SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G50130 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr5:20390066-20393053 FORWARD LENGTH=339 | SoyBase | E_val: 1.00E-174 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG1208 | KOG | Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) | JGI | ISS | |
| PTHR24322 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24322:SF98 | Panther | JGI | ISS | ||
| PF00106 | PFAM | short chain dehydrogenase | JGI | ISS | |
| UniRef100_G7J4W0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Retinol dehydrogenase n=1 Tax=Medicago truncatula RepID=G7J4W0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E69D | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E69D related cluster n=1 Tax=unknown RepID=UPI000233E69D | SoyBase | E_val: 0 | ISS |
|
Glyma17g09420 not represented in the dataset |
Glyma17g09420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g02490 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g086800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g09420.1 sequence type=CDS gene model=Glyma17g09420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGCAACACTACGGTACTTAGCAGGACTTGCTGGGCCAAGTGGTTTCGGCTCAAATTCAACAGCTGAGCAAGTCACTCAAGATTGCTCTTCCTTGCTCCCTTCAAATCTAACCGCTCTCATCACTGGTGGGACTTCTGGTATTGGAGCTGAAACAGCTAGAGTGTTAGCAAAGAGAGGAGTAAGGATTGTGATTGGTGCCAGGGACTTGAGAAAGGCCAAGGAAGTGAGAGAGAAAATCCAAAAGGAAAGTCCCCATGCTGAGGTTATTCTGTTGGAGATTGATCTTAGCTCTTTTGCTTCTGTACAGAGATTTTGTTCAGAGTTTTTAGCTTTAGACCTGCCCCTTAATATTCTCATAAACAATGCAGGAATGTACTCTCAAAACTTGGAGTTCTCCGAAGAGAAAATTGAAATGACATTCGCTACAAATTACTTAGGACACTTTTTGGTAACGAAGATGCTACTAGAGAAAATGATAGATACTGCAAAGAAGACAGGCATTCAAGGAAGAATAATAAACGTTTCTTCTGTGATTCATAGCTGGGTGAAAAGATCTTGTTTTTCTTTCAACGACATGCTCTGTGGAAAAAATTATAATGGCACACGCGCATATGCTAAGTCAAAATTGGCCACAATTCTGCATGTGAAGGAAGTAGCCAGACAGCTGAAGGAAAGGAATGCAAATGTAACTATTAATGCAGTGCATCCAGGCATTGTGAAGACGGGAATTATTAGAGCACATAAGGGCTTAATAACGGATTCCCTATTTTTCATTGCATCGAAGTTGCTGAAATCGATATCACAGGGTGCATCAACGACGTGTTATGTTGCTCTAAGCGAACAAACAGATGGAGTGAGTGGGAAATATTTTACAGATTGTAACGAGAGTAACTGCTCCAGTCTAGCAAATGACGAATCAGAAGCTAGAAAGCTATGGAATGACACCCATGCCTTGCTTCACAAACGGCTACGTCAAGCAACAAATTCAAAGTGTTTCTTCCCCACCTAG
>Glyma17g09420.1 sequence type=predicted peptide gene model=Glyma17g09420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKATLRYLAGLAGPSGFGSNSTAEQVTQDCSSLLPSNLTALITGGTSGIGAETARVLAKRGVRIVIGARDLRKAKEVREKIQKESPHAEVILLEIDLSSFASVQRFCSEFLALDLPLNILINNAGMYSQNLEFSEEKIEMTFATNYLGHFLVTKMLLEKMIDTAKKTGIQGRIINVSSVIHSWVKRSCFSFNDMLCGKNYNGTRAYAKSKLATILHVKEVARQLKERNANVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKSISQGASTTCYVALSEQTDGVSGKYFTDCNESNCSSLANDESEARKLWNDTHALLHKRLRQATNSKCFFPT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
