Glyma17g09710 - SoyBase

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Report for Sequence Feature Glyma17g09710

Feature Type:	gene_model
Chromosome:	Gm17
Start:	7203819
stop:	7206839
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g09710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62940	AT	Annotation by Michelle Graham. TAIR10: Dof-type zinc finger DNA-binding family protein \| chr5:25257183-25258504 REVERSE LENGTH=372	SoyBase	E_val: 7.00E-52	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0010067	GO-bp	Annotation by Michelle Graham. GO Biological Process: procambium histogenesis	SoyBase	N/A	ISS
GO:0010087	GO-bp	Annotation by Michelle Graham. GO Biological Process: phloem or xylem histogenesis	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF02701	PFAM	Dof domain, zinc finger	JGI		ISS
UniRef100_G7J5F5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dof zinc finger protein n=1 Tax=Medicago truncatula RepID=G7J5F5_MEDTR	SoyBase	E_val: 7.00E-122	ISS
UniRef100_UPI000233F1F3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F1F3 related cluster n=1 Tax=unknown RepID=UPI000233F1F3	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g09710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g09710

Paralog	Evidence	Comments
Glyma05g02220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g09710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g089300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g09710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g09710

Limit To All Plant Sequences

>Glyma17g09710.2   sequence type=CDS   gene model=Glyma17g09710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTTTCCTCTCTCCACGTCTGCATGGACTCATCAAATCACTGGATGCAGGGAATAATTCACGAGGAGTGTGGTGGGGTGGATTCTTCTTCACCCTCTGGCGACATGCTTCCATGCTCGAGGCCAATGACAGAGAGAAGGCTAAGACCCCCGCAAGAGCAATCCCTCAAGTGCCCTAGGTGTGAATCAACACACACCAAGTTCTGCTACTACAACAACTACAGCCTCACTCAGCCCAGGTACTTCTGCAAGACATGTAGAAGGTACTGGACCAAAGGAGGCACTCTTAGGAACATTCCTGTTGGTGGTGGTTGCAGAAAGAACAAGAAAGTTTCTACTAAGAAAATCATTAATGACCAACACCAACCAGCTATTAGTACTCAAAACCAAGTACACCACCCTGGACCCTCTTATCTTCATAATCACAAAGATCTTCAACTTCCCTACCTTGATGTGCAATTTTCTCACCTCAACAATTTGCTTGGGACTAATGCTGGTGCACTTGGAAACCCTACTTTTATGGAGAGTAAGTATAACATGGGCATGCTTGAGAACCCTAGGCCTATTGACTTCATGGAAAGCAGGTTGGATGGTATGAATATGATTAGGGGTTCCACTAGGAGTTTTGAGCTTCTTGAAAATAGTGATATGACTGTTGGGTTTGGTGATGTGAGTGGCTACAATGGATCGCCATTGAATTATCAAGCTATTTCCTCTTCAGCATTTGGAGGTATGTCCCTTGATGGAAACATTAGCAATGTTGGAACTTATATAATGGACTCTTGCCAGCGACTTATGTTGCCCTATGATGGAGGTGACAACACCCTTAATGGTTCAATTGATGTGAAGCCAAACCCTAAGCTGTTGTCCCTTGAATGGCAAGATCATCAGGGTTGCTCTGGTGCTGAAAAAGTGTCATTGGGATATCTTGATGGATCAGGGTCATCATGGACCGGCTATGGATCTTCCACAACAAACCCTTTGGTCTAG

Predicted protein sequences of Glyma17g09710

Limit To All Plant Sequences

>Glyma17g09710.2   sequence type=predicted peptide   gene model=Glyma17g09710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFSSLHVCMDSSNHWMQGIIHEECGGVDSSSPSGDMLPCSRPMTERRLRPPQEQSLKCPRCESTHTKFCYYNNYSLTQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSTKKIINDQHQPAISTQNQVHHPGPSYLHNHKDLQLPYLDVQFSHLNNLLGTNAGALGNPTFMESKYNMGMLENPRPIDFMESRLDGMNMIRGSTRSFELLENSDMTVGFGDVSGYNGSPLNYQAISSSAFGGMSLDGNISNVGTYIMDSCQRLMLPYDGGDNTLNGSIDVKPNPKLLSLEWQDHQGCSGAEKVSLGYLDGSGSSWTGYGSSTTNPLV*

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