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Report for Sequence Feature Glyma17g09690

Feature Type:gene_model
Chromosome:Gm17
Start:7171761
stop:7186015
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g09690
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G16750AT Annotation by Michelle Graham. TAIR10: Transducin family protein / WD-40 repeat family protein | chr5:5504541-5509266 REVERSE LENGTH=876 SoyBaseE_val: 0ISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0006406GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus SoyBaseN/AISS
GO:0006606GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into nucleus SoyBaseN/AISS
GO:0007062GO-bp Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009880GO-bp Annotation by Michelle Graham. GO Biological Process: embryonic pattern specification SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009933GO-bp Annotation by Michelle Graham. GO Biological Process: meristem structural organization SoyBaseN/AISS
GO:0010072GO-bp Annotation by Michelle Graham. GO Biological Process: primary shoot apical meristem specification SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0010182GO-bp Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0010431GO-bp Annotation by Michelle Graham. GO Biological Process: seed maturation SoyBaseN/AISS
GO:0010564GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0019915GO-bp Annotation by Michelle Graham. GO Biological Process: lipid storage SoyBaseN/AISS
GO:0045595GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell differentiation SoyBaseN/AISS
GO:0048366GO-bp Annotation by Michelle Graham. GO Biological Process: leaf development SoyBaseN/AISS
GO:0048825GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon development SoyBaseN/AISS
GO:0050826GO-bp Annotation by Michelle Graham. GO Biological Process: response to freezing SoyBaseN/AISS
GO:0051301GO-bp Annotation by Michelle Graham. GO Biological Process: cell division SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
KOG0319 KOG WD40-repeat-containing subunit of the 18S rRNA processing complex JGI ISS
PTHR19854Panther TRANSDUCIN BETA-LIKE 3 JGI ISS
PTHR19854:SF22Panther SUBFAMILY NOT NAMED JGI ISS
PF00400PFAM WD domain, G-beta repeat JGI ISS
PF08625PFAM Utp13 specific WD40 associated domain JGI ISS
UniRef100_B9S245UniRef Annotation by Michelle Graham. Most informative UniRef hit: U3 small nucleolar RNA-associated protein, putative n=1 Tax=Ricinus communis RepID=B9S245_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233F1F2UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F1F2 related cluster n=1 Tax=unknown RepID=UPI000233F1F2 SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g09690
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g09690
ParalogEvidenceComments
Glyma05g02240 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g09690 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g089100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g09690
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g09690
>Glyma17g09690.1   sequence type=CDS   gene model=Glyma17g09690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCCCCTACGATTGAAGACCAACTACCGCTGCGTCCCCGCTCTGCAGCAGTTCTACACTGGCGGCCCCTTCGTCGTCTCATCGGACTCCTCCTTCATCGCCTGCGCCTGCGGCGAGTCCATCAAGATCGTCGATTCAGCCACTGCCGCCATACGCTCCACCCTCGATGCCGACTCTGAATCCTTCACCGCCTTGGCTCTCAGCCCCGACGACCGCCTCCTCTTCTCCTCCGGCCACTCCCGCCAAATCAGAGTCTGGGACTTGTCCACGCTTAAGTGCGTCCGCTCCTGGAAGGGTCACGAGGGTCCGGTTATGTGCATGACGTGTCACCCTTCTGGAGGGTTGCTTGCTACTGGTGGAGCAGATAGGAAGGTTCTAGTGTGGGATGTGGATGGTGGTTACTGCACTCACTACTTTAAAGGTCACGGTGGTGTTGTTTCTTGTGTTATGTTCCATTCCGATCCTGAGAAGCAGCTTCTTTTTTCTGGCAGTGATGATGGTGGTGATCATGCAACTGTAAGGGTTTGGGATATTTCCAAGACCAAGAAAAAGAACTGCATTGCAACACTAGATAATCATAGCTCAGCAGTGACTTCTTTGGCATTATCTGAAGACGGATGGACACTGCTTAGTGCTGGAAGAGATAAGGTTGTAACATTGTGGGATCTTCATGGTTATAGTGGCAAGAAGACTGTCATTACAAATGAGGCAGTTGAAGCTGTTTGTGTAATTGGTGCTGGGAGTCCTTTTGCTTCATCTCTCGATTTATATCAGCAAAATGCAAAAATACATGATGGTTCCGAAATATTCTATTTCATTACAGTTGGTGAAAGAGGCATTGTACGCATATGGAATTCCAAAGGTGCAGGTTGCATCTTTGAGCAAAAAACTTCAGATGTTACAGCCGGCATGGATGAGGATGGCTCACGTAGGGGTTTCACTTCTGCTGTTATGCTTGCCTCAGATCAAGGATTGCTTTGTGTAACTGCAGATCAGCAGTTTCTGTTTTACTCTCTGGACTTCACTGAACAGTTGTTGCAATTAAATCTAACCAAAAGACTTGTGGGATATAATGAAGAGATTGTAGATATGAAGTTTATTGGGGATGATGAAAAATTCCTTGCTCTTGCTACAAATCTTGAACAGATTCGGGTTTATGACCTTTCATCTATGTCATGTTCGTATGTCTTATCTGGTCACACTGAAATTGTTCTATGCCTTGACTCCTGTGTATCAAGTTCTGGGAAACCACTGATTGTTACTGGAAGTAAAGACAACAGTGTTAGGTTATGGGAACCAGAAAGTGCAAACTGCATTGGAGTTGGTATAGGTCACATGGGAGCTGTTGGAGCCATTGCCTTTTCAAAAAGAAAGCGAGATTTCTTTGTTAGTGGCAGTAGTGATCATACTCTTAAGGTGTGGAGTATGGATGGTCTCTTGGACAATATGACAGTGCCAATTAATTTAAAAGCAAAAGCTGTTGTTGCAGCTCATGATAAAGATATAAATTCTGTAGCTGTTGCTCCAAATGATAGTTTAGTATGTAGTGGTTCTCAGGATCGTACAGCTTGTGTTTGGAGACTTCCAGATCTAGTATCTGTAGTTGTATTTAAAGGTCATAAAAGAGGAATTTGGTCAGTAGAATTTTCTCCTGTTGATCAATGTGTAGTAACAGCATCTGGTGATAAGACAATAAGGATATGGGCTATATCTGATGGCTCCTGTTTGAAGACATTTGAAGGACACACTTCAAGTGTGTTAAGAGCATTGTTTGTTACTCGTGGAACACAAATTGTTTCTTGTGGTGCTGATGGCTTAGTAAAGCTGTGGACTGTAAAAACTAATGAATGTGTTGCTACTTATGATCATCATGAAGACAAGGTTTGGGCCTTGGCTGTAGGCAGGAAAACAGAAAAGCTTGCAACGGGTGGCGGAGATGCTGTTGTCAATTTATGGTTTGACTCCACTGCAGCTGACAAAGAAGAGGCTTTCCGTAAAGAGGAAGAGGGAGTTGTGAAAGGTCAAGAGCTAGAGAATGCTGTCTCAGATGCTGACTATACTAAAGCAATCCAAATTGCATTTGAACTGCGCAGGCCTCATAGGCTTTTTGAGCTATTTGCAGAACTTTGCAGGAAGAGAGAGGCTGAAGATCATATGGACAGAGCACTTAAGGGCTTGGATAGTGAAGAACTTCGTATATTATTTAACTATGTTCGAGAATGGAATACAAAACCAAAGCTTTGTTATGTTTCTCAGTTCGTGCTTTTCAGAGTTTTCTGCATCTTTCCTCCAACAGATATTGTTCAGATTAAAGGGATTGGTGAATATCTTGAAGGTCTTATCCCGTATAGTCAAAGGCATTTTGGCAGGATAGATAGACTTGTTAGAAGCACATTTTTGTTAGACTACATTCTATCAGGAATGTCTGTTATTGAACCACAAGCTCAACTGACAGAATCAAAGACTGAGTTACTGTTGCAGTCTGAAATTGGCATTCCAGATCCGGACAAAGAAAATGACACTAATGAAATTACCGCTTCAAAGAAAAGGAAATCAAACAAATCAAAACATGGTTCCCATAAGAAAGTTAAGAATGTAGCTTACAACAAGGTCGAATCTATACAATTACAGGCATAG
Predicted protein sequences of Glyma17g09690
>Glyma17g09690.1   sequence type=predicted peptide   gene model=Glyma17g09690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPLRLKTNYRCVPALQQFYTGGPFVVSSDSSFIACACGESIKIVDSATAAIRSTLDADSESFTALALSPDDRLLFSSGHSRQIRVWDLSTLKCVRSWKGHEGPVMCMTCHPSGGLLATGGADRKVLVWDVDGGYCTHYFKGHGGVVSCVMFHSDPEKQLLFSGSDDGGDHATVRVWDISKTKKKNCIATLDNHSSAVTSLALSEDGWTLLSAGRDKVVTLWDLHGYSGKKTVITNEAVEAVCVIGAGSPFASSLDLYQQNAKIHDGSEIFYFITVGERGIVRIWNSKGAGCIFEQKTSDVTAGMDEDGSRRGFTSAVMLASDQGLLCVTADQQFLFYSLDFTEQLLQLNLTKRLVGYNEEIVDMKFIGDDEKFLALATNLEQIRVYDLSSMSCSYVLSGHTEIVLCLDSCVSSSGKPLIVTGSKDNSVRLWEPESANCIGVGIGHMGAVGAIAFSKRKRDFFVSGSSDHTLKVWSMDGLLDNMTVPINLKAKAVVAAHDKDINSVAVAPNDSLVCSGSQDRTACVWRLPDLVSVVVFKGHKRGIWSVEFSPVDQCVVTASGDKTIRIWAISDGSCLKTFEGHTSSVLRALFVTRGTQIVSCGADGLVKLWTVKTNECVATYDHHEDKVWALAVGRKTEKLATGGGDAVVNLWFDSTAADKEEAFRKEEEGVVKGQELENAVSDADYTKAIQIAFELRRPHRLFELFAELCRKREAEDHMDRALKGLDSEELRILFNYVREWNTKPKLCYVSQFVLFRVFCIFPPTDIVQIKGIGEYLEGLIPYSQRHFGRIDRLVRSTFLLDYILSGMSVIEPQAQLTESKTELLLQSEIGIPDPDKENDTNEITASKKRKSNKSKHGSHKKVKNVAYNKVESIQLQA*






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