SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g09320

Feature Type:gene_model
Chromosome:Gm17
Start:6889969
stop:6894069
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g09320
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G63110AT Annotation by Michelle Graham. TAIR10: histone deacetylase 6 | chr5:25315834-25318227 REVERSE LENGTH=471 SoyBaseE_val: 0ISS
GO:0000085GO-bp Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0010431GO-bp Annotation by Michelle Graham. GO Biological Process: seed maturation SoyBaseN/AISS
GO:0016441GO-bp Annotation by Michelle Graham. GO Biological Process: posttranscriptional gene silencing SoyBaseN/AISS
GO:0016458GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing SoyBaseN/AISS
GO:0016575GO-bp Annotation by Michelle Graham. GO Biological Process: histone deacetylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0004407GO-mf Annotation by Michelle Graham. GO Molecular Function: histone deacetylase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG1342 KOG Histone deacetylase complex, catalytic component RPD3 JGI ISS
PTHR10625Panther HISTONE DEACETYLASE JGI ISS
PTHR10625:SF28Panther HISTONE DEACETYLASE 1, 2 ,3 JGI ISS
PF00850PFAM Histone deacetylase domain JGI ISS
UniRef100_I1MTD8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Histone deacetylase n=1 Tax=Glycine max RepID=I1MTD8_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1MTD8UniRef Annotation by Michelle Graham. Best UniRef hit: Histone deacetylase n=1 Tax=Glycine max RepID=I1MTD8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g09320
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g09320
ParalogEvidenceComments
Glyma05g02540 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g09320 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g085700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g09320
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g09320
>Glyma17g09320.1   sequence type=CDS   gene model=Glyma17g09320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAATGGAAGAGGAGAGTAGCATCATAGAAGGTGGTGCTTCGCTTCCATCGTCGGGTTCAGACGCCAAGAAGCGAAGAGTGACCTACTTCTACGAGCCCACCATCGGCGATTACTACTACGGTCAGGGGCACCCAATGAAGCCGCACCGAATCCGCATGGCGCACAACCTCATCGTCCACTACTCCCTCCACCGCCGCATGGAGATCAACCGCCCCTTCCCGGCCTCCCCCGCCGACATCCGCCGCTTCCACTCCGACGACTACGTCGACTTCCTCTCCTCCGTCTCCCCCGAGACCCTCGCCGATTCCGCCTTCTCTCGTCACCTCAAGCGCTTCAACGTCGGCGAGGACTGCCCCGTCTTCGACGGCCTCTTCCCCTTCTGCCAGGCCTCCGCCGGTGGCTCCCTTGGCGCCGCCGTCAAACTCAACCGCGCTGACGCCGACATCGCCATCAATTGGGCCGGCGGCCTCCATCATGCCAAGAAGTCTGAGGCCTCTGGATTCTGCTACGTCAACGACATTGTCCTCGGCATCCTCGAACTTCTCAAGGCTCACAGGCGTGTGCTGTATGTTGACATTGATGTTCACCATGGTGATGGTGTTGAGGAGGCCTTTTACACCACTGATAGAGTGATGACAGTGTCTTTCCACAAGTTTGGGGACTTTTTCCCTGGCACAGGGCACGTCAAAGACATTGGGGTGGGCTCAGGAAAGAATTATGCAGTAAATGTCCCATTAAATGATGGAATGGATGATGAGAGTTTCCGTAGTCTGTTTCGATCCATCATTCAAAAAGTCATGGAGGTTTATCAACCTGAGGCAGTTGTTCTACAATGTGGAGCTGATTCATTGTCTGGTGACAGATTGGGTTGCTTCAACTTGTCTGTGAGAGGTCATGCAGATTGCCTTCGTTTTCTTAGATCGTTCAATGTTCCTTTAATGGTCTTGGGTGGGGGTGGATATACAATTCGGAATGTTGCCCGTTGTTGGTGTTATGAGACAGCAGTGGCAGTAGGAGTGGAGCCTGATAATAAGTTGCCTTATAATGAATATTATGAATATTTTGGCCCAGATTATACTCTCTATGTCGATCCAAGCAACATGGAGAACCTAAACACATCCAAGGATTTGGAAAAATTAAGGAACACACTACTAGAACAGATTTCCCGACTTCCACATGCTCCCAGTGTACCTTTTCAGACAACACCACCTACCTTGCAACTTCCGGAAGAGGCGGAAGAGAACATGGATAGAAGACCAAAACTTCGCAAATGGGATGGTGAAGATTATGATTCTGATCCCGAAGAAGGTGGAAAGGATAATTCCAAGTTCTCAAACATCACTGCCCATATGAGGGACATTGCAGATGAAATGGAAGAAGAGAAGCCAGAAGAGCATCCATCATCTTGTAGTTGA
Predicted protein sequences of Glyma17g09320
>Glyma17g09320.1   sequence type=predicted peptide   gene model=Glyma17g09320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGMEEESSIIEGGASLPSSGSDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRRMEINRPFPASPADIRRFHSDDYVDFLSSVSPETLADSAFSRHLKRFNVGEDCPVFDGLFPFCQASAGGSLGAAVKLNRADADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKAHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHVKDIGVGSGKNYAVNVPLNDGMDDESFRSLFRSIIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVRGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLYVDPSNMENLNTSKDLEKLRNTLLEQISRLPHAPSVPFQTTPPTLQLPEEAEENMDRRPKLRKWDGEDYDSDPEEGGKDNSKFSNITAHMRDIADEMEEEKPEEHPSSCS*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo