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Report for Sequence Feature Glyma17g09401

Feature Type:gene_model
Chromosome:Gm17
Start:6937458
stop:6944430
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g09401
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G24670AT Annotation by Michelle Graham. TAIR10: tryptophan aminotransferase related 2 | chr4:12727940-12730694 REVERSE LENGTH=440 SoyBaseE_val: 2.00E-172ISS
GO:0009684GO-bp Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0009958GO-bp Annotation by Michelle Graham. GO Biological Process: positive gravitropism SoyBaseN/AISS
GO:0010078GO-bp Annotation by Michelle Graham. GO Biological Process: maintenance of root meristem identity SoyBaseN/AISS
GO:0010087GO-bp Annotation by Michelle Graham. GO Biological Process: phloem or xylem histogenesis SoyBaseN/AISS
GO:0010588GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon vascular tissue pattern formation SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0048467GO-bp Annotation by Michelle Graham. GO Biological Process: gynoecium development SoyBaseN/AISS
GO:0048825GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon development SoyBaseN/AISS
GO:0080022GO-bp Annotation by Michelle Graham. GO Biological Process: primary root development SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0016846GO-mf Annotation by Michelle Graham. GO Molecular Function: carbon-sulfur lyase activity SoyBaseN/AISS
GO:0030170GO-mf Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding SoyBaseN/AISS
GO:0050362GO-mf Annotation by Michelle Graham. GO Molecular Function: L-tryptophan:2-oxoglutarate aminotransferase activity SoyBaseN/AISS
GO:0080097GO-mf Annotation by Michelle Graham. GO Molecular Function: L-tryptophan:pyruvate aminotransferase activity SoyBaseN/AISS
KOG0257 KOG Kynurenine aminotransferase, glutamine transaminase K JGI ISS
PTHR11751Panther SUBGROUP I AMINOTRANSFERASE RELATED JGI ISS
PTHR11751:SF162Panther SUBFAMILY NOT NAMED JGI ISS
PF04864PFAM Allinase JGI ISS
UniRef100_G7J4U4UniRef Annotation by Michelle Graham. Best UniRef hit: Alliin lyase n=1 Tax=Medicago truncatula RepID=G7J4U4_MEDTR SoyBaseE_val: 0ISS
UniRef100_G7J4U4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Alliin lyase n=1 Tax=Medicago truncatula RepID=G7J4U4_MEDTR SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g09401
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g09401 not represented in the dataset
Glyma17g09401 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g09401
ParalogEvidenceComments
Glyma05g02521 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g09401 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g086500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g09401
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g09401
>Glyma17g09401.1   sequence type=CDS   gene model=Glyma17g09401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAGCTTGCAGTTCCACCTTTGCTTTCTCTAAGGCACTTGCTGGTGCTATCACTTGCTTTGAATGTGAGTTTGATTCTGAGGACTGTGTATTATGAGAGTGAAAAAGGAAGCAAAGGGTTTTGTTTGAACAAAAACATGATGGCGGATGCAGATTCTGATGATAGAGAGGGGCATCTTATCCACAAATCACGTTTGGCTATGTCCTCTACTTCGTCTCTCGTTAATTCTACTCGTGCAGATCATCCAGGAGGAAGGGAAACAGTGATCAACTTGGATCATGGAGACCCAACCATATATGAAAGATTTTGGAGACAAGTGGGTGACAAGACCACAATCATAATTCCAGGATGGCAATCCTTGAGTTATTTTTCTGATGGCTCAAACATTTGCTGGTTTTTAGAGACCGAGTTTGCAAGGGAAGTAGTGAGGTTACATAAAGTGGTGGGGAATGCTGTGACAGAAGGTCGCCATATTGTTGTTGGGACAGGTTCCTCTCAGCTAATTCTGGCTGCCCTTTATGCCCTGTCCTCGCCTGATGCTGCTGAACCAATCAGTGTGGTATCTGCCGCACCCTATTATTCGTCCTACCCATCAATGGCAGATTATCAGAAATCAGGCCTTTACAAATGGGCTGGTGATGCAGAGAATTTTGACAAAGAGGGTCCTTATATTGAGCTTGTTACTTCTCCCAATAACCCTGATGGACATAGAAGGGAAGCTATGGTCAACCGAAGCCAAGGACTATTGATTCATGACCTTGCCTATTATTGGCCTCAATACACTCCAATATCATCCCCTTCAGATCATGATCTCACTCTTTTCACTGTCTCAAAATCCACTGGTCATGCAGGAATGCGCATAGGGTGGGCTCTTGTCAAAGATAAAGGGGTAGCAAAGAAAATGACTAAATTCATAGAGATAAGTACAATCGGTGTCTCGAAGGATTCTCAACTCAGAGCTGCCAAAGTTTTAAAGGCAGTGTCTGACAGCTGCGAACATGAAAACTCCCAATATGAGGAATCATTTTTCATGTACAGCTACAACATAATGTCACAAAGATGGAAGCAACTGAGAGCAGTAGTTGAGGCCGGTGATTTGTTCACTTTGCCACAATTTTCTCCTGCATTCTGCACCTTCTTTGGTCAGGAGACGGAGCCTCAACCAGCTTTCATATGGCTGAAGTGTGAGGGAGATATAGAGGACTGCGAAAGCTTGCTTCGAGAACACAAAATTATATCAAGAAGTGGGAAACACTTTGGGGCTAGCCCAAAATACGTAAGAATTAGCATGCTGGATACTGATGAAACTTTTATACAGTTAATAGATAGACTATCAGCCATACAACAAGGAGAATAA
Predicted protein sequences of Glyma17g09401
>Glyma17g09401.1   sequence type=predicted peptide   gene model=Glyma17g09401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKLAVPPLLSLRHLLVLSLALNVSLILRTVYYESEKGSKGFCLNKNMMADADSDDREGHLIHKSRLAMSSTSSLVNSTRADHPGGRETVINLDHGDPTIYERFWRQVGDKTTIIIPGWQSLSYFSDGSNICWFLETEFAREVVRLHKVVGNAVTEGRHIVVGTGSSQLILAALYALSSPDAAEPISVVSAAPYYSSYPSMADYQKSGLYKWAGDAENFDKEGPYIELVTSPNNPDGHRREAMVNRSQGLLIHDLAYYWPQYTPISSPSDHDLTLFTVSKSTGHAGMRIGWALVKDKGVAKKMTKFIEISTIGVSKDSQLRAAKVLKAVSDSCEHENSQYEESFFMYSYNIMSQRWKQLRAVVEAGDLFTLPQFSPAFCTFFGQETEPQPAFIWLKCEGDIEDCESLLREHKIISRSGKHFGASPKYVRISMLDTDETFIQLIDRLSAIQQGE*






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