Glyma17g09670 - SoyBase

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Report for Sequence Feature Glyma17g09670

Feature Type:	gene_model
Chromosome:	Gm17
Start:	7167075
stop:	7169151
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g09670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G22220	AT	Annotation by Michelle Graham. TAIR10: SufE/NifU family protein \| chr4:11759444-11760881 REVERSE LENGTH=167	SoyBase	E_val: 8.00E-87	ISS
GO:0016226	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005198	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural molecule activity	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0051536	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding	SoyBase	N/A	ISS
KOG3361	KOG	Iron binding protein involved in Fe-S cluster formation	JGI		ISS
PTHR10093	Panther	NITROGEN FIXATION PROTEIN NIFU	JGI		ISS
PF01592	PFAM	NifU-like N terminal domain	JGI		ISS
UniRef100_B7FHC6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Iron sulfur cluster assembly protein n=1 Tax=Medicago truncatula RepID=B7FHC6_MEDTR	SoyBase	E_val: 3.00E-90	ISS
UniRef100_C6T2J7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T2J7_SOYBN	SoyBase	E_val: 3.00E-117	ISS

Expression Patterns of Glyma17g09670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g09670

Paralog	Evidence	Comments
Glyma05g02260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g09670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g088900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g09670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g09670

Limit To All Plant Sequences

>Glyma17g09670.2   sequence type=transcript   gene model=Glyma17g09670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTAGTTCCTTGCAAAAAAAAACAAAATAAAATAAGCGAGTTGTTATTATTTTCCTTCCCATTTTCGTGGCATTCCTCTCTCTCGTGTCGGGTGAAGGGAAAAATCAAATCAACATGCTGAGAGTGGGCGCAAAGAGGGTTTTGGAAACGACGTTGTTTGGGGTTAGGGTTCCGGCGAGGCTGTACCACGAGAGGGTTGTGGATCACTACGACAACCCCCGGAACGTTGGATCGTTTGACAAGAACGACCCGAGCGTGGGGACGGGTTTGGTGGGGGCCCCGGCGTGCGGCGATGTGATGAAGCTCCAGATTAAGGTCGACGACAAAACCGGAAAAATCGTCGATGCTCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACCATGCTTGCTGAAGATGCTATCAAAGCGGCCGTTAAAGACTATGAAGCTAAGCGTGCTAAGGCAACTGCTAGCGGAGAGGCAGCAACAGAAGAGAAGCCTGCCACTGCATGATTTCTTTCATATATAGAAAGAATGATGACGAAAACAACCGTTTGTTTGTTTGTTTATTCTTAATCAGTTTCTTATCGAAGAGCACCTTCACTTGAGACTTTGGGTTGGACTTAGCTGGAGAGTATTCACATTCTGTGAACTAAATATTTGAAATGCCAGCTATGGTTTGTTATCTTCTCGGTTTGTATTTAGTAGTACTGCATTATTAAATGTGTAAGAATGCTATAAAGCAGATTTGAATGTTTGAAAGTTCCCCAATACAATTAAGTGAATAGCATGATATTTTCACAAGTTTTGTTCCCGAAGTCCTATTTTTGTAATATATTTGTTTTTTTTCTTCTTTTTATTTGGTGAATTTGCAATTCGACTTTATTATCTTGAAATGAAAATA

Coding sequences of Glyma17g09670

Limit To All Plant Sequences

>Glyma17g09670.1   sequence type=CDS   gene model=Glyma17g09670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGAGAGTGGGCGCAAAGAGGGTTTTGGAAACGACGTTGTTTGGGGTTAGGGTTCCGGCGAGGCTGTACCACGAGAGGGTTGTGGATCACTACGACAACCCCCGGAACGTTGGATCGTTTGACAAGAACGACCCGAGCGTGGGGACGGGTTTGGTGGGGGCCCCGGCGTGCGGCGATGTGATGAAGCTCCAGATTAAGGTCGACGACAAAACCGGAAAAATCGTCGATGCTCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACTGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTCCACTGCAGCATGCTTGCTGAAGATGCTATCAAAGCGGCCGTTAAAGACTATGAAGCTAAGCGTGCTAAGGCAACTGCTAGCGGAGAGGCAGCAACAGAAGAGAAGCCTGCCACTGCATGA

>Glyma17g09670.2   sequence type=CDS   gene model=Glyma17g09670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGAGAGTGGGCGCAAAGAGGGTTTTGGAAACGACGTTGTTTGGGGTTAGGGTTCCGGCGAGGCTGTACCACGAGAGGGTTGTGGATCACTACGACAACCCCCGGAACGTTGGATCGTTTGACAAGAACGACCCGAGCGTGGGGACGGGTTTGGTGGGGGCCCCGGCGTGCGGCGATGTGATGAAGCTCCAGATTAAGGTCGACGACAAAACCGGAAAAATCGTCGATGCTCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATACCATGCTTGCTGAAGATGCTATCAAAGCGGCCGTTAAAGACTATGAAGCTAAGCGTGCTAAGGCAACTGCTAGCGGAGAGGCAGCAACAGAAGAGAAGCCTGCCACTGCATGA

Predicted protein sequences of Glyma17g09670

Limit To All Plant Sequences

>Glyma17g09670.1   sequence type=predicted peptide   gene model=Glyma17g09670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRVGAKRVLETTLFGVRVPARLYHERVVDHYDNPRNVGSFDKNDPSVGTGLVGAPACGDVMKLQIKVDDKTGKIVDARFKTFGCGSAIASSSVATEWVKGRQMEEVLTIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKATASGEAATEEKPATA*

>Glyma17g09670.2   sequence type=predicted peptide   gene model=Glyma17g09670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRVGAKRVLETTLFGVRVPARLYHERVVDHYDNPRNVGSFDKNDPSVGTGLVGAPACGDVMKLQIKVDDKTGKIVDARFKTFGCGSAIASSSVATEWVKGRQMEEVLTIKNTMLAEDAIKAAVKDYEAKRAKATASGEAATEEKPATA*

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