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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G50160 | AT | Annotation by Michelle Graham. TAIR10: ferric reduction oxidase 8 | chr5:20415832-20418582 FORWARD LENGTH=728 | SoyBase | E_val: 0 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0019745 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentacyclic triterpenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0000293 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ferric-chelate reductase activity | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| KOG0039 | KOG | Ferric reductase, NADH/NADPH oxidase and related proteins | JGI | ISS | |
| PTHR11972 | Panther | NADPH OXIDASE | JGI | ISS | |
| PTHR11972:SF3 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF01794 | PFAM | Ferric reductase like transmembrane component | JGI | ISS | |
| PF08022 | PFAM | FAD-binding domain | JGI | ISS | |
| PF08030 | PFAM | Ferric reductase NAD binding domain | JGI | ISS | |
| UniRef100_B9RAV5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ferric-chelate reductase, putative n=1 Tax=Ricinus communis RepID=B9RAV5_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MTD0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTD0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g09260 not represented in the dataset |
Glyma17g09260 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g02600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g085100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g09260.2 sequence type=transcript gene model=Glyma17g09260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATTCGTAAAATATTACTGAAGAAAAATGCTTCATAAGTGACAGGCACTAAAAGGAAGTGGCGGGGCCAAAACATTTCCTCCTAAACGGCCATCATCAATCTTTCTATTTAGATTCCTTTATATATAGACCTTTATCATTATTGAAGTAAAAATAAAGAAAAGCTTGTGGCAGAGGGAGACTAGTCAGACATGGCATGCAGCACCACTTTACATGCTTCTATTCTAAAACTTCTCATCATTTTCTTATTCGCTGGTTGGGTTTCTCTTTGGCTTCTGAAGCCAACCCAAATATGGACAAGAAAATGGAAACAGGCAGAAGATAGCGCCAATGATACAATTTTTGGATACTATGGTCTTAGCTTTGCTGTGTACGCGTTTCCTATAATTGCTATTGCTATAATTGGACTTCTTTTATTGGATTTGAAAGCTGGATATCAAAGAAGCAGAAGCGCAAGGAGTACTCCATCAAAATCAAACTTCTTCTCAAATCCACTGGTGGTGAATACTACACTGGGAATCTTATCTAGTATTGAAATACTGATAGCTTTCCTTTTCATTGTCTTCTTAGCATGGACCTACTACTCTCGTATTTATACAGACTTCAAAAAGTTGATGCCATACAAATCACTGAAGTTGAATACGTGGCAACTCAAGTATCACAGAATAGCAACCCGGTTCGGGTTGCTAGCAGAAGCTTGCATGGCTTTGTTGCTTCTTCCTATTCTAAGGGGGTTGGCCGTGTTTCGCATACTTGGCATTCAATTTGAAGCTTCAGTTAGATACCACACATGGATTGGAACTGCAATGATACTTTTTGCTACAATACATGGCGCAAGCACTTTGTTGGTCTGGGGGGTCAGCCACCATATTGAGGATGAGATTTGGAAGTGGCAAAAGACTGGACGCATATACCTCGCTGGGGAGATTGCACTTGTTGTTGGGCTAGTCATTTGGGTCACTTCACTTCCCCAAATTAGAAGGAGAAAGTTTGAAATCTTCTACTACACACATCATTTGTATGCAGTCTTTCTAGTACTTTTCTTGTTTCATGTTGGGGATAGGCACTTTTATACTGTCTTCCCGGGAATATTCCTTTTTAGCCTTGATAAACTGATCCGAATCATACAATCAAGTCCAAAAACTTGCATGGTTTCAGCTAGAATTTTTCCAGGCAGAGCTCTGGAGCTAATTCTGCCCAAAGATCCAGGGATGAAATATAACCCTACTAGTGTTATATTTTTGAAGATTCCAACCATATCTCATCTTCAATGGCACTCTTTCAGTATCATATCTAGTTCCAGGGCTGATGATCACATTTTATCTGTGATAATTAAATGTGAAGGGTGGTGGACTAATTCTCTTTATGATCTGATCCATGCTGAACTAGACAAAACTGCAGATAAAAGGAAGGGAATACCGATTGCTATCGAAGGACCTTATGGACCTGCTTCATTAGACTTTTTGAGATATGACACCCTTCTTCTGGTTGCTGGGGGAAGTGGAATAACCCCATTTCTGAGCATTTTGGCGGAAGCTGATTCAGCTACCAACAAAAGTAGATTTCCCTCGAGAATACAACTTGTGTATGTCATTAAGAAGGCACAAGACTTTTGTCTGTTACATCCAATCTCACATCTGTTACTCAACCAATCAACTGAAAAGTTTCATTTGAATCTGAAATTGTTTGTAACCCAAGAAACACAAGCAGAGGTGGGAATTAGGGAGCTACTAAACGAGTTCTTTAAAGTAAGAACCCTGCAAGTGAACAGCATGTGTTCAAATTATGCAGCATACGGGCCTGAAAGTCCATCTTGGATGGCTGCCATTACAGGATTTTGCTCCATCACTTTCCTTATTTTCGTTATCTGTTTCAACCATATTATAATCCCCTCTGGAAAGCGCTCCAAAATGGCCAAAGAAAAGACTCCTTCTTGGGTTGTGGATCTTCTTCTGATAGCTGCTTTTGTCCTAGCTTTAGCTTTTAGCGCCTCGGTGGCAGCTATTTTGAGATGGAGAAGGCTGAGGAAAGGGATTCCACAAATATCACACAGAGAAATCCAACCCCTTGATCTAAGTTCAGCTGAAGCTAGGAATGCACTTGAAGACCATGAAGTGCATTTCGGGGGAAGGCCTAACTTTAAAGGTAGTGATCTCATTTTTTTTTTCTTTCCTTATGTTTCTGATACATAGTTGACAACTTAGTAGCTTTGAATTGAACAGATATATTTGGCAAGCTTCATGATGAAAGCGATGGATCTAATATCGGAGTTTTGGTTTGTGGACCTGAGAGCATGAAGGAATCGGTGGCGTTCGCATGCCAGCAGGAATCTGAGTGTTTTAAGGCTAGTGGAAAGAGAACAGAATCCTGCTTCACTTTCCACACTCTCAACTTCACACTGTAGTAGTCCAAGTATGGCTGCCCAAATTTGTGCGTTCAACAAGGCATAGATCTCAGTAAGCTTTCTGAGTGCCTCCGTGTATCTATCATTAGATATTTGAATGTAATACTCCAAAGGCGAAAGATTTAGGTAATGTCCACGAGTATTCTCACTATATATTTGAATGTAATACTAGTAGTCAAAAGGAGAAAGATTTGGGTAATGTTCCAAAGATAGTTTTGTTGTTTTCCAATAAAAACACGATAAGTGTTGAAGTTTTATCAATATGAAAACACGGCGCATGTAATAACTGTTACACATGCTGTATTTTCGTTAGAAAACGTAATCTATTGAATAGTATCATAGTTTTGTCCTAATCAAAACACCCTTTTTCCTTTTTTT
>Glyma17g09260.1 sequence type=CDS gene model=Glyma17g09260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATGCAGCACCACTTTACATGCTTCTATTCTAAAACTTCTCATCATTTTCTTATTCGCTGGTTGGGTTTCTCTTTGGCTTCTGAAGCCAACCCAAATATGGACAAGAAAATGGAAACAGGCAGAAGATAGCGCCAATGATACAATTTTTGGATACTATGGTCTTAGCTTTGCTGTGTACGCGTTTCCTATAATTGCTATTGCTATAATTGGACTTCTTTTATTGGATTTGAAAGCTGGATATCAAAGAAGCAGAAGCGCAAGGAGTACTCCATCAAAATCAAACTTCTTCTCAAATCCACTGGTGGTGAATACTACACTGGGAATCTTATCTAGTATTGAAATACTGATAGCTTTCCTTTTCATTGTCTTCTTAGCATGGACCTACTACTCTCGTATTTATACAGACTTCAAAAAGTTGATGCCATACAAATCACTGAAGTTGAATACGTGGCAACTCAAGTATCACAGAATAGCAACCCGGTTCGGGTTGCTAGCAGAAGCTTGCATGGCTTTGTTGCTTCTTCCTATTCTAAGGGGGTTGGCCGTGTTTCGCATACTTGGCATTCAATTTGAAGCTTCAGTTAGATACCACACATGGATTGGAACTGCAATGATACTTTTTGCTACAATACATGGCGCAAGCACTTTGTTGGTCTGGGGGGTCAGCCACCATATTGAGGATGAGATTTGGAAGTGGCAAAAGACTGGACGCATATACCTCGCTGGGGAGATTGCACTTGTTGTTGGGCTAGTCATTTGGGTCACTTCACTTCCCCAAATTAGAAGGAGAAAGTTTGAAATCTTCTACTACACACATCATTTGTATGCAGTCTTTCTAGTACTTTTCTTGTTTCATGTTGGGGATAGGCACTTTTATACTGTCTTCCCGGGAATATTCCTTTTTAGCCTTGATAAACTGATCCGAATCATACAATCAAGTCCAAAAACTTGCATGGTTTCAGCTAGAATTTTTCCAGGCAGAGCTCTGGAGCTAATTCTGCCCAAAGATCCAGGGATGAAATATAACCCTACTAGTGTTATATTTTTGAAGATTCCAACCATATCTCATCTTCAATGGCACTCTTTCAGTATCATATCTAGTTCCAGGGCTGATGATCACATTTTATCTGTGATAATTAAATGTGAAGGGTGGTGGACTAATTCTCTTTATGATCTGATCCATGCTGAACTAGACAAAACTGCAGATAAAAGGAAGGGAATACCGATTGCTATCGAAGGACCTTATGGACCTGCTTCATTAGACTTTTTGAGATATGACACCCTTCTTCTGGTTGCTGGGGGAAGTGGAATAACCCCATTTCTGAGCATTTTGGCGGAAGCTGATTCAGCTACCAACAAAAGTAGATTTCCCTCGAGAATACAACTTGTGTATGTCATTAAGAAGGCACAAGACTTTTGTCTGTTACATCCAATCTCACATCTGTTACTCAACCAATCAACTGAAAAGTTTCATTTGAATCTGAAATTGTTTGTAACCCAAGAAACACAAGCAGAGGTGGGAATTAGGGAGCTACTAAACGAGTTCTTTAAAGTAAGAACCCTGCAAGTGAACAGCATGTGTTCAAATTATGCAGCATACGGGCCTGAAAGTCCATCTTGGATGGCTGCCATTACAGGATTTTGCTCCATCACTTTCCTTATTTTCGTTATCTGTTTCAACCATATTATAATCCCCTCTGGAAAGCGCTCCAAAATGGCCAAAGAAAAGACTCCTTCTTGGGTTGTGGATCTTCTTCTGATAGCTGCTTTTGTCCTAGCTTTAGCTTTTAGCGCCTCGGTGGCAGCTATTTTGAGATGGAGAAGGCTGAGGAAAGGGATTCCACAAATATCACACAGAGAAATCCAACCCCTTGATCTAAGTTCAGCTGAAGCTAGGAATGCACTTGAAGACCATGAAGTGCATTTCGGGGGAAGGCCTAACTTTAAAGATATATTTGGCAAGCTTCATGATGAAAGCGATGGATCTAATATCGGAGTTTTGGTTTGTGGACCTGAGAGCATGAAGGAATCGGTGGCGTTCGCATGCCAGCAGGAATCTGAGTGTTTTAAGGCTAGTGGAAAGAGAACAGAATCCTGCTTCACTTTCCACACTCTCAACTTCACACTGTAG >Glyma17g09260.2 sequence type=CDS gene model=Glyma17g09260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATGCAGCACCACTTTACATGCTTCTATTCTAAAACTTCTCATCATTTTCTTATTCGCTGGTTGGGTTTCTCTTTGGCTTCTGAAGCCAACCCAAATATGGACAAGAAAATGGAAACAGGCAGAAGATAGCGCCAATGATACAATTTTTGGATACTATGGTCTTAGCTTTGCTGTGTACGCGTTTCCTATAATTGCTATTGCTATAATTGGACTTCTTTTATTGGATTTGAAAGCTGGATATCAAAGAAGCAGAAGCGCAAGGAGTACTCCATCAAAATCAAACTTCTTCTCAAATCCACTGGTGGTGAATACTACACTGGGAATCTTATCTAGTATTGAAATACTGATAGCTTTCCTTTTCATTGTCTTCTTAGCATGGACCTACTACTCTCGTATTTATACAGACTTCAAAAAGTTGATGCCATACAAATCACTGAAGTTGAATACGTGGCAACTCAAGTATCACAGAATAGCAACCCGGTTCGGGTTGCTAGCAGAAGCTTGCATGGCTTTGTTGCTTCTTCCTATTCTAAGGGGGTTGGCCGTGTTTCGCATACTTGGCATTCAATTTGAAGCTTCAGTTAGATACCACACATGGATTGGAACTGCAATGATACTTTTTGCTACAATACATGGCGCAAGCACTTTGTTGGTCTGGGGGGTCAGCCACCATATTGAGGATGAGATTTGGAAGTGGCAAAAGACTGGACGCATATACCTCGCTGGGGAGATTGCACTTGTTGTTGGGCTAGTCATTTGGGTCACTTCACTTCCCCAAATTAGAAGGAGAAAGTTTGAAATCTTCTACTACACACATCATTTGTATGCAGTCTTTCTAGTACTTTTCTTGTTTCATGTTGGGGATAGGCACTTTTATACTGTCTTCCCGGGAATATTCCTTTTTAGCCTTGATAAACTGATCCGAATCATACAATCAAGTCCAAAAACTTGCATGGTTTCAGCTAGAATTTTTCCAGGCAGAGCTCTGGAGCTAATTCTGCCCAAAGATCCAGGGATGAAATATAACCCTACTAGTGTTATATTTTTGAAGATTCCAACCATATCTCATCTTCAATGGCACTCTTTCAGTATCATATCTAGTTCCAGGGCTGATGATCACATTTTATCTGTGATAATTAAATGTGAAGGGTGGTGGACTAATTCTCTTTATGATCTGATCCATGCTGAACTAGACAAAACTGCAGATAAAAGGAAGGGAATACCGATTGCTATCGAAGGACCTTATGGACCTGCTTCATTAGACTTTTTGAGATATGACACCCTTCTTCTGGTTGCTGGGGGAAGTGGAATAACCCCATTTCTGAGCATTTTGGCGGAAGCTGATTCAGCTACCAACAAAAGTAGATTTCCCTCGAGAATACAACTTGTGTATGTCATTAAGAAGGCACAAGACTTTTGTCTGTTACATCCAATCTCACATCTGTTACTCAACCAATCAACTGAAAAGTTTCATTTGAATCTGAAATTGTTTGTAACCCAAGAAACACAAGCAGAGGTGGGAATTAGGGAGCTACTAAACGAGTTCTTTAAAGTAAGAACCCTGCAAGTGAACAGCATGTGTTCAAATTATGCAGCATACGGGCCTGAAAGTCCATCTTGGATGGCTGCCATTACAGGATTTTGCTCCATCACTTTCCTTATTTTCGTTATCTGTTTCAACCATATTATAATCCCCTCTGGAAAGCGCTCCAAAATGGCCAAAGAAAAGACTCCTTCTTGGGTTGTGGATCTTCTTCTGATAGCTGCTTTTGTCCTAGCTTTAGCTTTTAGCGCCTCGGTGGCAGCTATTTTGAGATGGAGAAGGCTGAGGAAAGGGATTCCACAAATATCACACAGAGAAATCCAACCCCTTGATCTAAGTTCAGCTGAAGCTAGGAATGCACTTGAAGACCATGAAGTGCATTTCGGGGGAAGGCCTAACTTTAAAGGTAGTGATCTCATTTTTTTTTTCTTTCCTTATGTTTCTGATACATAG
>Glyma17g09260.1 sequence type=predicted peptide gene model=Glyma17g09260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MACSTTLHASILKLLIIFLFAGWVSLWLLKPTQIWTRKWKQAEDSANDTIFGYYGLSFAVYAFPIIAIAIIGLLLLDLKAGYQRSRSARSTPSKSNFFSNPLVVNTTLGILSSIEILIAFLFIVFLAWTYYSRIYTDFKKLMPYKSLKLNTWQLKYHRIATRFGLLAEACMALLLLPILRGLAVFRILGIQFEASVRYHTWIGTAMILFATIHGASTLLVWGVSHHIEDEIWKWQKTGRIYLAGEIALVVGLVIWVTSLPQIRRRKFEIFYYTHHLYAVFLVLFLFHVGDRHFYTVFPGIFLFSLDKLIRIIQSSPKTCMVSARIFPGRALELILPKDPGMKYNPTSVIFLKIPTISHLQWHSFSIISSSRADDHILSVIIKCEGWWTNSLYDLIHAELDKTADKRKGIPIAIEGPYGPASLDFLRYDTLLLVAGGSGITPFLSILAEADSATNKSRFPSRIQLVYVIKKAQDFCLLHPISHLLLNQSTEKFHLNLKLFVTQETQAEVGIRELLNEFFKVRTLQVNSMCSNYAAYGPESPSWMAAITGFCSITFLIFVICFNHIIIPSGKRSKMAKEKTPSWVVDLLLIAAFVLALAFSASVAAILRWRRLRKGIPQISHREIQPLDLSSAEARNALEDHEVHFGGRPNFKDIFGKLHDESDGSNIGVLVCGPESMKESVAFACQQESECFKASGKRTESCFTFHTLNFTL* >Glyma17g09260.2 sequence type=predicted peptide gene model=Glyma17g09260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MACSTTLHASILKLLIIFLFAGWVSLWLLKPTQIWTRKWKQAEDSANDTIFGYYGLSFAVYAFPIIAIAIIGLLLLDLKAGYQRSRSARSTPSKSNFFSNPLVVNTTLGILSSIEILIAFLFIVFLAWTYYSRIYTDFKKLMPYKSLKLNTWQLKYHRIATRFGLLAEACMALLLLPILRGLAVFRILGIQFEASVRYHTWIGTAMILFATIHGASTLLVWGVSHHIEDEIWKWQKTGRIYLAGEIALVVGLVIWVTSLPQIRRRKFEIFYYTHHLYAVFLVLFLFHVGDRHFYTVFPGIFLFSLDKLIRIIQSSPKTCMVSARIFPGRALELILPKDPGMKYNPTSVIFLKIPTISHLQWHSFSIISSSRADDHILSVIIKCEGWWTNSLYDLIHAELDKTADKRKGIPIAIEGPYGPASLDFLRYDTLLLVAGGSGITPFLSILAEADSATNKSRFPSRIQLVYVIKKAQDFCLLHPISHLLLNQSTEKFHLNLKLFVTQETQAEVGIRELLNEFFKVRTLQVNSMCSNYAAYGPESPSWMAAITGFCSITFLIFVICFNHIIIPSGKRSKMAKEKTPSWVVDLLLIAAFVLALAFSASVAAILRWRRLRKGIPQISHREIQPLDLSSAEARNALEDHEVHFGGRPNFKGSDLIFFFFPYVSDT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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