SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G73980 | AT | Annotation by Michelle Graham. TAIR10: Phosphoribulokinase / Uridine kinase family | chr1:27820292-27823527 REVERSE LENGTH=643 | SoyBase | E_val: 0 | ISS |
| GO:0006796 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphate-containing compound metabolic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016773 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor | SoyBase | N/A | ISS |
| KOG4203 | KOG | Armadillo/beta-Catenin/plakoglobin | JGI | ISS | |
| PTHR10285 | Panther | URIDINE KINASE RELATED | JGI | ISS | |
| PF00485 | PFAM | Phosphoribulokinase / Uridine kinase family | JGI | ISS | |
| PF01928 | PFAM | CYTH domain | JGI | ISS | |
| UniRef100_G7JT48 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Uridine-cytidine kinase C n=1 Tax=Medicago truncatula RepID=G7JT48_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MTB0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTB0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g09080 not represented in the dataset |
Glyma17g09080 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g07611 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g083300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g09080.2 sequence type=transcript gene model=Glyma17g09080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTGCTGTTTCACTTTATCTACTAGCTTCTTTTGATTGCTGTTCATCCTGTTTATTTATTTGTTTATTTAAATTTGTTCAATATTCTGCCTCACGAACTATATTTATAAACATACTTATTTCAATTTCACGATCCTATTCAATGCTTCGTTTCGTTTGGTTGAAGACTTGAAAGTCAATCCCTGAAATGTTTTCCAGACTTTTTTGAAATCCATAACAAAAAACAATTGTTTAATTTTTTAAGAAGTTTATATTTTAAATTTCTCTGTAGAGACTCGTAAATTTTGGGCCCAGAAAATGGTTTATGATCTTCAGTTAGTTTTCTTTGCATCGTGTTACGTGTTAGTGGGAAAACTTGGAATATATATATTTTTCCGCCATTTTGTTTGCGACTGTAAAGAAATGTTGTCAAAATGGCAATGAAAGGAAAACGGCTGCTGATTTAATTAGTTAGCACATACGACTCCTATAGTCGTTTTTGAAAATTCAGAATAGTTGATATTGATAGCACTACTTTTGATTTATCACATGAAAAGCCAACTTAGATAACATGACCATGCCTTGTGCAACTAATTAACCTCCATACATCTATGAATTGAACGGATGACGTCATGTGTGGATATGGATTTTCTTTACTGTTATAAACTATGGGACGGTGGAAGTTGACCCCCTTCAACTAATGATTTTGCTATAATGCAGGAATACATATTTGATCCAATTCATATTCTGTAACATGAAATTATATTTATTTTTTTTTTCAATTTCTTTACGTATATTTAAACCCTTGATCTTGTTCAAGTAAGATTGTGAACATTTGATCTTGATTGGCCATAAAAAGGGCGATTGGTAGTTATGAGTTGGAGTTGTTCACACCCACCCATTTGAGTGCAAAATATGCAATGAAAATAGGAGTGCATTTCCTCCCAAAATTGGGGAGACGATTTGCAACCAATAAAACGGGAAATATGAGTATTTACCAAGTAGTGGTGTAATTGTTGACCTTAATGCTCAAATTTGTGGGTTTTCTCCTCACTTAATGGTGCTTAACTTTTCCTCACTTCTACTCAATGTGGGACTTCACTTCACACTTGTACTCCAACAAGAAGGTAGCAGAAGGTTCCAACAGTGTCGCCAGCGGCAAGGAATTTAATGGCTTAGCATTGATTGGCGGAGGAGCAATTGGATCTGGGGCCATAGGTTTAGGGTTTGAGGATCAGACTAAGTTCCAGATACTGTATTGAATTTCAGAGAGAATTTAGAGAGAAGCATTTGTATTCTGTAAAATGAATTCAACCTAAGAAAAACAGAACTACAACAGGTATTTATAGGAGACAAGTTAGAGACTCTAAGCTCTAACGAACTCTAACTAACTCTGAGTTAGTTAGAGATGACAGCTGGAAGTTTTAGAGCTGAAGGCTGAAAGAGATAGTCTACTGAACTACTTCTGTACAGATGAAAAAATGTTTTACAGACTATACCCATACTCTAATATACAATTAAGACATCCAGTAAGCTTGTAAGCTGCCAAGGTAGTAACTAAATTATATTACTTTTATTTCTGTATTATATGTTTTGAAATGTAAAAATGCTATCTCTTGATTCCATGTGCAATTTATGCAGTTTTGAGTCATTATTTGTCTCAGTTTGGTTCCCATCTTTGCCGTTGCATTTTGATTGCCATTTTCATTTTCTGCAGCACATGGCTTGAACATCTGTGGTTTTCCTAATGGCACAAGATACTGTTTCTGGTGTTGACTCGCCTCGGCGACGTCTATTACGAGATCAGGTTCAAGTGGTTAAAAGAAAGGATTCCAATCGCTATGAAATTGTTCCTATCCAAGATTCTTTGTCATTTGAGAAAGGATTCTTCATATTTATTCGTGCATGCCAGTTGTTGGCTCAAAAGAACAATGGAATCATATTAGTAGGAGTTGCAGGTCCATCTGGAGCAGGGAAAACTGTTTTCACCGAGAAGGTCCTCAATTTTATGCCAAGCATAGCTGTCATAACAATGGATAATTATAATGATTCTAGTAGAATTATTGATGGAAACTTTGATGACCCTCGGTTGACAGATTATGATACCTTGCTCGAAAATATACAGGGTCTTAAAGCAGGGAAGCCTGTTCAAGTTCCAATATACGATTTCAAGTCTAGTTCTCGCATAGGTTACAGGACTGTTGAAGTCCCTAGCTCTCGTATTGTAATCATAGAAGGCATCTATGCATTAAGTGAAAAATCACGACCTTTGCTTGATCTTCGTGTTTCTGTCACTGGTGGAGTTCATTTTGATCTTGTCAAGCGTGTTTTGCGGGACATTCATCGTGCCGGTCAAGAGCCTGAAGAAATAATCCATCAAATCTCTGAAACGGTGTATCCTATGTATAAAGCTTTTATTGAGCCAGATCTCAAAACAGCTCATCTAAAAATTATTAACAAGTTTAATCCATTCTCTGGATTCCAGAATCCCACTTACATATTGAAGTCAGCAAGAGCTGTGACAGTTGATCAAATCAAGGCAATTATTGCTGCAGAGCATACTGAAACCAAAGAGGAAACGTATGACATATTTCTTCTACCCCCTGGGGAAGACCCTGAAGCTTGTCAATCATATCTGAGAATGAGAAACCGTGATGGAAAGTACAATCTCATGTTTGAGGAATGGGTGACAGATAGTCCATTCATAATATCACCTAGAATTACTTTTGAGGTCAGCGTGCGCCTTCTTGGAGGGCTGATGGCCTTGGGATACACAATTGCAGCTATCCTGAAAAGAAGCAGCCATGTCTTTCATGATGATAAAGTGACCATAAAAACTGATTGGCTAGAACAACTTAATCGCACCTATGTTCAGGTTCAAGGGAAAGACAGAAACTATTGTAAATTTGTAGCAGAGAAACTGGGGTTGGATGGTTCCTATGTTCCTCGCACTTACATTGAACAAATCCAGCTTGAAAAGCTTGTAAATGATGTGATGGCATTGCCAGATGATCTTAAGACAAAACTCAGCATAGATGATGACTTGGTTTCAAGCCCCAAAGAAGCCCTTTCCAGAGCTTCTGCAGATAGGAGAATGAAGTATCTTAATCGTGGTATTTCACAATCATATTCAACTCAAAGGGACAAGATTCTACCTAAGCTGACTAAACTTGCTATAAATAACAGAAGATTCGATGCAAGAGCGCTAGAATCACCTGCACCAATTGCTAACCAAGGAGTCATCACACAGCTTTCTGATCAAATTTCCACATTAAATGAAAGAATGGACGAATTCACCTCCCGTATTGAAGAGCTGAATTCAAAGTTCGCTATCAGTAAAGATTCAGCAGCCAGTCAACAAAACTTGGCTTTACAGGCTGAGGCCTGCAATGGCTCTGGCCCCACTTCCTTCTTTGTAACTGGACTAAGCAATGGCTCATTGACTGGATCATTGCTACCTAATTCTTCATCATCTTCTCAATTGGCTAATAAAGAGTCTCCCCTGATGGAAGAGGTACTAGTTATTGCACGAGGACAACGTCAAATCATGCATCAACTAGACACTCTGAGCAATTTTTTGCATGAATACTTTGGAGAAAGGTCACGCCTGGGAAGACCAGACCATACAGGAAGAATGCGTGAAGCTGAATCCGTTGCCATCCCCCTGGTTCTGACTCTGGCCTTTGGTGCTGTTGGTGTGCTTTTGTTCAGAGGTTTTACATCCCAAAAATAATGTGTATATATTTTGTTTCTTGTCAAATTGTCATCACTGTGTATGAGACAAACTTCATAAGTATATCTAAAGCATAAAGGGTTTATGAAAACAATTACCAATCTGTGAGGGACTGCCTCACATTAAAGTAGTAGTATGTTGGCATTCACTTAAGCTGTAATATATAGCTTCTGTATATCTTTTTTTTCCTCGTTAAATAATTCGTCTACTTGGTGGAATACCGAACTTGCATTGCATATATTATAATTGTTCTTTATTCTCATTAGCTTTTCCCCTTGACATTTCATTTTATGATTTATGTGAATAGAT
>Glyma17g09080.1 sequence type=CDS gene model=Glyma17g09080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACAAGATACTGTTTCTGGTGTTGACTCGCCTCGGCGACGTCTATTACGAGATCAGGTTCAAGTGGTTAAAAGAAAGGATTCCAATCGCTATGAAATTGTTCCTATCCAAGATTCTTTGTCATTTGAGAAAGGATTCTTCATATTTATTCGTGCATGCCAGTTGTTGGCTCAAAAGAACAATGGAATCATATTAGTAGGAGTTGCAGGTCCATCTGGAGCAGGGAAAACTGTTTTCACCGAGAAGGTCCTCAATTTTATGCCAAGCATAGCTGTCATAACAATGGATAATTATAATGATTCTAGTAGAATTATTGATGGAAACTTTGATGACCCTCGGTTGACAGATTATGATACCTTGCTCGAAAATATACAGGGTCTTAAAGCAGGGAAGCCTGTTCAAGTTCCAATATACGATTTCAAGTCTAGTTCTCGCATAGGTTACAGGACTGTTGAAGTCCCTAGCTCTCGTATTGTAATCATAGAAGGCATCTATGCATTAAGTGAAAAATCACGACCTTTGCTTGATCTTCGTGTTTCTGTCACTGGTGGAGTTCATTTTGATCTTGTCAAGCGTGTTTTGCGGGACATTCATCGTGCCGGTCAAGAGCCTGAAGAAATAATCCATCAAATCTCTGAAACGGTGTATCCTATGTATAAAGCTTTTATTGAGCCAGATCTCAAAACAGCTCATCTAAAAATTATTAACAAGTTTAATCCATTCTCTGGATTCCAGAATCCCACTTACATATTGAAGTCAGCAAGAGCTGTGACAGTTGATCAAATCAAGGCAATTATTGCTGCAGAGCATACTGAAACCAAAGAGGAAACGTATGACATATTTCTTCTACCCCCTGGGGAAGACCCTGAAGCTTGTCAATCATATCTGAGAATGAGAAACCGTGATGGAAAGTACAATCTCATGTTTGAGGAATGGGTGACAGATAGTCCATTCATAATATCACCTAGAATTACTTTTGAGGTCAGCGTGCGCCTTCTTGGAGGGCTGATGGCCTTGGGATACACAATTGCAGCTATCCTGAAAAGAAGCAGCCATGTCTTTCATGATGATAAAGTGACCATAAAAACTGATTGGCTAGAACAACTTAATCGCACCTATGTTCAGGTTCAAGGGAAAGACAGAAACTATTGTAAATTTGTAGCAGAGAAACTGGGGTTGGATGGTTCCTATGTTCCTCGCACTTACATTGAACAAATCCAGCTTGAAAAGCTTGTAAATGATGTGATGGCATTGCCAGATGATCTTAAGACAAAACTCAGCATAGATGATGACTTGGTTTCAAGCCCCAAAGAAGCCCTTTCCAGAGCTTCTGCAGATAGGAGAATGAAGTATCTTAATCGTGGTATTTCACAATCATATTCAACTCAAAGGGACAAGATTCTACCTAAGCTGACTAAACTTGCTATAAATAACAGAAGATTCGATGCAAGAGCGCTAGAATCACCTGCACCAATTGCTAACCAAGGAGTCATCACACAGCTTTCTGATCAAATTTCCACATTAAATGAAAGAATGGACGAATTCACCTCCCGTATTGAAGAGCTGAATTCAAAGTTCGCTATCAGTAAAGATTCAGCAGCCAGTCAACAAAACTTGGCTTTACAGGCTGAGGCCTGCAATGGCTCTGGCCCCACTTCCTTCTTTGTAACTGGACTAAGCAATGGCTCATTGACTGGATCATTGCTACCTAATTCTTCATCATCTTCTCAATTGGCTAATAAAGAGTCTCCCCTGATGGAAGAGGTACTAGTTATTGCACGAGGACAACGTCAAATCATGCATCAACTAGACACTCTGAGCAATTTTTTGCATGAATACTTTGGAGAAAGGTCACGCCTGGGAAGACCAGACCATACAGGAAGAATGCGTGAAGCTGAATCCGTTGCCATCCCCCTGGTTCTGACTCTGGCCTTTGGTGCTGTTGGTGTGCTTTTGTTCAGAGGTTTTACATCCCAAAAATAA >Glyma17g09080.2 sequence type=CDS gene model=Glyma17g09080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACAAGATACTGTTTCTGGTGTTGACTCGCCTCGGCGACGTCTATTACGAGATCAGGTTCAAGTGGTTAAAAGAAAGGATTCCAATCGCTATGAAATTGTTCCTATCCAAGATTCTTTGTCATTTGAGAAAGGATTCTTCATATTTATTCGTGCATGCCAGTTGTTGGCTCAAAAGAACAATGGAATCATATTAGTAGGAGTTGCAGGTCCATCTGGAGCAGGGAAAACTGTTTTCACCGAGAAGGTCCTCAATTTTATGCCAAGCATAGCTGTCATAACAATGGATAATTATAATGATTCTAGTAGAATTATTGATGGAAACTTTGATGACCCTCGGTTGACAGATTATGATACCTTGCTCGAAAATATACAGGGTCTTAAAGCAGGGAAGCCTGTTCAAGTTCCAATATACGATTTCAAGTCTAGTTCTCGCATAGGTTACAGGACTGTTGAAGTCCCTAGCTCTCGTATTGTAATCATAGAAGGCATCTATGCATTAAGTGAAAAATCACGACCTTTGCTTGATCTTCGTGTTTCTGTCACTGGTGGAGTTCATTTTGATCTTGTCAAGCGTGTTTTGCGGGACATTCATCGTGCCGGTCAAGAGCCTGAAGAAATAATCCATCAAATCTCTGAAACGGTGTATCCTATGTATAAAGCTTTTATTGAGCCAGATCTCAAAACAGCTCATCTAAAAATTATTAACAAGTTTAATCCATTCTCTGGATTCCAGAATCCCACTTACATATTGAAGTCAGCAAGAGCTGTGACAGTTGATCAAATCAAGGCAATTATTGCTGCAGAGCATACTGAAACCAAAGAGGAAACGTATGACATATTTCTTCTACCCCCTGGGGAAGACCCTGAAGCTTGTCAATCATATCTGAGAATGAGAAACCGTGATGGAAAGTACAATCTCATGTTTGAGGAATGGGTGACAGATAGTCCATTCATAATATCACCTAGAATTACTTTTGAGGTCAGCGTGCGCCTTCTTGGAGGGCTGATGGCCTTGGGATACACAATTGCAGCTATCCTGAAAAGAAGCAGCCATGTCTTTCATGATGATAAAGTGACCATAAAAACTGATTGGCTAGAACAACTTAATCGCACCTATGTTCAGGTTCAAGGGAAAGACAGAAACTATTGTAAATTTGTAGCAGAGAAACTGGGGTTGGATGGTTCCTATGTTCCTCGCACTTACATTGAACAAATCCAGCTTGAAAAGCTTGTAAATGATGTGATGGCATTGCCAGATGATCTTAAGACAAAACTCAGCATAGATGATGACTTGGTTTCAAGCCCCAAAGAAGCCCTTTCCAGAGCTTCTGCAGATAGGAGAATGAAGTATCTTAATCGTGGTATTTCACAATCATATTCAACTCAAAGGGACAAGATTCTACCTAAGCTGACTAAACTTGCTATAAATAACAGAAGATTCGATGCAAGAGCGCTAGAATCACCTGCACCAATTGCTAACCAAGGAGTCATCACACAGCTTTCTGATCAAATTTCCACATTAAATGAAAGAATGGACGAATTCACCTCCCGTATTGAAGAGCTGAATTCAAAGTTCGCTATCAGTAAAGATTCAGCAGCCAGTCAACAAAACTTGGCTTTACAGGCTGAGGCCTGCAATGGCTCTGGCCCCACTTCCTTCTTTGTAACTGGACTAAGCAATGGCTCATTGACTGGATCATTGCTACCTAATTCTTCATCATCTTCTCAATTGGCTAATAAAGAGTCTCCCCTGATGGAAGAGGTACTAGTTATTGCACGAGGACAACGTCAAATCATGCATCAACTAGACACTCTGAGCAATTTTTTGCATGAATACTTTGGAGAAAGGTCACGCCTGGGAAGACCAGACCATACAGGAAGAATGCGTGAAGCTGAATCCGTTGCCATCCCCCTGGTTCTGACTCTGGCCTTTGGTGCTGTTGGTGTGCTTTTGTTCAGAGGTTTTACATCCCAAAAATAA
>Glyma17g09080.1 sequence type=predicted peptide gene model=Glyma17g09080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAQDTVSGVDSPRRRLLRDQVQVVKRKDSNRYEIVPIQDSLSFEKGFFIFIRACQLLAQKNNGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIQGLKAGKPVQVPIYDFKSSSRIGYRTVEVPSSRIVIIEGIYALSEKSRPLLDLRVSVTGGVHFDLVKRVLRDIHRAGQEPEEIIHQISETVYPMYKAFIEPDLKTAHLKIINKFNPFSGFQNPTYILKSARAVTVDQIKAIIAAEHTETKEETYDIFLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFHDDKVTIKTDWLEQLNRTYVQVQGKDRNYCKFVAEKLGLDGSYVPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDLVSSPKEALSRASADRRMKYLNRGISQSYSTQRDKILPKLTKLAINNRRFDARALESPAPIANQGVITQLSDQISTLNERMDEFTSRIEELNSKFAISKDSAASQQNLALQAEACNGSGPTSFFVTGLSNGSLTGSLLPNSSSSSQLANKESPLMEEVLVIARGQRQIMHQLDTLSNFLHEYFGERSRLGRPDHTGRMREAESVAIPLVLTLAFGAVGVLLFRGFTSQK* >Glyma17g09080.2 sequence type=predicted peptide gene model=Glyma17g09080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAQDTVSGVDSPRRRLLRDQVQVVKRKDSNRYEIVPIQDSLSFEKGFFIFIRACQLLAQKNNGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIQGLKAGKPVQVPIYDFKSSSRIGYRTVEVPSSRIVIIEGIYALSEKSRPLLDLRVSVTGGVHFDLVKRVLRDIHRAGQEPEEIIHQISETVYPMYKAFIEPDLKTAHLKIINKFNPFSGFQNPTYILKSARAVTVDQIKAIIAAEHTETKEETYDIFLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFHDDKVTIKTDWLEQLNRTYVQVQGKDRNYCKFVAEKLGLDGSYVPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDLVSSPKEALSRASADRRMKYLNRGISQSYSTQRDKILPKLTKLAINNRRFDARALESPAPIANQGVITQLSDQISTLNERMDEFTSRIEELNSKFAISKDSAASQQNLALQAEACNGSGPTSFFVTGLSNGSLTGSLLPNSSSSSQLANKESPLMEEVLVIARGQRQIMHQLDTLSNFLHEYFGERSRLGRPDHTGRMREAESVAIPLVLTLAFGAVGVLLFRGFTSQK*
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