Glyma17g09450 - SoyBase

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Report for Sequence Feature Glyma17g09450

Feature Type:	gene_model
Chromosome:	Gm17
Start:	7009726
stop:	7013841
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g09450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G50150	AT	Annotation by Michelle Graham. TAIR10: Protein of Unknown Function (DUF239) \| chr5:20402444-20406375 REVERSE LENGTH=420	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03080	PFAM	Arabidopsis proteins of unknown function	JGI		ISS
UniRef100_G7J4W2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Carboxyl-terminal proteinase n=1 Tax=Medicago truncatula RepID=G7J4W2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MTE8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTE8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g09450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g09450

Paralog	Evidence	Comments
Glyma05g02460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g09450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g087100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g09450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g09450

Limit To All Plant Sequences

>Glyma17g09450.1   sequence type=CDS   gene model=Glyma17g09450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACATGAAGGGATATTCAGTTTCCTGGACAAAACAACATCAGAAAGAGCTATTTTTTGCAGCTCATCACACAACAAGACAACACCAATGCATACAAGCAAATCATGATGCCACAGAAGAAACAAGCTCACAGCAACAAAATCAATATTCCCTGAAATTGGCTCTTTCTTCCACTTCCCAAAATACTATGCTACATGCTTTTGTTGCTTTGCTGCTACTTGTTACTTCAATTGGCACAGCATTCTCTCACCCCACCATTGCCTCCAATTCTTCTTCAACTTTGCCAGCAGCACTCTCTCACTTCCATGCTAATAACAACACATTGAGACCTTCTGCAGTGTTGCAAAAGTTGAGGAGAATCAGAGCTCATCTCAACAAGAGCAACAAGCCTGCTGTTAAAACAATTAAGAGTCCAGATGGGGATTTGATTGATTGTGTTTTGTCTCATCAGCAACCTGCTTTTGACCATCCTCAACTCAAAGGGCAAAGACCATTGGATCCACCAGAAAGGCCAAAGGGTCACACTCACACCAATGGAGAAACAGTCATAGAGAGCTTTCAGCTTTGGACTGATTCTGGTGAAGCATGCCCAGAAGGAACTGTTCCAATCAGAAGAACAACTGAACAAGATTTTCTACGAGCAAGCTCCGTTAGAAGATTTGGAAGAAAACCAAGAAATGTACGGAGGGACTCCACAGGCACTGGTCATGAGCATGCAGTTGTTTCTGTAAATGGAGATCAATACTATGGAGCAAAAGCAAGCATAAACGTGTGGACGCCTAGCGTAACCGATCCATACGAATTCAGTTTGTCACAGATATGGGTTATTGCTGGATCGTTTGGTAATGATCTGAATACCATAGAAGCTGGATGGCAGGTAAGTCCTGAGCTATATGGAGACAACTATCCTAGGTTCTTCACTTATTGGACAACGGATGCATATCAAGCAACAGGATGCTACAACTTACTATGTTCAGGATTTGTCCAAACCAACAACAGGATAGCAATAGGGGCTGCAATCTCACCAAGATCCATCTACAATGGCAGACAATTTGATATTGGATTAATGGTTTGGAAGGACCCAAAGCATGGACATTGGTGGCTGGAGTTTGGGTCGGGGCTTCTAGTTGGGTACTGGCCAGCATACTTGTTTAGTCACTTGAGAAACCATGCAAGCATGGTGCAATTTGGAGGGGAAATTGTGAATTCTCGTTCAAGGGGCTACCACACTGGCACTCAAATGGGTAGTGGCCATTTTTCAGGAGAAGGGTTTAGAAAAGCAGCATATTTTAGAAACTTACAAGTTGTTGATTGGGACAATAACTTGCTTCCTCTATCAAATATTCACCAGTTGGCTGACCATTCCAATTGCTATGACATAAGGATGGGATCAAACAGTGTTTGGGGAACTTACTTTTATTATGGAGGTCCTGGAAGGAATGTGAGATGCCCATGA

Predicted protein sequences of Glyma17g09450

Limit To All Plant Sequences

>Glyma17g09450.1   sequence type=predicted peptide   gene model=Glyma17g09450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDMKGYSVSWTKQHQKELFFAAHHTTRQHQCIQANHDATEETSSQQQNQYSLKLALSSTSQNTMLHAFVALLLLVTSIGTAFSHPTIASNSSSTLPAALSHFHANNNTLRPSAVLQKLRRIRAHLNKSNKPAVKTIKSPDGDLIDCVLSHQQPAFDHPQLKGQRPLDPPERPKGHTHTNGETVIESFQLWTDSGEACPEGTVPIRRTTEQDFLRASSVRRFGRKPRNVRRDSTGTGHEHAVVSVNGDQYYGAKASINVWTPSVTDPYEFSLSQIWVIAGSFGNDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNRIAIGAAISPRSIYNGRQFDIGLMVWKDPKHGHWWLEFGSGLLVGYWPAYLFSHLRNHASMVQFGGEIVNSRSRGYHTGTQMGSGHFSGEGFRKAAYFRNLQVVDWDNNLLPLSNIHQLADHSNCYDIRMGSNSVWGTYFYYGGPGRNVRCP*

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