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Report for Sequence Feature Glyma17g09551

Feature Type:gene_model
Chromosome:Gm17
Start:7075568
stop:7088986
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g09551
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G19100AT Annotation by Michelle Graham. TAIR10: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr1:6595560-6601159 FORWARD LENGTH=663 SoyBaseE_val: 0ISS
GO:0007062GO-bp Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion SoyBaseN/AISS
GO:0009855GO-bp Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry SoyBaseN/AISS
GO:0009887GO-bp Annotation by Michelle Graham. GO Biological Process: organ morphogenesis SoyBaseN/AISS
GO:0010051GO-bp Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation SoyBaseN/AISS
GO:0031048GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA SoyBaseN/AISS
GO:0031935GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of chromatin silencing SoyBaseN/AISS
GO:0045132GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation SoyBaseN/AISS
GO:0048439GO-bp Annotation by Michelle Graham. GO Biological Process: flower morphogenesis SoyBaseN/AISS
GO:0048519GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of biological process SoyBaseN/AISS
GO:0080188GO-bp Annotation by Michelle Graham. GO Biological Process: RNA-directed DNA methylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
PTHR23336Panther ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. JGI ISS
PTHR23336:SF8Panther SUBFAMILY NOT NAMED JGI ISS
UniRef100_B9RAZ5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RAZ5_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233E6A8UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E6A8 related cluster n=1 Tax=unknown RepID=UPI000233E6A8 SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g09551
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g09551 not represented in the dataset
Glyma17g09551 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g09551 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g087900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g09551
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma17g09551
>Glyma17g09551.2   sequence type=transcript   gene model=Glyma17g09551   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTTGCCTCTTGACATGACTTGTTCTAGAAGGTTCCGAAATGGACGCTACAAAACTACTGCACAAAAGGGGGGGGAATGGACGCTACATATGGAAATATGTGGTGAGGCGATACAGGGAACAAAAATGTCTTCTATAGAAATAGTGGATTTATGCAATAGTGATGATGACGAAGTGGAAAATGTAGGTTCCGAACCTGCAAAGAAACTAATTGAAATCAAGAAGGAAACATGCCAAGTAACGGAGAATATAATACAAGTAGCGTCTGAAGGAAATAGAAGCTCTAGTGCTCTAAGCACTTGTCATAGCTATTCCACTCGTCAAATGGAAGAAATGGTAGCGCCGTTGTATGTTGACGTTGATGACACAACTGGTCTTTCTCTGCCACCATTTTGTAGAAACTTCTGGAGAGCTGGATACCATCATGATAATAATGGCCTTTCTTCTAAACTCAACTTCCCAAATACTGGAAACTACTTGCATGTTCACCCTTTCTTCCTTCACTCAAATGCAACTTCACATAAGTGGGTATTTGGTGCTATTGCTGAGCTTATCGATAATGCAGTTGATGAGATCCAAAATGGGGCTACTTTTGTCTTTGTAGATAAAATTTTAAATCCAAAAGATGGAAGTCCAGCGTTGTTGATTAGAGACGATGGTGGTGGAATGGATCCAGAAGCAATGCGTCAATGCATGAGTTTTGGATTTTCAAACAAGTCAAAAATTGCAATTGGACAGTATGGAAATGGCTTCAAGACTGGTAGTATGAGACTGGGTGCAGATGTCATTGTCTTCAGCCGCCACCAGAATAATATGAAATTGACTCAAAGCATTGGACTTCTGTCTTATACATACTTGATGCAAACACAGCAAGACAGAGTTGTAGTCCCCATGGTGAATTATAAGTTTGATACATCAACTGGATACTTGGAAAGACTAAATGACGGAGAGCATTTTAGGTCGAATTTGTCCATACTGTTGCACTGGTCTCCATATCTATCAGAAGAAGAACTTCTGAAACTATTTGATGACATTGGAAATCATGGTACTAAAATTATTATCTTCAATTTATGGTTCAATGATGATGGCAATTTGGAGCTAGACTTTAATTCTGATCCCGAGGATATTCATATTGTCGGGGATATCAAGAAGATTGACACACATTCTGCCTCAAAGATAGTAAATGAGGGACACATTGCTAACCGTTTTCATTATTCTTTACATGCTTACTTGTCCATATTGTACTTGCGGATACCAGAAAGTTTTAGAATGATATTGCGAGGGCAAGTTGTGAAGCTACATAACATTGCAGATGATCTCAAATATACTGAATTTGTCTTGTATAGACCACAGTGTGGTAGTTCTAAAGAGGGAGTATCTGTAACAACAATTGGATTTGTTAAGGAAGCTCCTAAAGGGAACATCCATGGCTTCAATGTATATCACAAAAATCGGCTGATACTGCCATTTTGGAAGGTTGTAAACTATACAAATACTAGGGGTAGAGGAGTTGTTGATTATCTTGAGCCAACTCATAATAAGCAGGATTTTGAGAGAACTTCCCTGTTTCAAAAACTTGAACTACGCCTGAAGCAAATGACATGGGAGTACTGGGATTATCACTGTCATCTGATTGGGTATTGTAAAAGAAGCACTGGAGATCCAGGTGCTCCTCTTAATAAAAGGAAGACACATGGATCTATAGACCTTCATAAGATGAAAAGGCAAGCAATGCAAGAAAATGTTACAGTTGCTGGATGTGATCAGAATGTACTGACAACTGCATCTCCTACAGACCAGACGGTAGACCAAAGAATTATAAACTTGATGGAAGTGCAGAAAAAACTCTTGAAAGAATGTTTGAAATATGAAAAGGCAGAGGAAGAACTTAATCTTAAGGTTACACAGCTTAGAAGAAAAACTCAGGAAGCTAAGCATGAGTATGATACACTTATGGCCGAAGTAAAGTCCCTTGGATTATATTTATGGGAAGAAAATGGTAGTGTAGCTGTACCTCTTGTTTTTTAGAAAGGATGCTGTGTGTAAAATTATAAATAGTTTAGGCCAATCTATATAGGTCGGGCCTGTTATATTGTAAGTAGATAAAAGTGATCCACAGGAACTCCCAATATCATTGCATTTTTCTTGAAATGATATGTTCTTAAACATCTGGATTCTTATTTGGCGATAGGTAAATGGTTGCCGAAGTTTATGAAGGACAAAACTCGCATGGCATGGGGTTTGCTA
Coding sequences of Glyma17g09551
>Glyma17g09551.1   sequence type=CDS   gene model=Glyma17g09551   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTGTTCTAGAAGGTTCCGAAATGGACGCTACAAAACTACTGCACAAAAGGGGGGGGAATGGACGCTACATATGGAAATATGTGGTGAGGCGATACAGGGAACAAAAATGTCTTCTATAGAAATAGTGGATTTATGCAATAGTGATGATGACGAAGTGGAAAATGTAGGTTCCGAACCTGCAAAGAAACTAATTGAAATCAAGAAGGAAACATGCCAAGTAACGGAGAATATAATACAAGTAGCGTCTGAAGGAAATAGAAGCTCTAGTGCTCTAAGCACTTGTCATAGCTATTCCACTCGTCAAATGGAAGAAATGGTAGCGCCGTTGTATGTTGACGTTGATGACACAACTGGTCTTTCTCTGCCACCATTTTGTAGAAACTTCTGGAGAGCTGGATACCATCATGATAATAATGGCCTTTCTTCTAAACTCAACTTCCCAAATACTGGAAACTACTTGCATGTTCACCCTTTCTTCCTTCACTCAAATGCAACTTCACATAAGTGGGTATTTGGTGCTATTGCTGAGCTTATCGATAATGCAGTTGATGAGATCCAAAATGGGGCTACTTTTGTCTTTGTAGATAAAATTTTAAATCCAAAAGATGGAAGTCCAGCGTTGTTGATTAGAGACGATGGTGGTGGAATGGATCCAGAAGCAATGCGTCAATGCATGAGTTTTGGATTTTCAAACAAGTCAAAAATTGCAATTGGACAGTATGGAAATGGCTTCAAGACTGGTAGTATGAGACTGGGTGCAGATGTCATTGTCTTCAGCCGCCACCAGAATAATATGAAATTGACTCAAAGCATTGGACTTCTGTCTTATACATACTTGATGCAAACACAGCAAGACAGAGTTGTAGTCCCCATGGTGAATTATAAGTTTGATACATCAACTGGATACTTGGAAAGACTAAATGACGGAGAGCATTTTAGGTCGAATTTGTCCATACTGTTGCACTGGTCTCCATATCTATCAGAAGAAGAACTTCTGAAACTATTTGATGACATTGGAAATCATGGTACTAAAATTATTATCTTCAATTTATGGTTCAATGATGATGGCAATTTGGAGCTAGACTTTAATTCTGATCCCGAGGATATTCATATTGTCGGGGATATCAAGAAGATTGACACACATTCTGCCTCAAAGATAGTAAATGAGGGACACATTGCTAACCGTTTTCATTATTCTTTACATGCTTACTTGTCCATATTGTACTTGCGGATACCAGAAAGTTTTAGAATGATATTGCGAGGGCAAGTTGTGAAGCTACATAACATTGCAGATGATCTCAAATATACTGAATTTGTCTTGTATAGACCACAGTGTGGTAGTTCTAAAGAGGGAGTATCTGTAACAACAATTGGATTTGTTAAGGAAGCTCCTAAAGGGAACATCCATGGCTTCAATGTATATCACAAAAATCGGCTGATACTGCCATTTTGGAAGGTTGTAAACTATACAAATACTAGGGGTAGAGGAGTTGTTGGAATCTTGCAAGCAGATTATCTTGAGCCAACTCATAATAAGCAGGATTTTGAGAGAACTTCCCTGTTTCAAAAACTTGAACTACGCCTGAAGCAAATGACATGGGAGTACTGGGATTATCACTGTCATCTGATTGGGTATTGTAAAAGAAGCACTGGAGATCCAGGTGCTCCTCTTAATAAAAGGAAGACACATGGATCTATAGACCTTCATAAGATGAAAAGGCAAGCAATGCAAGAAAATGTTACAGTTGCTGGATGTGATCAGAATGTACTGACAACTGCATCTCCTACAGACCAGACGGTAGACCAAAGAATTATAAACTTGATGGAAGTGCAGAAAAAACTCTTGAAAGAATGTTTGAAATATGAAAAGGCAGAGGAAGAACTTAATCTTAAGGTTACACAGCTTAGAAGAAAAACTCAGGAAGCTAAGCATGAGTATGATACACTTATGGCCGAAGTAAAGTCCCTTGGATTATATTTATGGGAAGAAAATGGTAGTGTAGCTGTACCTCTTGTTTTTTAG

>Glyma17g09551.2   sequence type=CDS   gene model=Glyma17g09551   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTGTTCTAGAAGGTTCCGAAATGGACGCTACAAAACTACTGCACAAAAGGGGGGGGAATGGACGCTACATATGGAAATATGTGGTGAGGCGATACAGGGAACAAAAATGTCTTCTATAGAAATAGTGGATTTATGCAATAGTGATGATGACGAAGTGGAAAATGTAGGTTCCGAACCTGCAAAGAAACTAATTGAAATCAAGAAGGAAACATGCCAAGTAACGGAGAATATAATACAAGTAGCGTCTGAAGGAAATAGAAGCTCTAGTGCTCTAAGCACTTGTCATAGCTATTCCACTCGTCAAATGGAAGAAATGGTAGCGCCGTTGTATGTTGACGTTGATGACACAACTGGTCTTTCTCTGCCACCATTTTGTAGAAACTTCTGGAGAGCTGGATACCATCATGATAATAATGGCCTTTCTTCTAAACTCAACTTCCCAAATACTGGAAACTACTTGCATGTTCACCCTTTCTTCCTTCACTCAAATGCAACTTCACATAAGTGGGTATTTGGTGCTATTGCTGAGCTTATCGATAATGCAGTTGATGAGATCCAAAATGGGGCTACTTTTGTCTTTGTAGATAAAATTTTAAATCCAAAAGATGGAAGTCCAGCGTTGTTGATTAGAGACGATGGTGGTGGAATGGATCCAGAAGCAATGCGTCAATGCATGAGTTTTGGATTTTCAAACAAGTCAAAAATTGCAATTGGACAGTATGGAAATGGCTTCAAGACTGGTAGTATGAGACTGGGTGCAGATGTCATTGTCTTCAGCCGCCACCAGAATAATATGAAATTGACTCAAAGCATTGGACTTCTGTCTTATACATACTTGATGCAAACACAGCAAGACAGAGTTGTAGTCCCCATGGTGAATTATAAGTTTGATACATCAACTGGATACTTGGAAAGACTAAATGACGGAGAGCATTTTAGGTCGAATTTGTCCATACTGTTGCACTGGTCTCCATATCTATCAGAAGAAGAACTTCTGAAACTATTTGATGACATTGGAAATCATGGTACTAAAATTATTATCTTCAATTTATGGTTCAATGATGATGGCAATTTGGAGCTAGACTTTAATTCTGATCCCGAGGATATTCATATTGTCGGGGATATCAAGAAGATTGACACACATTCTGCCTCAAAGATAGTAAATGAGGGACACATTGCTAACCGTTTTCATTATTCTTTACATGCTTACTTGTCCATATTGTACTTGCGGATACCAGAAAGTTTTAGAATGATATTGCGAGGGCAAGTTGTGAAGCTACATAACATTGCAGATGATCTCAAATATACTGAATTTGTCTTGTATAGACCACAGTGTGGTAGTTCTAAAGAGGGAGTATCTGTAACAACAATTGGATTTGTTAAGGAAGCTCCTAAAGGGAACATCCATGGCTTCAATGTATATCACAAAAATCGGCTGATACTGCCATTTTGGAAGGTTGTAAACTATACAAATACTAGGGGTAGAGGAGTTGTTGATTATCTTGAGCCAACTCATAATAAGCAGGATTTTGAGAGAACTTCCCTGTTTCAAAAACTTGAACTACGCCTGAAGCAAATGACATGGGAGTACTGGGATTATCACTGTCATCTGATTGGGTATTGTAAAAGAAGCACTGGAGATCCAGGTGCTCCTCTTAATAAAAGGAAGACACATGGATCTATAGACCTTCATAAGATGAAAAGGCAAGCAATGCAAGAAAATGTTACAGTTGCTGGATGTGATCAGAATGTACTGACAACTGCATCTCCTACAGACCAGACGGTAGACCAAAGAATTATAAACTTGATGGAAGTGCAGAAAAAACTCTTGAAAGAATGTTTGAAATATGAAAAGGCAGAGGAAGAACTTAATCTTAAGGTTACACAGCTTAGAAGAAAAACTCAGGAAGCTAAGCATGAGTATGATACACTTATGGCCGAAGTAAAGTCCCTTGGATTATATTTATGGGAAGAAAATGGTAGTGTAGCTGTACCTCTTGTTTTTTAG
Predicted protein sequences of Glyma17g09551
>Glyma17g09551.1   sequence type=predicted peptide   gene model=Glyma17g09551   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTCSRRFRNGRYKTTAQKGGEWTLHMEICGEAIQGTKMSSIEIVDLCNSDDDEVENVGSEPAKKLIEIKKETCQVTENIIQVASEGNRSSSALSTCHSYSTRQMEEMVAPLYVDVDDTTGLSLPPFCRNFWRAGYHHDNNGLSSKLNFPNTGNYLHVHPFFLHSNATSHKWVFGAIAELIDNAVDEIQNGATFVFVDKILNPKDGSPALLIRDDGGGMDPEAMRQCMSFGFSNKSKIAIGQYGNGFKTGSMRLGADVIVFSRHQNNMKLTQSIGLLSYTYLMQTQQDRVVVPMVNYKFDTSTGYLERLNDGEHFRSNLSILLHWSPYLSEEELLKLFDDIGNHGTKIIIFNLWFNDDGNLELDFNSDPEDIHIVGDIKKIDTHSASKIVNEGHIANRFHYSLHAYLSILYLRIPESFRMILRGQVVKLHNIADDLKYTEFVLYRPQCGSSKEGVSVTTIGFVKEAPKGNIHGFNVYHKNRLILPFWKVVNYTNTRGRGVVGILQADYLEPTHNKQDFERTSLFQKLELRLKQMTWEYWDYHCHLIGYCKRSTGDPGAPLNKRKTHGSIDLHKMKRQAMQENVTVAGCDQNVLTTASPTDQTVDQRIINLMEVQKKLLKECLKYEKAEEELNLKVTQLRRKTQEAKHEYDTLMAEVKSLGLYLWEENGSVAVPLVF*

>Glyma17g09551.2   sequence type=predicted peptide   gene model=Glyma17g09551   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTCSRRFRNGRYKTTAQKGGEWTLHMEICGEAIQGTKMSSIEIVDLCNSDDDEVENVGSEPAKKLIEIKKETCQVTENIIQVASEGNRSSSALSTCHSYSTRQMEEMVAPLYVDVDDTTGLSLPPFCRNFWRAGYHHDNNGLSSKLNFPNTGNYLHVHPFFLHSNATSHKWVFGAIAELIDNAVDEIQNGATFVFVDKILNPKDGSPALLIRDDGGGMDPEAMRQCMSFGFSNKSKIAIGQYGNGFKTGSMRLGADVIVFSRHQNNMKLTQSIGLLSYTYLMQTQQDRVVVPMVNYKFDTSTGYLERLNDGEHFRSNLSILLHWSPYLSEEELLKLFDDIGNHGTKIIIFNLWFNDDGNLELDFNSDPEDIHIVGDIKKIDTHSASKIVNEGHIANRFHYSLHAYLSILYLRIPESFRMILRGQVVKLHNIADDLKYTEFVLYRPQCGSSKEGVSVTTIGFVKEAPKGNIHGFNVYHKNRLILPFWKVVNYTNTRGRGVVDYLEPTHNKQDFERTSLFQKLELRLKQMTWEYWDYHCHLIGYCKRSTGDPGAPLNKRKTHGSIDLHKMKRQAMQENVTVAGCDQNVLTTASPTDQTVDQRIINLMEVQKKLLKECLKYEKAEEELNLKVTQLRRKTQEAKHEYDTLMAEVKSLGLYLWEENGSVAVPLVF*






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