Glyma17g09620 - SoyBase

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Report for Sequence Feature Glyma17g09620

Feature Type:	gene_model
Chromosome:	Gm17
Start:	7123333
stop:	7127607
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g09620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PTHR14289	Panther	F-BOX ONLY PROTEIN 3	JGI		ISS
PTHR14289:SF12	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF02151	PFAM	UvrB/uvrC motif	JGI		ISS
PF04379	PFAM	Protein of unknown function (DUF525)	JGI		ISS
UniRef100_B8Q896	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SKIP interacting protein 10 (Fragment) n=1 Tax=Oryza sativa Indica Group RepID=B8Q896_ORYSI	SoyBase	E_val: 1.00E-121	ISS
UniRef100_I1MTG3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTG3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g09620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g09620

Paralog	Evidence	Comments
Glyma05g02320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g09620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g088400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g09620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g09620

Limit To All Plant Sequences

>Glyma17g09620.1   sequence type=CDS   gene model=Glyma17g09620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATCGTTATCGTTGAGTATGAGTCTGAGGAGTAGTAGCTTAGTGAATTTTCTTTTGCTGGGTTCAGAGACGAGAGTGAGAAGCAGAAGGAGTGTCATCGTAGCGTGTGCTTCAGAGGGAGACAGTGGCAGCAGTAGCACAAGCTCGTTTCTCTCTCGGACCCAAACCTACGCTCTTCTTAAGCAACAATTGCAAGTAGCTGCTAAATCCGAGGATTACAAGGAAGCCGCTAGAATTCGAGACTCGTTGAAGCTATTTGAGGACGAGGAACCTGTTTTGCGTCTGAGGAGACTATTGAAGGAAGCAGTTGCTGAAGAGAGATTTCAGGATGCTGCTAGTTATCGTGATGAGCTAAACAAAATTGCTCCACACTCTCTTTTAAAATGTTGCAGTGATGCTACAACATTGGGAATCAGGGTTCAAGTTAGGAGTGTATATATAGAGGGCAGAAGTCAGCCTTCAAAGGGGCTATATTTCTTTGCATATAGAATAAGAATTACTAATAACTCAGAACACCCTGTTCAACTTCTTAGAAGGCATTGGATTATAACTGATGCTAATGGGAGAACGGAAAATGTCTGGGGAATTGGAGTTGTTGGTGAACAGCCATTAATACTTCCTGGGAATAGTTTTGAATACTCTTCAGCATGCCCACTGAACACACCAAATGGTAGAATGGAAGGTGATTATGAGATGATCCATGTAGAAAGAGTAGGCTCACAATCATTCAATGTGGCCATTGCCCCGTTTTCTCTCTGTCTGCTTGGAGATGATGAAGGTTGTATTATTTAA

Predicted protein sequences of Glyma17g09620

Limit To All Plant Sequences

>Glyma17g09620.1   sequence type=predicted peptide   gene model=Glyma17g09620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSLSLSMSLRSSSLVNFLLLGSETRVRSRRSVIVACASEGDSGSSSTSSFLSRTQTYALLKQQLQVAAKSEDYKEAARIRDSLKLFEDEEPVLRLRRLLKEAVAEERFQDAASYRDELNKIAPHSLLKCCSDATTLGIRVQVRSVYIEGRSQPSKGLYFFAYRIRITNNSEHPVQLLRRHWIITDANGRTENVWGIGVVGEQPLILPGNSFEYSSACPLNTPNGRMEGDYEMIHVERVGSQSFNVAIAPFSLCLLGDDEGCII*

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