIHSMIETQDSSVLAQLGWPDMRLPILYTLSWPDRIYCSEDTWPCLDLCKIGSLTFKTPDNVKYPSMNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKISYLDIFKVVELTCEKHQNELLSSPSLEEIIHYDLWAREFAASLQDSSSFTPILA*

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