SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G42490 | AT | Annotation by Michelle Graham. TAIR10: Copper amine oxidase family protein | chr2:17691600-17695526 REVERSE LENGTH=776 | SoyBase | E_val: 0 | ISS |
| GO:0009308 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amine metabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005777 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisome | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| GO:0008131 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: primary amine oxidase activity | SoyBase | N/A | ISS |
| GO:0048038 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: quinone binding | SoyBase | N/A | ISS |
| KOG1186 | KOG | Copper amine oxidase | JGI | ISS | |
| PTHR10638 | Panther | COPPER/TOPAQUINONE OXIDASE | JGI | ISS | |
| PTHR10638:SF12 | Panther | COPPER AMINE OXIDASE | JGI | ISS | |
| PF01179 | PFAM | Copper amine oxidase, enzyme domain | JGI | ISS | |
| PF02727 | PFAM | Copper amine oxidase, N2 domain | JGI | ISS | |
| PF02728 | PFAM | Copper amine oxidase, N3 domain | JGI | ISS | |
| UniRef100_G7J4S8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Primary amine oxidase n=1 Tax=Medicago truncatula RepID=G7J4S8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E69A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E69A related cluster n=1 Tax=unknown RepID=UPI000233E69A | SoyBase | E_val: 0 | ISS |
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Glyma17g09295 not represented in the dataset |
Glyma17g09295 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g02560 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g085500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g09295.1 sequence type=CDS gene model=Glyma17g09295 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTTAGTTCTGCAAAAGGCGACGCCTCCTCCTTCAGTTCTCGCTGCCTCCACCCATGCCAACAAGCTACCCACGCCTGTCATCTCTGAACCTTCTGCCACTCATGCCCTTCCTCCTAAAGGAATCAGTACAATGTCTAGGACCCAATCAAGCCATCCTTTGGACCCTTTATCTGCAGCCGAAATCTCTGTGGCAGTGGCAACTGTGAGGGCAGCTGGAGCCACTCCTGAGCTCAGAGACAGTATCCGCTTTATTGAAGTAGTTTTGTTGGAACCAGATAAACATGTTGTTGCACTGGCAGATGCTTATTTCTTTTCTCCTTTCCAACCATCATTGCTTCCTAGAACTAAAGGAGGAGCAGTAATTCCAAGTAATCTCCCTCCAAGATGTGCTAGAATTGTTGTTTACAATAAGAAGACAAATGAGACTAGTATATGGATTGTTGAATTATCACAAGTACATGCTGTAACTCGAAGAGGTCATCACCGTGGAAAAGTAATTTCATCACAGGTTGTTCCAGATGCTCAGCCTCCAATGGATGCTATGGAATATGCAGAATGTGAAGCTGTTGTTAAAGATTTCCCTCCATTTAGAGAGGCTATGAAGAAAAGGGGCATTGAAGACATGGATCTTGTAATGGTTGATGCCTGGTGTGTTGGTTATTACAATGAAGCTGACGATCCCAACCGTAGACTTACTAAGCCACTTATATTTTGCCGGGGCGAAAGTGACAGCCCTATGGAAAATGGCTATGCACGCCCGGTTGAGGGAATCTATGTGCTTGTTGATATGCAAAACATGCTGGTGATTGAATTTGAAGACCGTAAATTTGTTCCTCTGCCTCCAGTTGATCCCTTGAGGAGGTATACACATGGTGAAACAAGAGGTGGATTTGATAGAAGTGACATAAAACCCTTGCAAATTATTCAGCTTGAAGGCCCAAGCTTTCGTGTCGATGGATCTTATGTTGCATGGCAAAAGTGGAACTTTCGTATTGGATTCACTCCTAGAGAAGGTTTGGTTATATATTCGGTTGCATATATTGATGGTAGTCAAGGGCGAAGGCCTGTAGCACATAGACTGAGTTTTGTGGAGATGGTTGTGCCATATGGAGATCCAAATGAACCACATTACAGGAAGAATGCCTTTCATGCTGGGGAAAATGGCTTGGGAAAAAATGCACATTCTCTCAAGAAGGGGTGTGATTGTTTGGGCTACATCAAATACTTTGATGCTCATTTCACAAATTTCACTGGTGGAGTTGAGACAATTGAAAATTGTGTATGTTTGCATGAAGAGGATCATGGAATTCTTTGGAAGCATCATGATTGGAGAACTGGCTTAGCAGAAGTCCGAAGATCTAGAAGACTTTCAGTTTCTTTTATGTGTACTGTGGCTAACTATGAGTATGGATTTTTTTGGTACTTTTATCAGGCAATTAAGCTAACCGGAATTCTAAGTTTAGGATCCTTGTTACCTGGAGAGTTTCGTAAATATGGAACCACGATTGCGCCAGGTTTATATGCTCCAGTTCATCAACACTTTTTTGTAGCTCGCATGAACATGACTGTGGATTCTAAACCTGGCGATGCTTTGAATCAGGTCGTGGAGATCAATGTCAAAGTTGAGGAACCAGGGGACAATAATGTTCACAATAATGCATTTTATGCTGAAGAGACTCTGCTCAAATCTGAATTGGAAGCCATGCGTGATTGCAATCCTTTGGCTGCTCGACATTGGATTGTAAGGAACACGAGAATAGGCAATAGAACTGGACAGTTGACAGGCTATAAGTTGGTACCTGGCTCAAACTGCTTACCATTGGCAGGTTCTGAGGCCAAGTTTCTAAGAAGAGCTGCTTTCTTGAGGCATAATCTTTGGGTAACACCCTATTCACACGATCAAATGTTTCCTGGGGGAGAATTTCCTAATCAAAATCCACGTGTCAGCCAAGGACTAGCTACATGGGTTAAGCAAAACCGATCATTGGAAGAAACTGATATAGTTCTTTGGTATGTATTTGGAATCACACAGGTTCCTCGTTTGGAAGACTGGCCAGTTATGCCAGTAGAACGCATCGGTTTTATGCTCATGCCTCATGGATTCTTCAACTGTTCTCCTGCAGTGGATCCTAACCCTAACCCTGCCCCGGAAGAAGAAAAGAGTCTCCGGGACGAGCTGCTGGGTCCCATCCTGCTCGGAGAGCGCGTGATAAAACTGGCTCAGGAGGCGGAGTCGCCGAAGGTGGACTGCACGGAGCTGGCGCGTAAGGTGCAGGTGGTCTGCGATAACCTCCGCTCCGTGGTGCGCGTGGTGTCTGGAACCCAGTGCGTCAACGAGCGCCCAATCCGCCGCATCGTCGGCGAGGTCTCGAAAAACATAGAGCGCACGTTAGCCCTCATCCGCAAGTGCAAGAAGCACGGTGGCGTCCTCCGCCAGGTCTTCTCCATGACCACCACCGCCGACTTCCGCAAAGTCCGGAGCCTTCTCGAATCTTCCAACGGCGACCTGGTGTGGCTCCTCACCATCTTGGACTCCAAAGACGGCACCAATGTCTCACTCCCCCCTATCGCCAGCAACGACCCTATTCTCGCTTGGGTCTGGACCTTCACCTACACTCTCCAATTGGGCCAGCCCAAGGACCGCGCAGAAGCCGCCACTGAACTCGGTTCTCTCGCCAGAGACAACGACCGTACAAAATTTATCATATTGGATGAAGGTGGGGTGATGCCCCTCCTCAAGCTTCTTAAAGAAGCTTCTTCCCCTGCTGCTCAGGTCGCTGCTGCCAATGCTCTTGTTAACATCACAACCAATCAAGACAGGGTTGTTACTTTCATTGTGGAGTCCCATGCTGTCCCCATCATTGTTCAGGTTCTCGGTGATTCCCCTATGAGGGTTCGTGTCTCTGTTGCCAATTTGGTCTCTGCTATGGCCGAGCAACATGAACTTGCTCGCGAGGAGTTCGTCAGGGCCAATGTCGCTAGGCCCCTTGTGTCCTTGTTGTCCATGGATATGGGTACTGTCCTCACTGACCCCGTGGCCGACCGCGCCACCAGCATTCACTCGCTTGTTCTCAATTTATCCAATGTTGGGGAGGCGAATTCAGATGGGAGTAGCCGCGGCTCCGGCCAGCATCGAAGAGATAGAGAGGTCGAGAGCCCCGAGTTGAGGAATGAGGTCAAAGTCAGTTGTGCTAAGGCTCTTTGGAAACTCTCCAATGGATGTCTCTCAAGTTGCAGGAAGATTACCGAGACTAAAGGTTTGCTTTGTCTTGCCAAGATTATTGAGTCCGAGAGTGGGGAGTTGCAGCTTAATTGTCTTATGGCTGTCATGGAGATTGCTGCCGTGGCGGAGTCCAATGCTGATCTTAGAAGAGCTGCTTTTAAGCGAACTGCGCCGGCGGCAAAGGCGGTTTTGGATCAGCTTTTGCGGGTGGTTCAGGAGGAGAGCGACCCGGCATTGCGGATTCCTGCTATTAAGGCAATTGGTTCCTTGGCCAGAAACTTCTCTGGGAAGGTTCCGCAGGTTATTGGTCCTTTAGTTGCTCAGCTTGGTAACAGAGATGTTGATGTGGCCAGTGAGGCTGCTATTGCTTTGGGGAAGTTTGTGTGCCCGGACAACTACAACTGTGTTGACCATTCTAAGGCAATACTTGAGCTTGATGGGATTCCTAAGCTAATGAGCCTGCTGCAGATAAATGATCGCCAACAAGTTCATGGCCTGAAATTACTTTGTTACCTTGCCTTAAATGTTGGTAACAGTAGGGTCCTTGAGCAAGAACGTGCCTTGAATACCCTAGAGAGATTTGCTCGTCCTGTTCAAGCACAACATCCTGATTTGAAGGACCTTTTTGCAAAGGCCTTACACCACCTCACTCTTTATCAGCCAGGAGCTCAATTGCACAGACAGCCCTTGGGGCTGTAA
>Glyma17g09295.1 sequence type=predicted peptide gene model=Glyma17g09295 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALVLQKATPPPSVLAASTHANKLPTPVISEPSATHALPPKGISTMSRTQSSHPLDPLSAAEISVAVATVRAAGATPELRDSIRFIEVVLLEPDKHVVALADAYFFSPFQPSLLPRTKGGAVIPSNLPPRCARIVVYNKKTNETSIWIVELSQVHAVTRRGHHRGKVISSQVVPDAQPPMDAMEYAECEAVVKDFPPFREAMKKRGIEDMDLVMVDAWCVGYYNEADDPNRRLTKPLIFCRGESDSPMENGYARPVEGIYVLVDMQNMLVIEFEDRKFVPLPPVDPLRRYTHGETRGGFDRSDIKPLQIIQLEGPSFRVDGSYVAWQKWNFRIGFTPREGLVIYSVAYIDGSQGRRPVAHRLSFVEMVVPYGDPNEPHYRKNAFHAGENGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGILWKHHDWRTGLAEVRRSRRLSVSFMCTVANYEYGFFWYFYQAIKLTGILSLGSLLPGEFRKYGTTIAPGLYAPVHQHFFVARMNMTVDSKPGDALNQVVEINVKVEEPGDNNVHNNAFYAEETLLKSELEAMRDCNPLAARHWIVRNTRIGNRTGQLTGYKLVPGSNCLPLAGSEAKFLRRAAFLRHNLWVTPYSHDQMFPGGEFPNQNPRVSQGLATWVKQNRSLEETDIVLWYVFGITQVPRLEDWPVMPVERIGFMLMPHGFFNCSPAVDPNPNPAPEEEKSLRDELLGPILLGERVIKLAQEAESPKVDCTELARKVQVVCDNLRSVVRVVSGTQCVNERPIRRIVGEVSKNIERTLALIRKCKKHGGVLRQVFSMTTTADFRKVRSLLESSNGDLVWLLTILDSKDGTNVSLPPIASNDPILAWVWTFTYTLQLGQPKDRAEAATELGSLARDNDRTKFIILDEGGVMPLLKLLKEASSPAAQVAAANALVNITTNQDRVVTFIVESHAVPIIVQVLGDSPMRVRVSVANLVSAMAEQHELAREEFVRANVARPLVSLLSMDMGTVLTDPVADRATSIHSLVLNLSNVGEANSDGSSRGSGQHRRDREVESPELRNEVKVSCAKALWKLSNGCLSSCRKITETKGLLCLAKIIESESGELQLNCLMAVMEIAAVAESNADLRRAAFKRTAPAAKAVLDQLLRVVQEESDPALRIPAIKAIGSLARNFSGKVPQVIGPLVAQLGNRDVDVASEAAIALGKFVCPDNYNCVDHSKAILELDGIPKLMSLLQINDRQQVHGLKLLCYLALNVGNSRVLEQERALNTLERFARPVQAQHPDLKDLFAKALHHLTLYQPGAQLHRQPLGL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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