Glyma17g09160 - SoyBase

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Report for Sequence Feature Glyma17g09160

Feature Type:	gene_model
Chromosome:	Gm17
Start:	6774921
stop:	6778817
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g09160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G23040	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3353) \| chr5:7729465-7730930 REVERSE LENGTH=258	SoyBase	E_val: 1.00E-125	ISS
GO:0008219	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell death	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
PF11833	PFAM	Protein of unknown function (DUF3353)	JGI		ISS
UniRef100_I1MTB8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MTB8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9FN50	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5g23040/MYJ24_3 n=1 Tax=Arabidopsis thaliana RepID=Q9FN50_ARATH	SoyBase	E_val: 7.00E-123	ISS

Expression Patterns of Glyma17g09160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g09160 not represented in the dataset	Glyma17g09160 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g09160

Paralog	Evidence	Comments
Glyma05g07670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g09160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g084100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g09160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g09160

Limit To All Plant Sequences

>Glyma17g09160.2   sequence type=transcript   gene model=Glyma17g09160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTGTTTTAAGAAATAAGGGGGTTTGTAGTATGCGCACGGGTGCGTAGTGCGTACCCCAGCAGGAAATGGATTACACTAGGATACAGAAGTAATCTGTTATCGTTATTCCTTCCACCCTGCCCGGTGGAACCAAACGAAGAAGACGTTCCGTTTTCCCTCTGCTTTTCCAAGTTTTCATCGACTCAACCATGCTATTCTTACATAACTAGGGTTAGGAGTTAGGGCGTTCTTATCGTTTTCGCTCCGTTAATTACAACAACGGCCAACATGGTTGTTCTTTCGCTTTCACCTCCCAGCCTCTCTACCGCTTTCCTCGCAAAGAAACTGTCTCCCCAAGAACACGCGGTGAAGCTAGCGACCTTTCGCAACAATTCATTTCGCATTAGATGCGCGGTGGATACGCCCTATGGAGGGAATGTTCAAAAATTCCCTCGAACCAATGTTTGGGATCCTTACCGACGCCTTGGTATTAGCCCTGATGCCTCTGAAGAAGAAATCTGGGGATCAAGAAATTTTCTGTTGCAACAATACTCTGGGCATGAGAGGAGTGAAGAATCAATAGAAGCAGCTTTTGAAAAAATATTGATGGCAAGTTTCGTACAGAGGAGGAAAACAAAAATTAATTTGAAAAGCAAGTTGAAAAAGAAAGTAGAAGAGTCTCCACCATGGGTGAAGAACTTGCTAAGCTTTGTTGAACTTCCACCGACTGAAGTTATCCTTAGAAGATTGTTTCTCTTTGGCTTCATGGGTGGCTGGAGTATTATGAATTCTGCTGAAACTGGACCTGCTTTTCAGGTGGCAATCTCTTTGGCTGCATGCATATATTTTCTTAACGAAAAGACAAAGAGCTTGGCTAGAGCATTCATTATTGGGTAAGTTGTGTAACTTGATCCAACTTGTGTTTTTTCACTATTGGGCTAGAGCATGCATATATTTTTTACTATTTGCCATTACCATCTACTTTGTTTTATTTTTGTACTGTTACAGGTTTGGAGCTCTAGTGGCTGGATGGGTCTCTGGTTCATTGCTGGTACCTAATATTCCATCTATGTTGCTGCGCCCAACTTGGACACTTGAACTCTTAACGTCATTGGTAGTTTATTTGTTCTTGTTCGTTGCCTGTACTTTCCTCAAGTGAAGTGGAGCCTATTCTTTCAACGTTATAGTCGGTGATGAGCTTATAGGTGATCAAACAATTTTTTTAAGCGAGCCAAATTGTTTACTGTCATCTTTTTTTATGAAAACAATTGTTTAAGTTGGCAATGTTCAGCTGAGATATTACTGAGCCTTAACTCCTTGTCTAAATTTCCGTTGGTTACGAGGTAATAAGTTCTTCCACCGTGGTTTGTCACTTTAATAACGGGTTCCTAACCTCTCCAATCGCCTGATATTCCTTTCTGTGCCCGTAACTTGGTTATTTGATTTAGAAATAAACTTGTGTACCAAGCGTGCAATATTTTAAATGCAATTTAATGAAAGATGGAAAACGAATGAAGTAGTTGCTAGGATTATTAACTAGGGTTCTGGAGCAACAGTTATTGTATTGAAAGATTTATTTGGTGTTTCAACTTTCAAATGTTTAAAAAGCATTTTTAGTTTTCCAATATCAATTTTAAGAACAGGGTATATATAGTTTAGGTAATTGAAAGACCAGCATAACTTGTTGGTGGCATTTCAAT

>Glyma17g09160.3   sequence type=transcript   gene model=Glyma17g09160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTGTTTTAAGAAATAAGGGGGTTTGTAGTATGCGCACGGGTGCGTAGTGCGTACCCCAGCAGGAAATGGATTACACTAGGATACAGAAGTAATCTGTTATCGTTATTCCTTCCACCCTGCCCGGTGGAACCAAACGAAGAAGACGTTCCGTTTTCCCTCTGCTTTTCCAAGTTTTCATCGACTCAACCATGCTATTCTTACATAACTAGGGTTAGGAGTTAGGGCGTTCTTATCGTTTTCGCTCCGTTAATTACAACAACGGCCAACATGGTTGTTCTTTCGCTTTCACCTCCCAGCCTCTCTACCGCTTTCCTCGCAAAGAAACTGTCTCCCCAAGAACACGCGGTGAAGCTAGCGACCTTTCGCAACAATTCATTTCGCATTAGATGCGCGGTGGATACGCCCTATGGAGGGAATGTTCAAAAATTCCCTCGAACCAATGTTTGGGATCCTTACCGACGCCTTGGTATTAGCCCTGATGCCTCTGAAGAAGAAATCTGGGGATCAAGAAATTTTCTGTTGCAACAATACTCTGGGCATGAGAGGAGTGAAGAATCAATAGAAGCAGCTTTTGAAAAAATATTGATGGCAAGTTTCGTACAGAGGAGGAAAACAAAAATTAATTTGAAAAGCAAGTTGAAAAAGAAAGTAGAAGAGTCTCCACCATGGGTGAAGAACTTGCTAAGCTTTGTTGAACTTCCACCGACTGAAGTTATCCTTAGAAGATTGTTTCTCTTTGGCTTCATGGGTGGCTGGAGTATTATGAATTCTGCTGAAACTGGACCTGCTTTTCAGGTTTGCTCTTAATTTCTTATGTTTTTCACTTCTCTGTGGTGTATAATCAAATACAAAGAATAAAACTGTATTTTATTTTTCAAAAAGAAAACAAAAATTGTAGGTGTCATTTTCTATAGGAATATTTGGATTGTGACACCCATAAATTTTAAAAGAGAACCAAATTATAAATTCAATAGGCATGTATTAACAGGGTTGTTCTCCTTATTGCTTGATTAAGTCAACTACCGATCTCTAGATTATACCCTTCACCCT

Coding sequences of Glyma17g09160

Limit To All Plant Sequences

>Glyma17g09160.1   sequence type=CDS   gene model=Glyma17g09160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGTTCTTTCGCTTTCACCTCCCAGCCTCTCTACCGCTTTCCTCGCAAAGAAACTGTCTCCCCAAGAACACGCGGTGAAGCTAGCGACCTTTCGCAACAATTCATTTCGCATTAGATGCGCGGTGGATACGCCCTATGGAGGGAATGTTCAAAAATTCCCTCGAACCAATGTTTGGGATCCTTACCGACGCCTTGGTATTAGCCCTGATGCCTCTGAAGAAGAAATCTGGGGATCAAGAAATTTTCTGTTGCAACAATACTCTGGGCATGAGAGGAGTGAAGAATCAATAGAAGCAGCTTTTGAAAAAATATTGATGGCAAGTTTCGTACAGAGGAGGAAAACAAAAATTAATTTGAAAAGCAAGTTGAAAAAGAAAGTAGAAGAGTCTCCACCATGGGTGAAGAACTTGCTAAGCTTTGTTGAACTTCCACCGACTGAAGTTATCCTTAGAAGATTGTTTCTCTTTGGCTTCATGGGTGGCTGGAGTATTATGAATTCTGCTGAAACTGGACCTGCTTTTCAGGTGGCAATCTCTTTGGCTGCATGCATATATTTTCTTAACGAAAAGACAAAGAGCTTGGCTAGAGCATTCATTATTGGGTTTGGAGCTCTAGTGGCTGGATGGGTCTCTGGTTCATTGCTGGTACCTAATATTCCATCTATGTTGCTGCGCCCAACTTGGACACTTGAACTCTTAACGTCATTGGTAGTTTATTTGTTCTTGTTCGTTGCCTGTACTTTCCTCAAGTGA

>Glyma17g09160.2   sequence type=CDS   gene model=Glyma17g09160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGTTCTTTCGCTTTCACCTCCCAGCCTCTCTACCGCTTTCCTCGCAAAGAAACTGTCTCCCCAAGAACACGCGGTGAAGCTAGCGACCTTTCGCAACAATTCATTTCGCATTAGATGCGCGGTGGATACGCCCTATGGAGGGAATGTTCAAAAATTCCCTCGAACCAATGTTTGGGATCCTTACCGACGCCTTGGTATTAGCCCTGATGCCTCTGAAGAAGAAATCTGGGGATCAAGAAATTTTCTGTTGCAACAATACTCTGGGCATGAGAGGAGTGAAGAATCAATAGAAGCAGCTTTTGAAAAAATATTGATGGCAAGTTTCGTACAGAGGAGGAAAACAAAAATTAATTTGAAAAGCAAGTTGAAAAAGAAAGTAGAAGAGTCTCCACCATGGGTGAAGAACTTGCTAAGCTTTGTTGAACTTCCACCGACTGAAGTTATCCTTAGAAGATTGTTTCTCTTTGGCTTCATGGGTGGCTGGAGTATTATGAATTCTGCTGAAACTGGACCTGCTTTTCAGGTGGCAATCTCTTTGGCTGCATGCATATATTTTCTTAACGAAAAGACAAAGAGCTTGGCTAGAGCATTCATTATTGGGTAA

>Glyma17g09160.3   sequence type=CDS   gene model=Glyma17g09160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGTTCTTTCGCTTTCACCTCCCAGCCTCTCTACCGCTTTCCTCGCAAAGAAACTGTCTCCCCAAGAACACGCGGTGAAGCTAGCGACCTTTCGCAACAATTCATTTCGCATTAGATGCGCGGTGGATACGCCCTATGGAGGGAATGTTCAAAAATTCCCTCGAACCAATGTTTGGGATCCTTACCGACGCCTTGGTATTAGCCCTGATGCCTCTGAAGAAGAAATCTGGGGATCAAGAAATTTTCTGTTGCAACAATACTCTGGGCATGAGAGGAGTGAAGAATCAATAGAAGCAGCTTTTGAAAAAATATTGATGGCAAGTTTCGTACAGAGGAGGAAAACAAAAATTAATTTGAAAAGCAAGTTGAAAAAGAAAGTAGAAGAGTCTCCACCATGGGTGAAGAACTTGCTAAGCTTTGTTGAACTTCCACCGACTGAAGTTATCCTTAGAAGATTGTTTCTCTTTGGCTTCATGGGTGGCTGGAGTATTATGAATTCTGCTGAAACTGGACCTGCTTTTCAGGTTTGCTCTTAA

Predicted protein sequences of Glyma17g09160

Limit To All Plant Sequences

>Glyma17g09160.1   sequence type=predicted peptide   gene model=Glyma17g09160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVLSLSPPSLSTAFLAKKLSPQEHAVKLATFRNNSFRIRCAVDTPYGGNVQKFPRTNVWDPYRRLGISPDASEEEIWGSRNFLLQQYSGHERSEESIEAAFEKILMASFVQRRKTKINLKSKLKKKVEESPPWVKNLLSFVELPPTEVILRRLFLFGFMGGWSIMNSAETGPAFQVAISLAACIYFLNEKTKSLARAFIIGFGALVAGWVSGSLLVPNIPSMLLRPTWTLELLTSLVVYLFLFVACTFLK*

>Glyma17g09160.2   sequence type=predicted peptide   gene model=Glyma17g09160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVLSLSPPSLSTAFLAKKLSPQEHAVKLATFRNNSFRIRCAVDTPYGGNVQKFPRTNVWDPYRRLGISPDASEEEIWGSRNFLLQQYSGHERSEESIEAAFEKILMASFVQRRKTKINLKSKLKKKVEESPPWVKNLLSFVELPPTEVILRRLFLFGFMGGWSIMNSAETGPAFQVAISLAACIYFLNEKTKSLARAFIIG*

>Glyma17g09160.3   sequence type=predicted peptide   gene model=Glyma17g09160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVLSLSPPSLSTAFLAKKLSPQEHAVKLATFRNNSFRIRCAVDTPYGGNVQKFPRTNVWDPYRRLGISPDASEEEIWGSRNFLLQQYSGHERSEESIEAAFEKILMASFVQRRKTKINLKSKLKKKVEESPPWVKNLLSFVELPPTEVILRRLFLFGFMGGWSIMNSAETGPAFQVCS*

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