Glyma17g09720 - SoyBase

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Report for Sequence Feature Glyma17g09720

Feature Type:	gene_model
Chromosome:	Gm17
Start:	7219127
stop:	7223407
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g09720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62520	AT	Annotation by Michelle Graham. TAIR10: similar to RCD one 5 \| chr5:25098071-25099264 FORWARD LENGTH=309	SoyBase	E_val: 2.00E-61	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0072593	GO-bp	Annotation by Michelle Graham. GO Biological Process: reactive oxygen species metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003950	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NAD+ ADP-ribosyltransferase activity	SoyBase	N/A	ISS
PTHR14453	Panther	PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN	JGI		ISS
PTHR14453:SF5	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF12174	PFAM	RST domain of plant C-terminal	JGI		ISS
UniRef100_I1MTH3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MTH3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9FJJ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Probable inactive poly [ADP-ribose] polymerase SRO5 n=1 Tax=Arabidopsis thaliana RepID=SRO5_ARATH	SoyBase	E_val: 9.00E-59	ISS

Expression Patterns of Glyma17g09720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g09720

Paralog	Evidence	Comments
Glyma05g02210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g09720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g089400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g09720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g09720

Limit To All Plant Sequences

>Glyma17g09720.2   sequence type=transcript   gene model=Glyma17g09720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAGGTTGCAAAAATTGACCTTTGCCTTAATGCCCAAGGATGCACGTTCCAAAGTCGGTCATTCCTTCCTTCAATTAACGCTTTCTTCCACCGCCTAAGCCAGTCCTTTTTTCTTTCCATGCCGGTTTCCGTTACCTCTTCCCCTTTTCTTCTCTTTTCATTACTACCAACTCTTTTAATCTAATTTCCCCCAAATTCTTTTATTATTTTGCTCATAACCCCAATTTTCAATTTCCTCTTTCTTCCCTTACGTTATGGACCCACCAATTCACCATCCACTTGGGAAACGCCCTGCCGCCGAGGACGATTCCGTAATTTCCGATTGCGAGAGCGGGGTTTCCGGGGGCGACACGGCGGCTGGCTTTGTGCCGGCCGACGAAAACGCCGACCTCGTCCGGACCAGATTCGTTCGTGGCCTGGCCGCGCACGGGTTGAAACCCGAGGTTTTGGCGGTTGGCAGAAACGCGTGTTCCTCCGTTATGGCGCAAGCGCGTCAACATTCCTTTCACGTTTTTGCACGTGCCGTGGCCAAATTGCGCGACGGCAATGCCAACGTCAAGTTCGCCTGGTACGGTGCGTCCAGTAAGGAAGAGATAAGCGACATCGTTCAGAATGGTTTTTTCGGTCACGCTCACGGTAACGGCCTGCGTCTCTTTCCACAAGATTCTCCACTTGAAAGTGTGAAGAGTTCTGTTGTGGACAAAGACGGTTTGAGGCACTTGTTGCTGTGTCGCGTTATCTTGGGGAAGACAGAGTTGGTGCCACGTGACTCCAATCAATGCCGTTCGAGTTCTGAGGAGTTTGATTCTGGTGTGGACGATCTTTCCAATCCAAAGGAGTATGTTATTTGGTGTAACCAGATCAACACTCATGTTTTGCCCGAATATGTTTTGAGTTTCAGATTTCCTTCACCATTGAAAGGGCATGTGAAGATTGGGGAACCTTTGAGGCCTTCTTCGCCGTGGATGGCATTCCCAGCTTTGATTTCGGTGCTTTCGAAGATTTTACCTCCCCCTGACATTGCCTACATTGCCAAGTTCCACAAGGATTATAGAGAAAAGAGGATTTCTCGACATGAGCTGATACAGAAAGTGAGAGTTATAGCTGGCGACAAATTGCTATTTTCCGTCATCAAATCTTTCAGAGCCAAGAAAATACCTGCAAGCTTTAAAGCAAACAAGGGGAATGAATGGCAGGCGGAAAGCCAGCAGCTCGAACGGTATGATTGTTCATATGGGAGTTCTATTAACTATTACAGGAAGTGAATAGAATACTTGAAGAAACACAATGCTCAGACTAACCAAACATACATTGAGGGTGCAAGTGCAACCACTGCTTAAGAAGTAGAGCGTCATTTGAGACCTTTTAAATTGTTTTTAGGGTGATATACTGATATAGTTGATTTATTTTGATGATGATGATGATAGTGTAGCAGAAGAAATAACTTTTGCTTTCTGGTTGGTTACAGTTACTGGTTGAAATAAATATACTTCGGTTTGGACATTTACCATAGTTACTCCAATTTGCCGACTTTAAATTTTCCTATATTTTCTTTGCACATGGGATAGGGGACATGGGTGCTCATTGGTTAGTTTGGTAAATTCTGAAAAATCAAATCAAACTGAGTTTGTTCAGTTTGGTTTGTGAGTTTAGATCCAAATTGTTTCGTGCATTTGTTTCATGATTTATAACTTAATGACCTCTTATAACTCAGATTCAAGTCTTTTTTACTTACATGCACAAAATGACTTACTTTTAGTAAGTCTATTAATTTGGACTTCATTATTATTATATTTTTACTTGCATAGGCAATTGAAACAAATATTCATGTTTTGGGATTCAACAGATAAAAGCAAAATGAATACAAAAACAAGGGTTATGATCTGTTGGCTAAATTACTTTTGTCTCGAACGTAATTTTGCAACTACAAATCAAACATGCAATTAGTTTGGTACGCAA

Coding sequences of Glyma17g09720

Limit To All Plant Sequences

>Glyma17g09720.1   sequence type=CDS   gene model=Glyma17g09720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCCACCAATTCACCATCCACTTGGGAAACGCCCTGCCGCCGAGGACGATTCCGTAATTTCCGATTGCGAGAGCGGGGTTTCCGGGGGCGACACGGCGGCTGGCTTTGTGCCGGCCGACGAAAACGCCGACCTCGTCCGGACCAGATTCGTTCGTGGCCTGGCCGCGCACGGGTTGAAACCCGAGGTTTTGGCGGTTGGCAGAAACGCGTGTTCCTCCGTTATGGCGCAAGCGCGTCAACATTCCTTTCACGTTTTTGCACGTGCCGTGGCCAAATTGCGCGACGGCAATGCCAACGTCAAGTTCGCCTGGTACGGTGCGTCCAGTAAGGAAGAGATAAGCGACATCGTTCAGAATGGTTTTTTCGGTCACGCTCACGGTAACGGCCTGCGTCTCTTTCCACAAGATTCTCCACTTGAAAGTGTGAAGAGTTCTGTTGTGGACAAAGACGGTTTGAGGCACTTGTTGCTGTGTCGCGTTATCTTGGGGAAGACAGAGTTGGTGCCACGTGACTCCAATCAATGCCGTTCGAGTTCTGAGGAGTTTGATTCTGGTGTGGACGATCTTTCCAATCCAAAGGAGTATGTTATTTGGTGTAACCAGATCAACACTCATGTTTTGCCCGAATATGTTTTGAGTTTCAGATTTCCTTCACCATTGAAAGGGCATGTGAAGATTGGGGAACCTTTGAGGCCTTCTTCGCCGTGGATGGCATTCCCAGCTTTGATTTCGGTGCTTTCGAAGATTTTACCTCCCCCTGACATTGCCTACATTGCCAAGTTCCACAAGGATTATAGAGAAAAGAGGATTTCTCGACATGAGCTGATACAGAAAGTGAGAGTTATAGCTGGCGACAAATTGCTATTTTCCGTCATCAAATCTTTCAGAGCCAAGAAAATACCTGCAAGCTTTAAAGCAAACAAGGGGAATGAATGGCAGGCGGAAAGCCAGCAGCTCGAACGATAA

>Glyma17g09720.2   sequence type=CDS   gene model=Glyma17g09720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCCACCAATTCACCATCCACTTGGGAAACGCCCTGCCGCCGAGGACGATTCCGTAATTTCCGATTGCGAGAGCGGGGTTTCCGGGGGCGACACGGCGGCTGGCTTTGTGCCGGCCGACGAAAACGCCGACCTCGTCCGGACCAGATTCGTTCGTGGCCTGGCCGCGCACGGGTTGAAACCCGAGGTTTTGGCGGTTGGCAGAAACGCGTGTTCCTCCGTTATGGCGCAAGCGCGTCAACATTCCTTTCACGTTTTTGCACGTGCCGTGGCCAAATTGCGCGACGGCAATGCCAACGTCAAGTTCGCCTGGTACGGTGCGTCCAGTAAGGAAGAGATAAGCGACATCGTTCAGAATGGTTTTTTCGGTCACGCTCACGGTAACGGCCTGCGTCTCTTTCCACAAGATTCTCCACTTGAAAGTGTGAAGAGTTCTGTTGTGGACAAAGACGGTTTGAGGCACTTGTTGCTGTGTCGCGTTATCTTGGGGAAGACAGAGTTGGTGCCACGTGACTCCAATCAATGCCGTTCGAGTTCTGAGGAGTTTGATTCTGGTGTGGACGATCTTTCCAATCCAAAGGAGTATGTTATTTGGTGTAACCAGATCAACACTCATGTTTTGCCCGAATATGTTTTGAGTTTCAGATTTCCTTCACCATTGAAAGGGCATGTGAAGATTGGGGAACCTTTGAGGCCTTCTTCGCCGTGGATGGCATTCCCAGCTTTGATTTCGGTGCTTTCGAAGATTTTACCTCCCCCTGACATTGCCTACATTGCCAAGTTCCACAAGGATTATAGAGAAAAGAGGATTTCTCGACATGAGCTGATACAGAAAGTGAGAGTTATAGCTGGCGACAAATTGCTATTTTCCGTCATCAAATCTTTCAGAGCCAAGAAAATACCTGCAAGCTTTAAAGCAAACAAGGGGAATGAATGGCAGGCGGAAAGCCAGCAGCTCGAACGGTATGATTGTTCATATGGGAGTTCTATTAACTATTACAGGAAGTGA

Predicted protein sequences of Glyma17g09720

Limit To All Plant Sequences

>Glyma17g09720.1   sequence type=predicted peptide   gene model=Glyma17g09720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPPIHHPLGKRPAAEDDSVISDCESGVSGGDTAAGFVPADENADLVRTRFVRGLAAHGLKPEVLAVGRNACSSVMAQARQHSFHVFARAVAKLRDGNANVKFAWYGASSKEEISDIVQNGFFGHAHGNGLRLFPQDSPLESVKSSVVDKDGLRHLLLCRVILGKTELVPRDSNQCRSSSEEFDSGVDDLSNPKEYVIWCNQINTHVLPEYVLSFRFPSPLKGHVKIGEPLRPSSPWMAFPALISVLSKILPPPDIAYIAKFHKDYREKRISRHELIQKVRVIAGDKLLFSVIKSFRAKKIPASFKANKGNEWQAESQQLER*

>Glyma17g09720.2   sequence type=predicted peptide   gene model=Glyma17g09720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPPIHHPLGKRPAAEDDSVISDCESGVSGGDTAAGFVPADENADLVRTRFVRGLAAHGLKPEVLAVGRNACSSVMAQARQHSFHVFARAVAKLRDGNANVKFAWYGASSKEEISDIVQNGFFGHAHGNGLRLFPQDSPLESVKSSVVDKDGLRHLLLCRVILGKTELVPRDSNQCRSSSEEFDSGVDDLSNPKEYVIWCNQINTHVLPEYVLSFRFPSPLKGHVKIGEPLRPSSPWMAFPALISVLSKILPPPDIAYIAKFHKDYREKRISRHELIQKVRVIAGDKLLFSVIKSFRAKKIPASFKANKGNEWQAESQQLERYDCSYGSSINYYRK*

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