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Report for Sequence Feature Glyma17g09170

Feature Type:gene_model
Chromosome:Gm17
Start:6784848
stop:6787903
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g09170
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G23060AT Annotation by Michelle Graham. TAIR10: calcium sensing receptor | chr5:7736760-7738412 REVERSE LENGTH=387 SoyBaseE_val: 0ISS
GO:0000023GO-bp Annotation by Michelle Graham. GO Biological Process: maltose metabolic process SoyBaseN/AISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0006636GO-bp Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process SoyBaseN/AISS
GO:0009416GO-bp Annotation by Michelle Graham. GO Biological Process: response to light stimulus SoyBaseN/AISS
GO:0009637GO-bp Annotation by Michelle Graham. GO Biological Process: response to blue light SoyBaseN/AISS
GO:0009657GO-bp Annotation by Michelle Graham. GO Biological Process: plastid organization SoyBaseN/AISS
GO:0009704GO-bp Annotation by Michelle Graham. GO Biological Process: de-etiolation SoyBaseN/AISS
GO:0009773GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem I SoyBaseN/AISS
GO:0010114GO-bp Annotation by Michelle Graham. GO Biological Process: response to red light SoyBaseN/AISS
GO:0010207GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II assembly SoyBaseN/AISS
GO:0010218GO-bp Annotation by Michelle Graham. GO Biological Process: response to far red light SoyBaseN/AISS
GO:0015979GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis SoyBaseN/AISS
GO:0015994GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll metabolic process SoyBaseN/AISS
GO:0019216GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of lipid metabolic process SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0019684GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction SoyBaseN/AISS
GO:0031408GO-bp Annotation by Michelle Graham. GO Biological Process: oxylipin biosynthetic process SoyBaseN/AISS
GO:0043085GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity SoyBaseN/AISS
GO:0071277GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to calcium ion SoyBaseN/AISS
GO:0090333GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of stomatal closure SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
PF00581PFAM Rhodanese-like domain JGI ISS
UniRef100_B0FPA3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Extracellular Ca2+ sensing receptor n=1 Tax=Glycine max RepID=B0FPA3_SOYBN SoyBaseE_val: 0ISS
UniRef100_C6TEH0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TEH0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g09170
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g09170
ParalogEvidenceComments
Glyma05g07680 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g09170 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g084300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g09170
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma17g09170
>Glyma17g09170.2   sequence type=transcript   gene model=Glyma17g09170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGGTGGACATAAAAGGCAATGAAAACTCTAGCAGCCCTTAAGATTTTGGCCACACATCTCTGATCACTCGTTGATCTATCATCCTTCATCGACCAACCAGTCTCCAAAGTTAGTGAGTGAGAGAGTAGCAGCTAGCAATGGAGATTTCTGCCCTAGCTTCTTCTGCTACTCCAAGACCTTCTCTTACAACTCCTTCCACTTCTCCACACACTGTAGTCACCACCACCTTCAGCAAACCTCAACTGAGACGCTCCCACGTAGCAGTATCACTTCCTACCTCAACCACCATTTCACTGCTCGCTCTCTTCGCCCCTCCAAGCGAAGCCAAAGCCGCTGTCAGCATCGCCAAAGACCAGATTGTCTCATCTCTCACCCAAGTTCAGGAAGTGGGTTCGGGTGTGCTGGACACGGCACAGCGTATTGCTGAAGTGATAGGGAACGCTTTGAAGCCTGGCATCGAAACGGCGTTGCCAATAGTTCAGCAGGCCGGAGAAGAAGCTTTGAAAATTGCTTCCCCTGCCATCTCCGAAGCTTCCAAGAAGGCCCAAGAAGCGCTCCAAAGCTCCGGTGTTGATACTGAACCTGTTATCTCTGCTGCTAAGACAGTGGCAGATGCTGCACAACAAACAACCAAGGTGATTGAAGTTGCCAAGCCAATAGCTTCCTCAACCGTCAAAACCATATCTTCTTCAGACCCTACTGTGATTGCTGGAACAGCAGGAGCACTATTTGTTGCTTACCTCCTAATTCCTCCTATCTGGTCTGTCATCTCGTCTAATCTTCGTGGTTACAAAGGAGACCTAACTCCTGCTCAAGCCCTTGATTTGATATCCACACAAAACTACGTTTTGATTGATATTAGGTCAGAGAAAGATAAGGACAAGGCTGGTATCCCTCGCCTTCCCTCTAATGCTAAAAACAGGATGGTTGCCATTCCTTTGGAAGAACTGCCAAGCAAGCTCAGAGGGCAGGTCAAGAATGTGAAGAAATTGGAAGCTGAAATAGTCGCTTTGAAGATTTCATATCTCAAGAAAATCAACAAAGGCACCAATGTTGTGATCTTGGATTCGTACTCGGACGTAGCAAAAACAGTTGGAAGAACACTAACCAGCCTTGGTTTTAAGAACACATGGATTGTTGCTGATGGATTCTCTGGGAACAAAGGGTGGTTGCAGAGTAGACTAGGAACAGATTCGTATAACTTCTCGTTCGCAGAGGTGCTGTCACCGTCAAGGGTCATCCCTGCGGCTGTGAGAAGTTTTGGCACAACCAGCCAATCTAGCACGAAGCTTCTTCCTGGGGCTGAATAACTTTTTTCTTCACTAAACTCTTGTGCAAATAGAAATTCACTCTTGTGCATGCTCGAGTCATCGAATATATTTATTTGATTATTTCATCAATGTCTAAATGTTTATTTCCAACCTTTTACCTTTGTGGGTGTTTCGAGTGGCTGCGGCTACATGCTCTTCCCTAAGTTGCAACGACCGAGGAGAATGCCAAAAGGTTGTAGTTGTTATATATACTTGTATTGGATGCTTTGGCCGAGATGTTTAGGCGTCTGTTTGGTTTAATGTTGAGACTTAAATGATCATTGAA
Coding sequences of Glyma17g09170
>Glyma17g09170.1   sequence type=CDS   gene model=Glyma17g09170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATTTCTGCCCTAGCTTCTTCTGCTACTCCAAGACCTTCTCTTACAACTCCTTCCACTTCTCCACACACTGTAGTCACCACCACCTTCAGCAAACCTCAACTGAGACGCTCCCACGTAGCAGTATCACTTCCTACCTCAACCACCATTTCACTGCTCGCTCTCTTCGCCCCTCCAAGCGAAGCCAAAGCCGCTGTCAGCATCGCCAAAGACCAGATTGTCTCATCTCTCACCCAAGTGGAGAAAACGCTGGATCAGGTTCAGGAAGTGGGTTCGGGTGTGCTGGACACGGCACAGCGTATTGCTGAAGTGATAGGGAACGCTTTGAAGCCTGGCATCGAAACGGCGTTGCCAATAGTTCAGCAGGCCGGAGAAGAAGCTTTGAAAATTGCTTCCCCTGCCATCTCCGAAGCTTCCAAGAAGGCCCAAGAAGCGCTCCAAAGCTCCGGTGTTGATACTGAACCTGTTATCTCTGCTGCTAAGACAGTGGCAGATGCTGCACAACAAACAACCAAGGTGATTGAAGTTGCCAAGCCAATAGCTTCCTCAACCGTCAAAACCATATCTTCTTCAGACCCTACTGTGATTGCTGGAACAGCAGGAGCACTATTTGTTGCTTACCTCCTAATTCCTCCTATCTGGTCTGTCATCTCGTCTAATCTTCGTGGTTACAAAGGAGACCTAACTCCTGCTCAAGCCCTTGATTTGATATCCACACAAAACTACGTTTTGATTGATATTAGGTCAGAGAAAGATAAGGACAAGGCTGGTATCCCTCGCCTTCCCTCTAATGCTAAAAACAGGATGGTTGCCATTCCTTTGGAAGAACTGCCAAGCAAGCTCAGAGGGCAGGTCAAGAATGTGAAGAAATTGGAAGCTGAAATAGTCGCTTTGAAGATTTCATATCTCAAGAAAATCAACAAAGGCACCAATGTTGTGATCTTGGATTCGTACTCGGACGTAGCAAAAACAGTTGGAAGAACACTAACCAGCCTTGGTTTTAAGAACACATGGATTGTTGCTGATGGATTCTCTGGGAACAAAGGGTGGTTGCAGAGTAGACTAGGAACAGATTCGTATAACTTCTCGTTCGCAGAGGTGCTGTCACCGTCAAGGGTCATCCCTGCGGCTGTGAGAAGTTTTGGCACAACCAGCCAATCTAGCACGAAGCTTCTTCCTGGGGCTGAATAA

>Glyma17g09170.2   sequence type=CDS   gene model=Glyma17g09170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATTTCTGCCCTAGCTTCTTCTGCTACTCCAAGACCTTCTCTTACAACTCCTTCCACTTCTCCACACACTGTAGTCACCACCACCTTCAGCAAACCTCAACTGAGACGCTCCCACGTAGCAGTATCACTTCCTACCTCAACCACCATTTCACTGCTCGCTCTCTTCGCCCCTCCAAGCGAAGCCAAAGCCGCTGTCAGCATCGCCAAAGACCAGATTGTCTCATCTCTCACCCAAGTTCAGGAAGTGGGTTCGGGTGTGCTGGACACGGCACAGCGTATTGCTGAAGTGATAGGGAACGCTTTGAAGCCTGGCATCGAAACGGCGTTGCCAATAGTTCAGCAGGCCGGAGAAGAAGCTTTGAAAATTGCTTCCCCTGCCATCTCCGAAGCTTCCAAGAAGGCCCAAGAAGCGCTCCAAAGCTCCGGTGTTGATACTGAACCTGTTATCTCTGCTGCTAAGACAGTGGCAGATGCTGCACAACAAACAACCAAGGTGATTGAAGTTGCCAAGCCAATAGCTTCCTCAACCGTCAAAACCATATCTTCTTCAGACCCTACTGTGATTGCTGGAACAGCAGGAGCACTATTTGTTGCTTACCTCCTAATTCCTCCTATCTGGTCTGTCATCTCGTCTAATCTTCGTGGTTACAAAGGAGACCTAACTCCTGCTCAAGCCCTTGATTTGATATCCACACAAAACTACGTTTTGATTGATATTAGGTCAGAGAAAGATAAGGACAAGGCTGGTATCCCTCGCCTTCCCTCTAATGCTAAAAACAGGATGGTTGCCATTCCTTTGGAAGAACTGCCAAGCAAGCTCAGAGGGCAGGTCAAGAATGTGAAGAAATTGGAAGCTGAAATAGTCGCTTTGAAGATTTCATATCTCAAGAAAATCAACAAAGGCACCAATGTTGTGATCTTGGATTCGTACTCGGACGTAGCAAAAACAGTTGGAAGAACACTAACCAGCCTTGGTTTTAAGAACACATGGATTGTTGCTGATGGATTCTCTGGGAACAAAGGGTGGTTGCAGAGTAGACTAGGAACAGATTCGTATAACTTCTCGTTCGCAGAGGTGCTGTCACCGTCAAGGGTCATCCCTGCGGCTGTGAGAAGTTTTGGCACAACCAGCCAATCTAGCACGAAGCTTCTTCCTGGGGCTGAATAA
Predicted protein sequences of Glyma17g09170
>Glyma17g09170.1   sequence type=predicted peptide   gene model=Glyma17g09170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEISALASSATPRPSLTTPSTSPHTVVTTTFSKPQLRRSHVAVSLPTSTTISLLALFAPPSEAKAAVSIAKDQIVSSLTQVEKTLDQVQEVGSGVLDTAQRIAEVIGNALKPGIETALPIVQQAGEEALKIASPAISEASKKAQEALQSSGVDTEPVISAAKTVADAAQQTTKVIEVAKPIASSTVKTISSSDPTVIAGTAGALFVAYLLIPPIWSVISSNLRGYKGDLTPAQALDLISTQNYVLIDIRSEKDKDKAGIPRLPSNAKNRMVAIPLEELPSKLRGQVKNVKKLEAEIVALKISYLKKINKGTNVVILDSYSDVAKTVGRTLTSLGFKNTWIVADGFSGNKGWLQSRLGTDSYNFSFAEVLSPSRVIPAAVRSFGTTSQSSTKLLPGAE*

>Glyma17g09170.2   sequence type=predicted peptide   gene model=Glyma17g09170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEISALASSATPRPSLTTPSTSPHTVVTTTFSKPQLRRSHVAVSLPTSTTISLLALFAPPSEAKAAVSIAKDQIVSSLTQVQEVGSGVLDTAQRIAEVIGNALKPGIETALPIVQQAGEEALKIASPAISEASKKAQEALQSSGVDTEPVISAAKTVADAAQQTTKVIEVAKPIASSTVKTISSSDPTVIAGTAGALFVAYLLIPPIWSVISSNLRGYKGDLTPAQALDLISTQNYVLIDIRSEKDKDKAGIPRLPSNAKNRMVAIPLEELPSKLRGQVKNVKKLEAEIVALKISYLKKINKGTNVVILDSYSDVAKTVGRTLTSLGFKNTWIVADGFSGNKGWLQSRLGTDSYNFSFAEVLSPSRVIPAAVRSFGTTSQSSTKLLPGAE*






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