Glyma17g09030 - SoyBase

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Report for Sequence Feature Glyma17g09030

Feature Type:	gene_model
Chromosome:	Gm17
Start:	6700506
stop:	6702337
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g09030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_I1MTA4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTA4_SOYBN	SoyBase	E_val: 1.00E-97	ISS

Expression Patterns of Glyma17g09030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g09030 not represented in the dataset	Glyma17g09030 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g09030

Paralog	Evidence	Comments
Glyma05g07551	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g09030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g082800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g09030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g09030

Limit To All Plant Sequences

>Glyma17g09030.3   sequence type=transcript   gene model=Glyma17g09030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACGCAACAATCTAGTCACTCAGAAACTTGTCGCATAAAACATTTTCCTCGATACATACTATTATCATAAAAAGCTTACGTACAAGTCGTCGGTTTTCAACATTAAAATCCTTATTGCCACCATGTCTTTCTAGTTTCTACAAAGAAAAAAAGAAAAAAAAAATTCAGGCATGAAATCATAATAACTTGATTACTCCCCCGACAAGCCAAAAAAGAAGCAGAGGAATTTTCATTTTTCAAACAGAGAGAGCTCATAGTAGTGTGATTTTGCCATTTTTTGTGAAGTTAAAAAAATTCTCGCTTGTTTCTCACGAGAGAACAAGAGAATTAAAGGTTTGAAAGCTGAATCAGGATGGAGCCATTCGGTGCAGAGGGATGTCACAGCAGTGAATCTGGATGGACCATGTATATTGGGTCCCCCATAGATGATGCTGGACATAGTAGTGACAACGACGACAACAACAAGAAAGGTACTCAAGCTCATCCACAAGATGATGATGATGATGATGATGAAAGTGATGATTCTATGGCTTCTGATGCGTCTTCTGGGCCAAGTCATCATCATGGCTTTGCGGATTTCCGCCGAGATGCCGAAGAAGAAAATGATGAAAACAAGTATTGCTTAGAGAAGAAAGCAGGTAAAACTCAACACAAGCAAATGGAAGGGAAAAAGGTGGAAAAGAATGGGATGTTAATAGTTGATAGCAAAGATAAGTCTCCAGTTCAGGGTTGTGGAAAGGTGAGAAAAAATTACTTTGTGGGAAAAAGGAAATAGCTAGGTGTATTTCCCTGCTCCACAGCTGGTTAATTTGTTGATGTTTAGGTTTTCTTTTGAAACTAGATAATTAATTAATAGCTGCAATTACTGTGTTGTACTCATTTGCATTTCCATAGTTGTTGTGATAGTGATGGCCATTTCACTATATTAGCCACAGCATGCAAGGATTAAAGGGTATGGATGCATATCTGGTTAGTTCTGAAATATGTTGTTCAGATATGTACTAGTATGTTACTTTTTGTATGCTATGTCTCTGAGGCATTACAAACATTGAAGGCTTTTTTTTTTTATTATTATAATTTTTATGTTTAGACTTTGATATTCGTAAAACAAGGCATTGGTAGAGCATCCCCAATTAATTGCATGAGATTCCACCAAGTTGTACTGAACTGAATAAT

>Glyma17g09030.4   sequence type=transcript   gene model=Glyma17g09030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACGCAACAATCTAGTCACTCAGAAACTTGTCGCATAAAACATTTTCCTCGATACATACTATTATCATAAAAAGCTTACGTACAAGTCGTCGGTTTTCAACATTAAAATCCTTATTGCCACCATGTCTTTCTAGTTTCTACAAAGAAAAAAAGAAAAAAAAAATTCAGGCATGAAATCATAATAACTTGATTACTCCCCCGACAAGCCAAAAAAGAAGCAGAGGAATTTTCATTTTTCAAACAGAGAGAGCTCATAGTAGTGTGATTTTGCCATTTTTTGTGAAGTTAAAAAAATTCTCGCTTGTTTCTCACGAGAGAACAAGAGAATTAAAGGTTTGAAAGCTGAATCAGGTGGTGTTGTGTGGTGAAAGACTTGTCTCAAGGCCATTAAAGAGATTCTGATCACATTTTGCTTTGAGTCTTTGATACATACATACATATCTCAAGTGCTGGTGTTTTCTCAGGATGGAGCCATTCGGTGCAGAGGGATGTCACAGCAGTGAATCTGGATGGACCATGTATATTGGGTCCCCCATAGATGATGCTGGACATAGTAGTGACAACGACGACAACAACAAGAAAGGTACTCAAGCTCATCCACAAGATGATGATGATGATGATGATGAAAGTGATGATTCTATGGCTTCTGATGCGTCTTCTGGGCCAAGTCATCATCATGGCTTTGCGGATTTCCGCCGAGATGCCGAAGAAGAAAATGATGAAAACAAGTATTGCTTAGAGAAGAAAGCAGGTAAAACTCAACACAAGCAAATGGAAGGGAAAAAGGTGGAAAAGAATGGGATGTTAATAGTTGATAGCAAAGATAAGTCTCCAGTTCAGGGTTGTGGAAAGGTGAGAAAAAATTACTTTGTGGGAAAAAGGAAATAGCTAGGTGTATTTCCCTGCTCCACAGCTGGTTAATTTGTTGATGTTTAGGTTTTCTTTTGAAACTAGATAATTAATTAATAGCTGCAATTACTGTGTTGTACTCATTTGCATTTCCATAGTTGTTGTGATAGTGATGGCCATTTCACTATATTAGCCACAGCATGCAAGGATTAAAGGGTATGGATGCATATCTGGTTAGTTCTGAAATATGTTGTTCAGATATGTACTAGTATGTTACTTTTTGTATGCTATGTCTCTGAGGCATTACAAACATTGAAGGCTTTTTTTTTTTATTATTATAATTTTTATGTTTAGACTTTGATATTCGTAAAACAAGGCATTGGTAGAGCATCCCCAATTAATTGCATGAGATTCCACCAAGTTGTACTGAACTGAATAAT

Coding sequences of Glyma17g09030

Limit To All Plant Sequences

>Glyma17g09030.2   sequence type=CDS   gene model=Glyma17g09030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCCATTCGGTGCAGAGGGATGTCACAGCAGTGAATCTGGATGGACCATGTATATTGGGTCCCCCATAGATGATGCTGGACATAGTAGTGACAACGACGACAACAACAAGAAAGGTACTCAAGCTCATCCACAAGATGATGATGATGATGATGATGAAAGTGATGATTCTATGGCTTCTGATGCGTCTTCTGGGCCAAGTCATCATCATGGCTTTGCGGATTTCCGCCGAGATGCCGAAGAAGAAAATGATGAAAACAAGTATTGCTTAGAGAAGAAAGCAGGTAAAACTCAACACAAGCAAATGGAAGGGAAAAAGGTGGAAAAGAATGGGATGTTAATAGTTGATAGCAAAGATAAGTCTCCAGTTCAGGGTTGTGGAAAGGTGAGAAAAAATTACTTTGTGGGAAAAAGGAAATAG

>Glyma17g09030.3   sequence type=CDS   gene model=Glyma17g09030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCCATTCGGTGCAGAGGGATGTCACAGCAGTGAATCTGGATGGACCATGTATATTGGGTCCCCCATAGATGATGCTGGACATAGTAGTGACAACGACGACAACAACAAGAAAGGTACTCAAGCTCATCCACAAGATGATGATGATGATGATGATGAAAGTGATGATTCTATGGCTTCTGATGCGTCTTCTGGGCCAAGTCATCATCATGGCTTTGCGGATTTCCGCCGAGATGCCGAAGAAGAAAATGATGAAAACAAGTATTGCTTAGAGAAGAAAGCAGGTAAAACTCAACACAAGCAAATGGAAGGGAAAAAGGTGGAAAAGAATGGGATGTTAATAGTTGATAGCAAAGATAAGTCTCCAGTTCAGGGTTGTGGAAAGGTGAGAAAAAATTACTTTGTGGGAAAAAGGAAATAG

>Glyma17g09030.4   sequence type=CDS   gene model=Glyma17g09030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCCATTCGGTGCAGAGGGATGTCACAGCAGTGAATCTGGATGGACCATGTATATTGGGTCCCCCATAGATGATGCTGGACATAGTAGTGACAACGACGACAACAACAAGAAAGGTACTCAAGCTCATCCACAAGATGATGATGATGATGATGATGAAAGTGATGATTCTATGGCTTCTGATGCGTCTTCTGGGCCAAGTCATCATCATGGCTTTGCGGATTTCCGCCGAGATGCCGAAGAAGAAAATGATGAAAACAAGTATTGCTTAGAGAAGAAAGCAGGTAAAACTCAACACAAGCAAATGGAAGGGAAAAAGGTGGAAAAGAATGGGATGTTAATAGTTGATAGCAAAGATAAGTCTCCAGTTCAGGGTTGTGGAAAGGTGAGAAAAAATTACTTTGTGGGAAAAAGGAAATAG

Predicted protein sequences of Glyma17g09030

Limit To All Plant Sequences

>Glyma17g09030.2   sequence type=predicted peptide   gene model=Glyma17g09030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPFGAEGCHSSESGWTMYIGSPIDDAGHSSDNDDNNKKGTQAHPQDDDDDDDESDDSMASDASSGPSHHHGFADFRRDAEEENDENKYCLEKKAGKTQHKQMEGKKVEKNGMLIVDSKDKSPVQGCGKVRKNYFVGKRK*

>Glyma17g09030.3   sequence type=predicted peptide   gene model=Glyma17g09030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPFGAEGCHSSESGWTMYIGSPIDDAGHSSDNDDNNKKGTQAHPQDDDDDDDESDDSMASDASSGPSHHHGFADFRRDAEEENDENKYCLEKKAGKTQHKQMEGKKVEKNGMLIVDSKDKSPVQGCGKVRKNYFVGKRK*

>Glyma17g09030.4   sequence type=predicted peptide   gene model=Glyma17g09030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPFGAEGCHSSESGWTMYIGSPIDDAGHSSDNDDNNKKGTQAHPQDDDDDDDESDDSMASDASSGPSHHHGFADFRRDAEEENDENKYCLEKKAGKTQHKQMEGKKVEKNGMLIVDSKDKSPVQGCGKVRKNYFVGKRK*

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