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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G73990 | AT | Annotation by Michelle Graham. TAIR10: signal peptide peptidase | chr1:27824465-27828807 FORWARD LENGTH=677 | SoyBase | E_val: 0 | ISS |
| GO:0006465 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal peptide processing | SoyBase | N/A | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0009642 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to light intensity | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0004252 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity | SoyBase | N/A | ISS |
| GO:0008233 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peptidase activity | SoyBase | N/A | ISS |
| PTHR10381 | Panther | PROTEASE FAMILY S14 CLPP PROTEASE | JGI | ISS | |
| PTHR10381:SF2 | Panther | CLPP PROTEASE RELATED | JGI | ISS | |
| PF01343 | PFAM | Peptidase family S49 | JGI | ISS | |
| UniRef100_G7ISZ4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protease n=1 Tax=Medicago truncatula RepID=G7ISZ4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MTA2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTA2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g09020 not represented in the dataset |
Glyma17g09020 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g07540 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g082700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g09020.3 sequence type=transcript gene model=Glyma17g09020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTATTTTTCTGCGTTAAAATCTCTGGAAACTCGTTTTAGCATTACCTTCTCAGACAAACAGGCAAATTTCTCGGATCTTTTTCCCTCCCACGTTTTGCCGCGGTGATGCGGCAAACTCACGGAAATATGTCACGCACTCGTATCGCCATTCAGCGCTTCCGCCACACCTACACCGCGTTATCATCATCAGCTGCACTTACTCGCTCCCAATTCCAATGCTCTCAACAACATCTCACGCGCGCACCCCTCCTCTTCCACGCTCCTCGTCATTATTCATCTTCCCCCAAACAAGACTATCCCACCGGAGACTTTGATTTCAAGCCCATCACAGGCTGGAAAAAGTTCACCGTCAACCTCAAGATGCTAACGGCTTTCCCCTGGGAGCGTCTCCGATACGGCACCCTGTTAACAATCAAGTTGCGCGGCCAGATATCGGATCAGCTCAATAGTAGGTTCTCCCCGGGATTATCTCTGCCTCAAATCTGTGATAATTTCTTCAAGGCAACTTATGACCCTCGAATTTCCGGCATCTATCTCCATATTGATATTTTAAATTGTGGTTGGGCAAAGGTCGAAGAAATTCGAAGACATATCTTGAATTTCAGAAAATCAGGAAAATTTGTTGTGGCTTACGTCCCTTCATGTCGAGAAAAAGAATATTATATTGCGTGTGCCTGTGAAGAAATATATGCCCCTCCAAGTGCATATTTTTCTTTGTTTGGATTGACTGTTCAAGCCCCATTTCTCAGAGGTGTTTTAGAGAATCTTGGAATTGAACCAGAAGTGGAAAGGATTGGCAAATACAAAAGTGTAGGAGATCAACTTACCCGTAAAACCATGTCTGAAGATCATCATGAGATGCTTACTGCGTTGCTTGATAATATCTATACTAATTGGCTGGACAAAGTCTCTTCTGCTAGAGGAAAGAAAAGGGAAGATATTGAGAACTTCATAAATAAAGGTGTCTATCAAGTAGAGAGACTTAAAGAAGAGGGCTTCTTAACAGACATAATCTATGATGACGAGGTTATCACTCGGTTAAAGGAGAGACTTCAAGTTAAAACTGATAAAAATCTTCCTATGGTTGATAACAGAAAATACTCTGGAGTTAGGAAATCGACTCTTGGACTATCAGGTGGCAAAGAATTAATAGCCATCATCCGAGCTTCAGGGAGTATTCGCCGTATCGAGAGTTCATTAAGTACCCGTAGCTCTGGTATCATTGGAGAGAAGTTAATTGAGAAGATACGCAAAGTTAGAGAGTCAAATAAATACAAGGCTGCTATTATCCGAATTGACAGTCCAGGAGGGGATGCTCTTGCTTCTGATTTGATGTGGAGAGAAATCAGGCTTCTGGCTGCCTCAAAACCAGTCATTGCTTCAATGTCTGATGTGGCAGCAAGTGGAGGGTACTACATGGCAATGGGAGCAGGAGTTATTGTTGCAGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGGAAAATTTAACCTTGGGAAACTTTATGAGAAGATTGGCTTCAACAAAGAAATCATATCAAGGGGTAGATATGCTGAGCTCCGTGCAGCTGAACAGCGTTCTTTAAGACGAGATGAAGCAGAGCTATTTTCCAAGTCTGCGCAGCATGCTTATAAACAATTTCGAGATAAGGCAGCTTTATCCAGATCTATGACTGTAGACAAGATGGAAGAGGTTGCACAAGGAAGGGTTTGGACTGGTAAGGACGCAGCTTCTCACGGTTTGGTTGATGCTATTGGTGGCCTTTCTCGAGCTGTTGCCATAGCAAAATTGAAGGCCAATATACCGCTGGACAGACAGGTTACTGTGTTGGAGCTCTCGAGACCGAGCCCTTCTCTACCCGAGATTTTACGTGGTCTAGGGAAAATTTAAGCATGGGAAACTTTATGAGATGATTGGCTTCAATCAAGAAGTCATATGAAGGGGTAGATATGCTGAGCTCCATAAAAGCTGATCAGCGTTCTTTTAGGCCAGATATAACTTGTGCTTGAGCTTGAGCTATGCCAGGTTAATGTTGCGGAGCTCTCGAGACCCAGCACTTTTCTACGCGAGATTTTAAGTCGTCGAGGTAATTCTCTCGTTGGAGTAGACACAACTTTAAATGAATTACTAGAGGACTTTAAATTTTCCGATGGAGTCTGCACCACTGAAACCAACAACAGCTTCAAGCCAAAAGTCTCCCCATCAGATTCAAATTCAACACTCAAATGCTTATAAGTGCTCTTAGAGCACATATATGTGTAACTCTACTTCATAACATGGTACTCAAAATGGCTATGTTCTGGAACTTGCAACTGGTCGAGTCAAAGGCTCGGCTAGGAAGTCATTAGGGATGAGGTGAGGTTGCTCAGCACTTCCAGAAGGAGCCAACAAGTCAGAGAGTGCTACCTGAAGAGAGGAAACATTCTCTTTTAGTTGAGTATTCTGTTGGTGGATTTGTTGGTAAAATTCCAACAAATAAATGATCTTTTGGGACAGTTGATGGTTTAATGTCTGTAGATGATCCACATGATACTGCAGGACTTCAAATTGTTGCTTCTTTCACATCCGCGACCTGCGAGCAGATTCTCTGTTTGAGAACATCCTCTTCTTTCTGTCATCAAGGAGAGCCTTTGCTTCATCAGAATTGTTGTTGTTACTGTTTGATGATGTGTTGGGAGAGGGTTTATGGAGTGGGACTTGAATTGGGTTGTTGCTGTTGCTAGGAAGGTTTTGGGAGCAGTAAAATGGAATATGATGCAAACCATGAGGTGGATCCATATGGTTCAAAGTATGGCTTTCACCAGCTTCCATGTTCAGGAGGTTTGTTGAGGTAAAGATAGGTTTTTGGGTTGGAGAATGATAGGGAAGGCACTGTCTTAAGGAAGCATAATAAGGTGCCACATGGAGTTCATCATCTTCATTGCATTCCATTTCTCAACTTTTCATGTGAGTATGAGAGAGCTGGAACTAATGGACTTACAGGTTTTTAATAGATTGGATAGTTAATGCAGATAGAGCACAAGCAGATAAGGGAGTTTCTTGGCATTTAAGCTGGCTTATGTATTTATGGATGTGTTAAGTTCCGTAGATCATCTTGATTCGGCATACTAGGAGAGTTAAGAATACAATGTGATCAAGATTAATAACATATCATGGTTCGATAACCTTTTACTCGGCAAAAATGGTGGGAAATAATTGACATAGAGACAAAAGAAATTTGAGAGACAAGGTTCTTTAATAGCAGGGAAGGCAATGGCATTGACTTTTTGACTAAGTATGCCTGAAACATGATAGAAAGCAAGAAATTCAGTGATTCTCTATCTTGGATAAGAGCCAGAGGATTAAATCATGCCATATAAGCGCATAGCCGCACACTCAATTCAGTGAAATATTGGATTAAATCTGCTGTTCTTTTTTCTATTTCTAGTCTTAATTATTTAATCTACTCAAGAACAAATGGCAATGCGCGTTAACTTTAGCTACATCTATTTCAATCTAAATTTAAAAACTGAAGAAAAGTTCACTTATCTTAGTGAATTGTGATTGAATAACTGTATAAATTT
>Glyma17g09020.1 sequence type=CDS gene model=Glyma17g09020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGGCAAACTCACGGAAATATGTCACGCACTCGTATCGCCATTCAGCGCTTCCGCCACACCTACACCGCGTTATCATCATCAGCTGCACTTACTCGCTCCCAATTCCAATGCTCTCAACAACATCTCACGCGCGCACCCCTCCTCTTCCACGCTCCTCGTCATTATTCATCTTCCCCCAAACAAGACTATCCCACCGGAGACTTTGATTTCAAGCCCATCACAGGCTGGAAAAAGTTCACCGTCAACCTCAAGATGCTAACGGCTTTCCCCTGGGAGCGTCTCCGATACGGCACCCTGTTAACAATCAAGTTGCGCGGCCAGATATCGGATCAGCTCAATAGTAGGTTCTCCCCGGGATTATCTCTGCCTCAAATCTGTGATAATTTCTTCAAGGCAACTTATGACCCTCGAATTTCCGGCATCTATCTCCATATTGATATTTTAAATTGTGGTTGGGCAAAGGTCGAAGAAATTCGAAGACATATCTTGAATTTCAGAAAATCAGGAAAATTTGTTGTGGCTTACGTCCCTTCATGTCGAGAAAAAGAATATTATATTGCGTGTGCCTGTGAAGAAATATATGCCCCTCCAAGTGCATATTTTTCTTTGTTTGGATTGACTGTTCAAGCCCCATTTCTCAGAGGTGTTTTAGAGAATCTTGGAATTGAACCAGAAGTGGAAAGGATTGGCAAATACAAAAGTGTAGGAGATCAACTTACCCGTAAAACCATGTCTGAAGATCATCATGAGATGCTTACTGCGTTGCTTGATAATATCTATACTAATTGGCTGGACAAAGTCTCTTCTGCTAGAGGAAAGAAAAGGGAAGATATTGAGAACTTCATAAATAAAGGTGTCTATCAAGTAGAGAGACTTAAAGAAGAGGGCTTCTTAACAGACATAATCTATGATGACGAGGTTATCACTCGGTTAAAGGAGAGACTTCAAGTTAAAACTGATAAAAATCTTCCTATGGTTGATAACAGAAAATACTCTGGAGTTAGGAAATCGACTCTTGGACTATCAGGTGGCAAAGAATTAATAGCCATCATCCGAGCTTCAGGGAGTATTCGCCGTATCGAGAGTTCATTAAGTACCCGTAGCTCTGGTATCATTGGAGAGAAGTTAATTGAGAAGATACGCAAAGTTAGAGAGTCAAATAAATACAAGGCTGCTATTATCCGAATTGACAGTCCAGGAGGGGATGCTCTTGCTTCTGATTTGATGTGGAGAGAAATCAGGCTTCTGGCTGCCTCAAAACCAGTCATTGCTTCAATGTCTGATGTGGCAGCAAGTGGAGGGTACTACATGGCAATGGGAGCAGGAGTTATTGTTGCAGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGGAAAATTTAACCTTGGGAAACTTTATGAGAAGATTGGCTTCAACAAAGAAATCATATCAAGGGGTAGATATGCTGAGCTCCGTGCAGCTGAACAGCGTTCTTTAAGACGAGATGAAGCAGAGCTATTTTCCAAGTCTGCGCAGCATGCTTATAAACAATTTCGAGATAAGGCAGCTTTATCCAGATCTATGACTGTAGACAAGATGGAAGAGGTTGCACAAGGAAGGGTTTGGACTGGTAAGGACGCAGCTTCTCACGGTTTGGTTGATGCTATTGGTGGCCTTTCTCGAGCTGTTGCCATAGCAAAATTGAAGGCCAATATACCGCTGGACAGACAGGTTACTGTGTTGGAGCTCTCGAGACCGAGCCCTTCTCTACCCGAGATTTTACGTGGTCTAGGTAATTCTCTCGTTGGAGTAGACAGAACTTTCAATGAATTACTACAGGACTTGACATTTTCCCATGAAGTCCAAGCACGAATGGACGGAATCATGTTTGAGAAATTGGAAGGATATCCATATGCCAACCCCATTTTGGCATTGATAAAAGATTATCTTAGTTCCCTGTAG >Glyma17g09020.3 sequence type=CDS gene model=Glyma17g09020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGGCAAACTCACGGAAATATGTCACGCACTCGTATCGCCATTCAGCGCTTCCGCCACACCTACACCGCGTTATCATCATCAGCTGCACTTACTCGCTCCCAATTCCAATGCTCTCAACAACATCTCACGCGCGCACCCCTCCTCTTCCACGCTCCTCGTCATTATTCATCTTCCCCCAAACAAGACTATCCCACCGGAGACTTTGATTTCAAGCCCATCACAGGCTGGAAAAAGTTCACCGTCAACCTCAAGATGCTAACGGCTTTCCCCTGGGAGCGTCTCCGATACGGCACCCTGTTAACAATCAAGTTGCGCGGCCAGATATCGGATCAGCTCAATAGTAGGTTCTCCCCGGGATTATCTCTGCCTCAAATCTGTGATAATTTCTTCAAGGCAACTTATGACCCTCGAATTTCCGGCATCTATCTCCATATTGATATTTTAAATTGTGGTTGGGCAAAGGTCGAAGAAATTCGAAGACATATCTTGAATTTCAGAAAATCAGGAAAATTTGTTGTGGCTTACGTCCCTTCATGTCGAGAAAAAGAATATTATATTGCGTGTGCCTGTGAAGAAATATATGCCCCTCCAAGTGCATATTTTTCTTTGTTTGGATTGACTGTTCAAGCCCCATTTCTCAGAGGTGTTTTAGAGAATCTTGGAATTGAACCAGAAGTGGAAAGGATTGGCAAATACAAAAGTGTAGGAGATCAACTTACCCGTAAAACCATGTCTGAAGATCATCATGAGATGCTTACTGCGTTGCTTGATAATATCTATACTAATTGGCTGGACAAAGTCTCTTCTGCTAGAGGAAAGAAAAGGGAAGATATTGAGAACTTCATAAATAAAGGTGTCTATCAAGTAGAGAGACTTAAAGAAGAGGGCTTCTTAACAGACATAATCTATGATGACGAGGTTATCACTCGGTTAAAGGAGAGACTTCAAGTTAAAACTGATAAAAATCTTCCTATGGTTGATAACAGAAAATACTCTGGAGTTAGGAAATCGACTCTTGGACTATCAGGTGGCAAAGAATTAATAGCCATCATCCGAGCTTCAGGGAGTATTCGCCGTATCGAGAGTTCATTAAGTACCCGTAGCTCTGGTATCATTGGAGAGAAGTTAATTGAGAAGATACGCAAAGTTAGAGAGTCAAATAAATACAAGGCTGCTATTATCCGAATTGACAGTCCAGGAGGGGATGCTCTTGCTTCTGATTTGATGTGGAGAGAAATCAGGCTTCTGGCTGCCTCAAAACCAGTCATTGCTTCAATGTCTGATGTGGCAGCAAGTGGAGGGTACTACATGGCAATGGGAGCAGGAGTTATTGTTGCAGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGGAAAATTTAACCTTGGGAAACTTTATGAGAAGATTGGCTTCAACAAAGAAATCATATCAAGGGGTAGATATGCTGAGCTCCGTGCAGCTGAACAGCGTTCTTTAAGACGAGATGAAGCAGAGCTATTTTCCAAGTCTGCGCAGCATGCTTATAAACAATTTCGAGATAAGGCAGCTTTATCCAGATCTATGACTGTAGACAAGATGGAAGAGGTTGCACAAGGAAGGGTTTGGACTGGTAAGGACGCAGCTTCTCACGGTTTGGTTGATGCTATTGGTGGCCTTTCTCGAGCTGTTGCCATAGCAAAATTGAAGGCCAATATACCGCTGGACAGACAGGTTACTGTGTTGGAGCTCTCGAGACCGAGCCCTTCTCTACCCGAGATTTTACGTGGTCTAGGGAAAATTTAA
>Glyma17g09020.1 sequence type=predicted peptide gene model=Glyma17g09020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRQTHGNMSRTRIAIQRFRHTYTALSSSAALTRSQFQCSQQHLTRAPLLFHAPRHYSSSPKQDYPTGDFDFKPITGWKKFTVNLKMLTAFPWERLRYGTLLTIKLRGQISDQLNSRFSPGLSLPQICDNFFKATYDPRISGIYLHIDILNCGWAKVEEIRRHILNFRKSGKFVVAYVPSCREKEYYIACACEEIYAPPSAYFSLFGLTVQAPFLRGVLENLGIEPEVERIGKYKSVGDQLTRKTMSEDHHEMLTALLDNIYTNWLDKVSSARGKKREDIENFINKGVYQVERLKEEGFLTDIIYDDEVITRLKERLQVKTDKNLPMVDNRKYSGVRKSTLGLSGGKELIAIIRASGSIRRIESSLSTRSSGIIGEKLIEKIRKVRESNKYKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGAGVIVAESLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGRYAELRAAEQRSLRRDEAELFSKSAQHAYKQFRDKAALSRSMTVDKMEEVAQGRVWTGKDAASHGLVDAIGGLSRAVAIAKLKANIPLDRQVTVLELSRPSPSLPEILRGLGNSLVGVDRTFNELLQDLTFSHEVQARMDGIMFEKLEGYPYANPILALIKDYLSSL* >Glyma17g09020.3 sequence type=predicted peptide gene model=Glyma17g09020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRQTHGNMSRTRIAIQRFRHTYTALSSSAALTRSQFQCSQQHLTRAPLLFHAPRHYSSSPKQDYPTGDFDFKPITGWKKFTVNLKMLTAFPWERLRYGTLLTIKLRGQISDQLNSRFSPGLSLPQICDNFFKATYDPRISGIYLHIDILNCGWAKVEEIRRHILNFRKSGKFVVAYVPSCREKEYYIACACEEIYAPPSAYFSLFGLTVQAPFLRGVLENLGIEPEVERIGKYKSVGDQLTRKTMSEDHHEMLTALLDNIYTNWLDKVSSARGKKREDIENFINKGVYQVERLKEEGFLTDIIYDDEVITRLKERLQVKTDKNLPMVDNRKYSGVRKSTLGLSGGKELIAIIRASGSIRRIESSLSTRSSGIIGEKLIEKIRKVRESNKYKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGAGVIVAESLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGRYAELRAAEQRSLRRDEAELFSKSAQHAYKQFRDKAALSRSMTVDKMEEVAQGRVWTGKDAASHGLVDAIGGLSRAVAIAKLKANIPLDRQVTVLELSRPSPSLPEILRGLGKI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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