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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G08170 | AT | Annotation by Michelle Graham. TAIR10: porphyromonas-type peptidyl-arginine deiminase family protein | chr5:2628663-2631047 REVERSE LENGTH=383 | SoyBase | E_val: 0 | ISS |
| GO:0006596 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polyamine biosynthetic process | SoyBase | N/A | ISS |
| GO:0009446 | GO-bp | Annotation by Michelle Graham. GO Biological Process: putrescine biosynthetic process | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0047632 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: agmatine deiminase activity | SoyBase | N/A | ISS |
| PF04371 | PFAM | Porphyromonas-type peptidyl-arginine deiminase | JGI | ISS | |
| UniRef100_B9RE78 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Agmatine deiminase, putative n=1 Tax=Ricinus communis RepID=B9RE78_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MTB1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTB1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g09090 not represented in the dataset |
Glyma17g09090 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g083400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g09090.4 sequence type=transcript gene model=Glyma17g09090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTTCCTCCTTTAAGCCAGCACGCCAAAAAGAACTTCTTTGCAAAACACGACTGAGGACCTTGCAACACCGGCGTCTCCCTCCTTCCTCTCCTCTCTCTGCCTTTACCTTTGATTGTAGGTTTTTCATTATTTGGCGGCGAAACAGGGTTGAATATTTTTGTTTTAGCGTCTGAGCTTTGAATTACAGAGCAAAGTGAAGCGTGAACATGGTGATGCATCTAAACGGGACACCGTGCGCTCTCGGATTCCACATGCCTGCGGAGTGGGAAACCCACGCGCAGTGCTGGATGGGTTGGCCTGAACGTGCCGATAACTGGCGTGACGGCGCCGTTCACGCCCAACGCGTGTTTGCGAGGGTAGCGTCAGCAATCTCAAGATTCGAGTCTGTAACAGTTTGTGTTAGTTCTGCACAGTGGGAGAACGCGCGGAGTCAGCTACCGGAGCATATCAGGGTCGTTGAGATGAACATGAACGATTCTTGGTTCCGTGATATTGGACCTACTTTTGTTGTGAGAAGAAGCACCACGCCGGAATCTGGTGATGCAGTGAGCAGGATTGCAGGGATTGACTGGAATTTTAATAGTTGGGGAGGCTTAGAAGATGGATGTTACTGTGATTGGAGTCTTGATTTGCTTGTGGCTAAGAAGATTTTGGGAATTGAGAAGATTCCTAGATTTTCACATTCGATGGTGCTTGAAGGTGGAAGCATCCATGTGGATGGAGAAGGAACTTGTCTTACCACAGAAGAGTGCCTCTTGAACAAGAACAGGAACCCTCACTTGAGTAAGAACCAAATAGAGGATGAACTTAAGACATATCTTGGAATCCGGAAGGTTATATGGTTGCCTCGTGGATTATATGGAGATGATGACACAAATGGTCATATTGATAACATGTGCTGTTTTGTGAGGCCTGGTGTGGTTATGCTGTCTTGGATTGATGATGAAACTGATCCTCAGTATGAAAGATCTGTAGAAGCATATTCTTTGCTTTCAAATGAAACAGATGCTAATGGTAGAAAGTTTGAAATCATTAAACTCCATGTTCCCAGTCCACTCTATATGACAGAGGACGAGGCTGCTGGGGTTTCTCTGGATAATGAGGCTAAGCCAAGACTTCCAGGTACTAGGCTTGCTGCTTCCTATGTAAACTTTTACATTGCAAATAAAGCTATCATTGCACCACAATTTGGAGATAAAAAGTGGGATGATGAAGCTGTCCGAGTCCTATCTAAGGCCTTCCCTCATCATGAAGTTGTGGGAATTGAAGGTGCCAGGGAGATTGTTTTGGCCGGTGGAAATATACATTGCATTACTCAGCAACAACCAGCCATTTGAGCGGCGGCACTCTCGATATTCGTTGATAGGTGTTGTATTGTTGCTTATGGGTTTCCAGAATAAATTGATTTGGTTAAATTGCTTGGTTAGTTAGTTGGTTTGCTCCAATTGGGCATGTATGCTAATTTTTGGAGATTAGCAAAATCCAATAATTGCAGCCTGGATGAAAGTGTATGCAAATAGATGGAAAACCGTTGAAAATATAAAACCTAATTTATATTTAAATTGGGAAATTGTGGTTACTCTTAAATGATTGAATCGGAATTTTTAGTGGAACCAGCTATTGATTTAACTCAATCCTTCTTT
>Glyma17g09090.3 sequence type=CDS gene model=Glyma17g09090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGATGCATCTAAACGGGACACCGTGCGCTCTCGGATTCCACATGCCTGCGGAGTGGGAAACCCACGCGCAGTGCTGGATGGGTTGGCCTGAACGTGCCGATAACTGGCGTGACGGCGCCGTTCACGCCCAACGCGTGTTTGCGAGGGTAGCGTCAGCAATCTCAAGATTCGAGTCTGTAACAGTTTGTGTTAGTTCTGCACAGTGGGAGAACGCGCGGAGTCAGCTACCGGAGCATATCAGGGTCGTTGAGATGAACATGAACGATTCTTGGTTCCGTGATATTGGACCTACTTTTGTTGTGAGAAGAAGCACCACGCCGGAATCTGGTGATGCAGTGAGCAGGATTGCAGGGATTGACTGGAATTTTAATAGTTGGGGAGGCTTAGAAGATGGATGTTACTGTGATTGGAGTCTTGATTTGCTTGTGGCTAAGAAGATTTTGGGAATTGAGAAGATTCCTAGATTTTCACATTCGATGGTGCTTGAAGGTGGAAGCATCCATGTGGATGGAGAAGGAACTTGTCTTACCACAGAAGAGTGCCTCTTGAACAAGAACAGGAACCCTCACTTGAGTAAGAACCAAATAGAGGATGAACTTAAGACATATCTTGGAATCCGGAAGGTTATATGGTTGCCTCGTGGATTATATGGAGATGATGACACAAATGGTCATATTGATAACATGTGCTGTTTTGTGAGGCCTGGTGTGGTTATGCTGTCTTGGATTGATGATGAAACTGATCCTCAGTATGAAAGATCTGTAGAAGCATATTCTTTGCTTTCAAATGAAACAGATGCTAATGGTAGAAAGTTTGAAATCATTAAACTCCATGTTCCCAGTCCACTCTATATGACAGAGGACGAGGCTGCTGGGGTTTCTCTGGATAATGAGGCTAAGCCAAGACTTCCAGGTACTAGGCTTGCTGCTTCCTATGTAAACTTTTACATTGCAAATAAAGCTATCATTGCACCACAATTTGGAGATAAAAAGTGGGATGATGAAGCTGTCCGAGTCCTATCTAAGGCCTTCCCTCATCATGAAGTTGTGGGAATTGAAGGTGCCAGGGAGATTGTTTTGGCCGGTGGAAATATACATTGCATTACTCAGCAACAACCAGCCATTTGA >Glyma17g09090.4 sequence type=CDS gene model=Glyma17g09090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGATGCATCTAAACGGGACACCGTGCGCTCTCGGATTCCACATGCCTGCGGAGTGGGAAACCCACGCGCAGTGCTGGATGGGTTGGCCTGAACGTGCCGATAACTGGCGTGACGGCGCCGTTCACGCCCAACGCGTGTTTGCGAGGGTAGCGTCAGCAATCTCAAGATTCGAGTCTGTAACAGTTTGTGTTAGTTCTGCACAGTGGGAGAACGCGCGGAGTCAGCTACCGGAGCATATCAGGGTCGTTGAGATGAACATGAACGATTCTTGGTTCCGTGATATTGGACCTACTTTTGTTGTGAGAAGAAGCACCACGCCGGAATCTGGTGATGCAGTGAGCAGGATTGCAGGGATTGACTGGAATTTTAATAGTTGGGGAGGCTTAGAAGATGGATGTTACTGTGATTGGAGTCTTGATTTGCTTGTGGCTAAGAAGATTTTGGGAATTGAGAAGATTCCTAGATTTTCACATTCGATGGTGCTTGAAGGTGGAAGCATCCATGTGGATGGAGAAGGAACTTGTCTTACCACAGAAGAGTGCCTCTTGAACAAGAACAGGAACCCTCACTTGAGTAAGAACCAAATAGAGGATGAACTTAAGACATATCTTGGAATCCGGAAGGTTATATGGTTGCCTCGTGGATTATATGGAGATGATGACACAAATGGTCATATTGATAACATGTGCTGTTTTGTGAGGCCTGGTGTGGTTATGCTGTCTTGGATTGATGATGAAACTGATCCTCAGTATGAAAGATCTGTAGAAGCATATTCTTTGCTTTCAAATGAAACAGATGCTAATGGTAGAAAGTTTGAAATCATTAAACTCCATGTTCCCAGTCCACTCTATATGACAGAGGACGAGGCTGCTGGGGTTTCTCTGGATAATGAGGCTAAGCCAAGACTTCCAGGTACTAGGCTTGCTGCTTCCTATGTAAACTTTTACATTGCAAATAAAGCTATCATTGCACCACAATTTGGAGATAAAAAGTGGGATGATGAAGCTGTCCGAGTCCTATCTAAGGCCTTCCCTCATCATGAAGTTGTGGGAATTGAAGGTGCCAGGGAGATTGTTTTGGCCGGTGGAAATATACATTGCATTACTCAGCAACAACCAGCCATTTGA
>Glyma17g09090.3 sequence type=predicted peptide gene model=Glyma17g09090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVMHLNGTPCALGFHMPAEWETHAQCWMGWPERADNWRDGAVHAQRVFARVASAISRFESVTVCVSSAQWENARSQLPEHIRVVEMNMNDSWFRDIGPTFVVRRSTTPESGDAVSRIAGIDWNFNSWGGLEDGCYCDWSLDLLVAKKILGIEKIPRFSHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLSKNQIEDELKTYLGIRKVIWLPRGLYGDDDTNGHIDNMCCFVRPGVVMLSWIDDETDPQYERSVEAYSLLSNETDANGRKFEIIKLHVPSPLYMTEDEAAGVSLDNEAKPRLPGTRLAASYVNFYIANKAIIAPQFGDKKWDDEAVRVLSKAFPHHEVVGIEGAREIVLAGGNIHCITQQQPAI* >Glyma17g09090.4 sequence type=predicted peptide gene model=Glyma17g09090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVMHLNGTPCALGFHMPAEWETHAQCWMGWPERADNWRDGAVHAQRVFARVASAISRFESVTVCVSSAQWENARSQLPEHIRVVEMNMNDSWFRDIGPTFVVRRSTTPESGDAVSRIAGIDWNFNSWGGLEDGCYCDWSLDLLVAKKILGIEKIPRFSHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLSKNQIEDELKTYLGIRKVIWLPRGLYGDDDTNGHIDNMCCFVRPGVVMLSWIDDETDPQYERSVEAYSLLSNETDANGRKFEIIKLHVPSPLYMTEDEAAGVSLDNEAKPRLPGTRLAASYVNFYIANKAIIAPQFGDKKWDDEAVRVLSKAFPHHEVVGIEGAREIVLAGGNIHCITQQQPAI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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