Glyma17g09460 - SoyBase

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Report for Sequence Feature Glyma17g09460

Feature Type:	gene_model
Chromosome:	Gm17
Start:	7022958
stop:	7025187
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g09460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G10790	AT	Annotation by Michelle Graham. TAIR10: UBX domain-containing protein \| chr4:6640752-6643035 REVERSE LENGTH=480	SoyBase	E_val: 4.00E-69	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
KOG2689	KOG	Predicted ubiquitin regulatory protein	JGI		ISS
PTHR23322	Panther	FAS-ASSOCIATED PROTEIN	JGI		ISS
PTHR23322:SF15	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00789	PFAM	UBX domain	JGI		ISS
UniRef100_B9RAY4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UBX domain-containing protein 8-B, putative n=1 Tax=Ricinus communis RepID=B9RAY4_RICCO	SoyBase	E_val: 3.00E-124	ISS
UniRef100_I1MTE9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MTE9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g09460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g09460

Paralog	Evidence	Comments
Glyma05g02450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g09460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g087200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g09460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g09460

Limit To All Plant Sequences

>Glyma17g09460.3   sequence type=transcript   gene model=Glyma17g09460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAAACAAGTGTGGCATCTAAACATTCTTGGACAATCCTCCCGTGTCTTTTCCACAGAACAAGATTTCAAAGAAAGACAATATTGCATGAACACCCGAAATTAAAGCATGCAGTTGCTGCAAGAATAATTTGGAGGGACTAGTGTGGAAAGTTGAAACAGAAAGAAATGCCATCAACAGTGAGGGATCACGGGATTGTTCGGAGGATGGCAAGTCTCCCTCGAAGCATAATGGAGTTTATAGGAAGAGGAAGAAGAAGAAATCAGCACACAAATTTTCCTGCAGCCTCAAGACCACCATCATGATCCACAACCACATGGTCAAGTAGTAGTTCAAGATGAATGGAGTTTTCTAGAGAGTTTTGAGCAGCAATTTGGCACCAAACATCCTTTCTTCTATGCTTGCCGGTTCATGGAAGCTATTAAGTTAGCTGAGCATGATCACAAGTTCTTGTTCATGTACCTCCACTCGCCTGACCACCCTTTTGCAAACGTTTTCTGCAAGGAAACGCTGTGTTCAGAGCCGGTGATCCAGTTTCTTGATGTGAATTTTGTTTGCTGGGGTGGACTTGTGGATAGAGGAGAGGGTGTGCAAATGGTAGCAACACTAAGTCCTGCTACTTTTCCTTGTTGTGCTGTCATAGCCCCCACTCCTGGTGAGAGCATAGCAGTGCTGCAACAGCTAGAGGGACCCCTTTCGCCAGCTGAGCTAGCAGGGATTCTACAAAGAACATTGGAAGAACAAGGGGTGGCTTTTGGAAGTGATAGGGCTAAGCAGGAAGAAAAGATCCGAGCAGACCGTAGGCTTAGAGAAGAGCAAGATGCTGCATATCTTGCAGCTTTGCAAATTGACAAGGAAAAAGACAAACCGAATAGTTTACCTCCAAGAGAGAGACTTCAGAAGCCGGGTGAAGCTCACAACAACAGAAATTATGGGAAATTGTTGAACAATTCTATCAATGTCACTAAACAGAACAGCAAAGTGAATGAGTCCAATAAAGAAAAACGAGACAAGGGAGTTGCAAGTAAAGGAAGCGAGTCTCAGCCCACACAGATACTCATAAGGTTTCCAAACGGGGAAAGAAGAGAGCATACTTTCCTTTACACAGACAGAATCCAGTCCATTTTCTCATACATTGATTCATTAGGTTTGCCATGGATTGGAAACTACAGATTGATATCAAATTTTCCAAGAAGAGCTTATGGAGTTGATCAAATGAGAATGACTCTCAAAGAGGCTGGCCTGTATCCTAAAGCTAGTGTGTTCCTGGAGCCTTTAGGAACTAGAGTCCCATAACCCCCATGTTAAAGAACAACATAAATTTGAATTTCATTAATCAAAATGAGAGCAACAAAAATTATTGCGTGGACTTCACTTGAGCTCTTAAATTGATTAAGATTTGAGTGCATCTCCAAAATTTCTGGACTTCTTGTTAAATGATAATTTCTAACCCTTTTAACTGTTGTTCTTGTTTATAGTAAAAGCATAATTGCTCTGCCGATTCCAAATTCTGAGTGCATGGATGCCTTATTCTTTCTTTATTGCTTTCCTTCATCTTGCAAAACCAAGTGCATAAATAAATA

Coding sequences of Glyma17g09460

Limit To All Plant Sequences

>Glyma17g09460.2   sequence type=CDS   gene model=Glyma17g09460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCTATTAAGTTAGCTGAGCATGATCACAAGTTCTTGTTCATGTACCTCCACTCGCCTGACCACCCTTTTGCAAACGTTTTCTGCAAGGAAACGCTGTGTTCAGAGCCGGTGATCCAGTTTCTTGATGTGAATTTTGTTTGCTGGGGTGGACTTGTGGATAGAGGAGAGGGTGTGCAAATGGTAGCAACACTAAGTCCTGCTACTTTTCCTTGTTGTGCTGTCATAGCCCCCACTCCTGGTGAGAGCATAGCAGTGCTGCAACAGCTAGAGGGACCCCTTTCGCCAGCTGAGCTAGCAGGGATTCTACAAAGAACATTGGAAGAACAAGGGGTGGCTTTTGGAAGTGATAGGGCTAAGCAGGAAGAAAAGATCCGAGCAGACCGTAGGCTTAGAGAAGAGCAAGATGCTGCATATCTTGCAGCTTTGCAAATTGACAAGGAAAAAGACAAACCGAATAGTTTACCTCCAAGAGAGAGACTTCAGAAGCCGGGTGAAGCTCACAACAACAGAAATTATGGGAAATTGTTGAACAATTCTATCAATGTCACTAAACAGAACAGCAAAGTGAATGAGTCCAATAAAGAAAAACGAGACAAGGGAGTTGCAAGTAAAGGAAGCGAGTCTCAGCCCACACAGATACTCATAAGGTTTCCAAACGGGGAAAGAAGAGAGCATACTTTCCTTTACACAGACAGAATCCAGTCCATTTTCTCATACATTGATTCATTAGGTTTGCCATGGATTGGAAACTACAGATTGATATCAAATTTTCCAAGAAGAGCTTATGGAGTTGATCAAATGAGAATGACTCTCAAAGAGGCTGGCCTGTATCCTAAAGCTAGTGTGTTCCTGGAGCCTTTAGGAACTAGAGTCCCATAA

>Glyma17g09460.3   sequence type=CDS   gene model=Glyma17g09460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCTATTAAGTTAGCTGAGCATGATCACAAGTTCTTGTTCATGTACCTCCACTCGCCTGACCACCCTTTTGCAAACGTTTTCTGCAAGGAAACGCTGTGTTCAGAGCCGGTGATCCAGTTTCTTGATGTGAATTTTGTTTGCTGGGGTGGACTTGTGGATAGAGGAGAGGGTGTGCAAATGGTAGCAACACTAAGTCCTGCTACTTTTCCTTGTTGTGCTGTCATAGCCCCCACTCCTGGTGAGAGCATAGCAGTGCTGCAACAGCTAGAGGGACCCCTTTCGCCAGCTGAGCTAGCAGGGATTCTACAAAGAACATTGGAAGAACAAGGGGTGGCTTTTGGAAGTGATAGGGCTAAGCAGGAAGAAAAGATCCGAGCAGACCGTAGGCTTAGAGAAGAGCAAGATGCTGCATATCTTGCAGCTTTGCAAATTGACAAGGAAAAAGACAAACCGAATAGTTTACCTCCAAGAGAGAGACTTCAGAAGCCGGGTGAAGCTCACAACAACAGAAATTATGGGAAATTGTTGAACAATTCTATCAATGTCACTAAACAGAACAGCAAAGTGAATGAGTCCAATAAAGAAAAACGAGACAAGGGAGTTGCAAGTAAAGGAAGCGAGTCTCAGCCCACACAGATACTCATAAGGTTTCCAAACGGGGAAAGAAGAGAGCATACTTTCCTTTACACAGACAGAATCCAGTCCATTTTCTCATACATTGATTCATTAGGTTTGCCATGGATTGGAAACTACAGATTGATATCAAATTTTCCAAGAAGAGCTTATGGAGTTGATCAAATGAGAATGACTCTCAAAGAGGCTGGCCTGTATCCTAAAGCTAGTGTGTTCCTGGAGCCTTTAGGAACTAGAGTCCCATAA

Predicted protein sequences of Glyma17g09460

Limit To All Plant Sequences

>Glyma17g09460.2   sequence type=predicted peptide   gene model=Glyma17g09460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAIKLAEHDHKFLFMYLHSPDHPFANVFCKETLCSEPVIQFLDVNFVCWGGLVDRGEGVQMVATLSPATFPCCAVIAPTPGESIAVLQQLEGPLSPAELAGILQRTLEEQGVAFGSDRAKQEEKIRADRRLREEQDAAYLAALQIDKEKDKPNSLPPRERLQKPGEAHNNRNYGKLLNNSINVTKQNSKVNESNKEKRDKGVASKGSESQPTQILIRFPNGERREHTFLYTDRIQSIFSYIDSLGLPWIGNYRLISNFPRRAYGVDQMRMTLKEAGLYPKASVFLEPLGTRVP*

>Glyma17g09460.3   sequence type=predicted peptide   gene model=Glyma17g09460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAIKLAEHDHKFLFMYLHSPDHPFANVFCKETLCSEPVIQFLDVNFVCWGGLVDRGEGVQMVATLSPATFPCCAVIAPTPGESIAVLQQLEGPLSPAELAGILQRTLEEQGVAFGSDRAKQEEKIRADRRLREEQDAAYLAALQIDKEKDKPNSLPPRERLQKPGEAHNNRNYGKLLNNSINVTKQNSKVNESNKEKRDKGVASKGSESQPTQILIRFPNGERREHTFLYTDRIQSIFSYIDSLGLPWIGNYRLISNFPRRAYGVDQMRMTLKEAGLYPKASVFLEPLGTRVP*

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