Glyma17g09090 - SoyBase

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Report for Sequence Feature Glyma17g09090

Feature Type:	gene_model
Chromosome:	Gm17
Start:	6737158
stop:	6742887
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g09090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G08170	AT	Annotation by Michelle Graham. TAIR10: porphyromonas-type peptidyl-arginine deiminase family protein \| chr5:2628663-2631047 REVERSE LENGTH=383	SoyBase	E_val: 0	ISS
GO:0006596	GO-bp	Annotation by Michelle Graham. GO Biological Process: polyamine biosynthetic process	SoyBase	N/A	ISS
GO:0009446	GO-bp	Annotation by Michelle Graham. GO Biological Process: putrescine biosynthetic process	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0047632	GO-mf	Annotation by Michelle Graham. GO Molecular Function: agmatine deiminase activity	SoyBase	N/A	ISS
PF04371	PFAM	Porphyromonas-type peptidyl-arginine deiminase	JGI		ISS
UniRef100_B9RE78	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Agmatine deiminase, putative n=1 Tax=Ricinus communis RepID=B9RE78_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MTB1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTB1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g09090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g09090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g083400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g09090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g09090

Limit To All Plant Sequences

>Glyma17g09090.4   sequence type=transcript   gene model=Glyma17g09090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTCCTCCTTTAAGCCAGCACGCCAAAAAGAACTTCTTTGCAAAACACGACTGAGGACCTTGCAACACCGGCGTCTCCCTCCTTCCTCTCCTCTCTCTGCCTTTACCTTTGATTGTAGGTTTTTCATTATTTGGCGGCGAAACAGGGTTGAATATTTTTGTTTTAGCGTCTGAGCTTTGAATTACAGAGCAAAGTGAAGCGTGAACATGGTGATGCATCTAAACGGGACACCGTGCGCTCTCGGATTCCACATGCCTGCGGAGTGGGAAACCCACGCGCAGTGCTGGATGGGTTGGCCTGAACGTGCCGATAACTGGCGTGACGGCGCCGTTCACGCCCAACGCGTGTTTGCGAGGGTAGCGTCAGCAATCTCAAGATTCGAGTCTGTAACAGTTTGTGTTAGTTCTGCACAGTGGGAGAACGCGCGGAGTCAGCTACCGGAGCATATCAGGGTCGTTGAGATGAACATGAACGATTCTTGGTTCCGTGATATTGGACCTACTTTTGTTGTGAGAAGAAGCACCACGCCGGAATCTGGTGATGCAGTGAGCAGGATTGCAGGGATTGACTGGAATTTTAATAGTTGGGGAGGCTTAGAAGATGGATGTTACTGTGATTGGAGTCTTGATTTGCTTGTGGCTAAGAAGATTTTGGGAATTGAGAAGATTCCTAGATTTTCACATTCGATGGTGCTTGAAGGTGGAAGCATCCATGTGGATGGAGAAGGAACTTGTCTTACCACAGAAGAGTGCCTCTTGAACAAGAACAGGAACCCTCACTTGAGTAAGAACCAAATAGAGGATGAACTTAAGACATATCTTGGAATCCGGAAGGTTATATGGTTGCCTCGTGGATTATATGGAGATGATGACACAAATGGTCATATTGATAACATGTGCTGTTTTGTGAGGCCTGGTGTGGTTATGCTGTCTTGGATTGATGATGAAACTGATCCTCAGTATGAAAGATCTGTAGAAGCATATTCTTTGCTTTCAAATGAAACAGATGCTAATGGTAGAAAGTTTGAAATCATTAAACTCCATGTTCCCAGTCCACTCTATATGACAGAGGACGAGGCTGCTGGGGTTTCTCTGGATAATGAGGCTAAGCCAAGACTTCCAGGTACTAGGCTTGCTGCTTCCTATGTAAACTTTTACATTGCAAATAAAGCTATCATTGCACCACAATTTGGAGATAAAAAGTGGGATGATGAAGCTGTCCGAGTCCTATCTAAGGCCTTCCCTCATCATGAAGTTGTGGGAATTGAAGGTGCCAGGGAGATTGTTTTGGCCGGTGGAAATATACATTGCATTACTCAGCAACAACCAGCCATTTGAGCGGCGGCACTCTCGATATTCGTTGATAGGTGTTGTATTGTTGCTTATGGGTTTCCAGAATAAATTGATTTGGTTAAATTGCTTGGTTAGTTAGTTGGTTTGCTCCAATTGGGCATGTATGCTAATTTTTGGAGATTAGCAAAATCCAATAATTGCAGCCTGGATGAAAGTGTATGCAAATAGATGGAAAACCGTTGAAAATATAAAACCTAATTTATATTTAAATTGGGAAATTGTGGTTACTCTTAAATGATTGAATCGGAATTTTTAGTGGAACCAGCTATTGATTTAACTCAATCCTTCTTT

Coding sequences of Glyma17g09090

Limit To All Plant Sequences

>Glyma17g09090.3   sequence type=CDS   gene model=Glyma17g09090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGATGCATCTAAACGGGACACCGTGCGCTCTCGGATTCCACATGCCTGCGGAGTGGGAAACCCACGCGCAGTGCTGGATGGGTTGGCCTGAACGTGCCGATAACTGGCGTGACGGCGCCGTTCACGCCCAACGCGTGTTTGCGAGGGTAGCGTCAGCAATCTCAAGATTCGAGTCTGTAACAGTTTGTGTTAGTTCTGCACAGTGGGAGAACGCGCGGAGTCAGCTACCGGAGCATATCAGGGTCGTTGAGATGAACATGAACGATTCTTGGTTCCGTGATATTGGACCTACTTTTGTTGTGAGAAGAAGCACCACGCCGGAATCTGGTGATGCAGTGAGCAGGATTGCAGGGATTGACTGGAATTTTAATAGTTGGGGAGGCTTAGAAGATGGATGTTACTGTGATTGGAGTCTTGATTTGCTTGTGGCTAAGAAGATTTTGGGAATTGAGAAGATTCCTAGATTTTCACATTCGATGGTGCTTGAAGGTGGAAGCATCCATGTGGATGGAGAAGGAACTTGTCTTACCACAGAAGAGTGCCTCTTGAACAAGAACAGGAACCCTCACTTGAGTAAGAACCAAATAGAGGATGAACTTAAGACATATCTTGGAATCCGGAAGGTTATATGGTTGCCTCGTGGATTATATGGAGATGATGACACAAATGGTCATATTGATAACATGTGCTGTTTTGTGAGGCCTGGTGTGGTTATGCTGTCTTGGATTGATGATGAAACTGATCCTCAGTATGAAAGATCTGTAGAAGCATATTCTTTGCTTTCAAATGAAACAGATGCTAATGGTAGAAAGTTTGAAATCATTAAACTCCATGTTCCCAGTCCACTCTATATGACAGAGGACGAGGCTGCTGGGGTTTCTCTGGATAATGAGGCTAAGCCAAGACTTCCAGGTACTAGGCTTGCTGCTTCCTATGTAAACTTTTACATTGCAAATAAAGCTATCATTGCACCACAATTTGGAGATAAAAAGTGGGATGATGAAGCTGTCCGAGTCCTATCTAAGGCCTTCCCTCATCATGAAGTTGTGGGAATTGAAGGTGCCAGGGAGATTGTTTTGGCCGGTGGAAATATACATTGCATTACTCAGCAACAACCAGCCATTTGA

>Glyma17g09090.4   sequence type=CDS   gene model=Glyma17g09090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGATGCATCTAAACGGGACACCGTGCGCTCTCGGATTCCACATGCCTGCGGAGTGGGAAACCCACGCGCAGTGCTGGATGGGTTGGCCTGAACGTGCCGATAACTGGCGTGACGGCGCCGTTCACGCCCAACGCGTGTTTGCGAGGGTAGCGTCAGCAATCTCAAGATTCGAGTCTGTAACAGTTTGTGTTAGTTCTGCACAGTGGGAGAACGCGCGGAGTCAGCTACCGGAGCATATCAGGGTCGTTGAGATGAACATGAACGATTCTTGGTTCCGTGATATTGGACCTACTTTTGTTGTGAGAAGAAGCACCACGCCGGAATCTGGTGATGCAGTGAGCAGGATTGCAGGGATTGACTGGAATTTTAATAGTTGGGGAGGCTTAGAAGATGGATGTTACTGTGATTGGAGTCTTGATTTGCTTGTGGCTAAGAAGATTTTGGGAATTGAGAAGATTCCTAGATTTTCACATTCGATGGTGCTTGAAGGTGGAAGCATCCATGTGGATGGAGAAGGAACTTGTCTTACCACAGAAGAGTGCCTCTTGAACAAGAACAGGAACCCTCACTTGAGTAAGAACCAAATAGAGGATGAACTTAAGACATATCTTGGAATCCGGAAGGTTATATGGTTGCCTCGTGGATTATATGGAGATGATGACACAAATGGTCATATTGATAACATGTGCTGTTTTGTGAGGCCTGGTGTGGTTATGCTGTCTTGGATTGATGATGAAACTGATCCTCAGTATGAAAGATCTGTAGAAGCATATTCTTTGCTTTCAAATGAAACAGATGCTAATGGTAGAAAGTTTGAAATCATTAAACTCCATGTTCCCAGTCCACTCTATATGACAGAGGACGAGGCTGCTGGGGTTTCTCTGGATAATGAGGCTAAGCCAAGACTTCCAGGTACTAGGCTTGCTGCTTCCTATGTAAACTTTTACATTGCAAATAAAGCTATCATTGCACCACAATTTGGAGATAAAAAGTGGGATGATGAAGCTGTCCGAGTCCTATCTAAGGCCTTCCCTCATCATGAAGTTGTGGGAATTGAAGGTGCCAGGGAGATTGTTTTGGCCGGTGGAAATATACATTGCATTACTCAGCAACAACCAGCCATTTGA

Predicted protein sequences of Glyma17g09090

Limit To All Plant Sequences

>Glyma17g09090.3   sequence type=predicted peptide   gene model=Glyma17g09090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVMHLNGTPCALGFHMPAEWETHAQCWMGWPERADNWRDGAVHAQRVFARVASAISRFESVTVCVSSAQWENARSQLPEHIRVVEMNMNDSWFRDIGPTFVVRRSTTPESGDAVSRIAGIDWNFNSWGGLEDGCYCDWSLDLLVAKKILGIEKIPRFSHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLSKNQIEDELKTYLGIRKVIWLPRGLYGDDDTNGHIDNMCCFVRPGVVMLSWIDDETDPQYERSVEAYSLLSNETDANGRKFEIIKLHVPSPLYMTEDEAAGVSLDNEAKPRLPGTRLAASYVNFYIANKAIIAPQFGDKKWDDEAVRVLSKAFPHHEVVGIEGAREIVLAGGNIHCITQQQPAI*

>Glyma17g09090.4   sequence type=predicted peptide   gene model=Glyma17g09090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVMHLNGTPCALGFHMPAEWETHAQCWMGWPERADNWRDGAVHAQRVFARVASAISRFESVTVCVSSAQWENARSQLPEHIRVVEMNMNDSWFRDIGPTFVVRRSTTPESGDAVSRIAGIDWNFNSWGGLEDGCYCDWSLDLLVAKKILGIEKIPRFSHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLSKNQIEDELKTYLGIRKVIWLPRGLYGDDDTNGHIDNMCCFVRPGVVMLSWIDDETDPQYERSVEAYSLLSNETDANGRKFEIIKLHVPSPLYMTEDEAAGVSLDNEAKPRLPGTRLAASYVNFYIANKAIIAPQFGDKKWDDEAVRVLSKAFPHHEVVGIEGAREIVLAGGNIHCITQQQPAI*

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