Glyma17g08970 - SoyBase

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Report for Sequence Feature Glyma17g08970

Feature Type:	gene_model
Chromosome:	Gm17
Start:	6639801
stop:	6643777
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g08970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15740	AT	Annotation by Michelle Graham. TAIR10: O-fucosyltransferase family protein \| chr5:5134788-5136956 REVERSE LENGTH=508	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
PF10250	PFAM	GDP-fucose protein O-fucosyltransferase	JGI		ISS
UniRef100_G7IT24	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP synthase subunit a chloroplastic n=1 Tax=Medicago truncatula RepID=G7IT24_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MT97	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MT97_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g08970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g08970

Paralog	Evidence	Comments
Glyma05g07480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g08970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g082000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g08970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g08970

Limit To All Plant Sequences

>Glyma17g08970.2   sequence type=transcript   gene model=Glyma17g08970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCCTAGTGACTTTCAAGACATATTTGATGTGGATCATTTTATCGCGTCCTTGAGAGATGAAGTGCGGATATTGAAAGAGTTGCCTCCCAGACTCAAGATGAAAGTGGAACGCGGCTTTCTTTACACCATGCCACCTATTAGTTGGTCTGATATATCTTACTATAAGGACCAGATTCTACCCTTGATACAAAAGTACAAAGTTGTTCACTTAAATAGAACTGATGCTCGGTTGGCCAATAATGGTCAACCGATAGAGATTCAGAAGCTGCGTTGCCGGGTCAATTTTAGTGGTCTGAGATTTACTTCCCAGATAGAGGAGTTGGGCAGAAAGGTGATCAGGCTTCTAAGGCAAAAAGGTCAATTTCTTGTGCTCCACCTTAGGTATGAGATGGACATGTTGGCATTTTCTGGCTGCACTCAAGGTTGTAACAGTGATGAGGTGGATGAATTGACAAGAATGAGATATGCTTATCCTTGGTGGAAAGAAAAAATAATTAATTCTGATTTGAAAAGAAAAGATGGTTTATGCCCTCTAACACCTGAGGAGACCGCCCTTACACTTAAGGCTCTTGACATTGATCAGAACATTCAAATCTACATTGCAGCAGGGGAAATATATGGAGGGGAAAGGAGAATGGCAGGTCTTGCAAAGGAGTACCCAAAATTGGTCAGGAAGGAAACGCTGTTGGAGCCATCTGACCTTCGTTTCTTCCAAAATCATTCATCCCAGATGGCAGCATTGGATTATCTTGTCTCGTTAGAGAGTGATATTTTTGTTCCCACATATGATGGAAATATGGCCAAAGTGGTTGAGGGCCACCGCAGATATCTTGGGTTCAAGAGAACGATTTTATTGAACAGAAAGCTCCTAGTTGAATTGATAGATCAGTACAATAATGGAGTGCTAAACTGGGATGAATTCTCTTCAGCGGTGAAGGAAGCTCATGCCGATCGCATGGGTAGCCAAACAAAGAGGTTTGTAATCCCTGAGAGGCCAAAAGAAGAGGATTATTTCTATGCCAACCCACAGGAGTGTTTGGAACAATCAGCAGATGAACCGTTGGCGTTGAGTAGTAGTACGTGAGTGAGTGAGTAATATGTTGGGAAATAGTGGAATTTACTTGTGCCATCATCTCCTGGTGCACTTGGTTTTTCTACCACAGATAGTTTTTCCACGCAGTTTTAGCGAATCAACAAGGTAGTCAAAAGGTGACCCATAAAGAAAAGTGAAGTGAAGTGGGTAAAAACTCTAGTCAAGCAAAAACAGCCAGGGGATACTTTATATTTTATATATGCAAAATAATCAATCCATCACATTCATGTATAGAAAGCTACCCTGCCATTACAGGGTGAGAGCAGCAGTTCAAACAACATGTAGACGGAGGAATTTCTTATACAAATTTGGATTTTACTGGAAACTGCCCTTCGTGGAAAGCTTCATTCATTGGTATTTGCCTCACTTTTTTTCTTTCTTTCTTGGATATAAATATATAATATCCCCCCTTCCTTTTTTCTTAAATTGGCCTCCATCATTGTGATTTTCTGGATTATTTATACACTAAAGAATTTGTTTGTTCGTGTATTAGTTAATGCCTCCTAATTTCATTTTCCACTTTGGTCCGTTTCGGGAATGCTAGGTTGGACGAGCCTTTTGTATCATCTTCTCATATTTATATTTGACAGTGAGTGTCATTTCTAATTAATTCATGAAAACTTATCCATCAAACCATAATAAAGTAGTAGTTGAAGACCAAATAATACAAAATCGGATAGGAACTCCTTGTCCTTATGGGTGTAGCATGTAGTGTCATGTTTATAGATAAGATTATAATTTGGTAAGCTGGAGTTAGGGTAGGCTCTTTCTCTTTGGAGCCTATGTTCCCGAGGGAGACATGCTAACAAATTTGTACATTGAATAAAAATCAGTGGTCAATTGTGCCAAACAAAGAAAGCCACTAGACAAAAAAAAGTGGACCACTGTGATTTTTGGTTTATTCATTGAAGATAAATTATTTGGGTCATGTGATTGTTGGAGGAATAT

Coding sequences of Glyma17g08970

Limit To All Plant Sequences

>Glyma17g08970.1   sequence type=CDS   gene model=Glyma17g08970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGCAGGGCAGAGTGGGAAGGTTTGATGGGTCTGAAGAAGTGGGAGAGTAAGGTTCAGAAAGTGGGAATGGGTGTGTTAGGTTCGGGGGGTTCAGGTTCAGGTTCGGGTTCGGGTTCGTCGCGGTCGAGAATGAAGATGTGGATGATACGGGCAACCACATCGGTGTTATTGTGGACCTGCATCGTTCAGTTAACGGCGTTGGGTGACATGTGGGGGCCGAGAGTTTTGAAAGGTTGGCCTTCTTGTTTCACTCACGAGTCTGCCGTTAGAGCAATGGATGTCGAGTTACCGTCACAGCGTCCACCTCTTCTCCCTCCCAAGAGGGTTTATAAAAACAATGGATACCTTATGGTTTCGTGCAATGGAGGACTCAACCAAATGAGAGCTGCGATATGTGACATGGTGGCTATTGCCAGATATTTAAATATTTGTTGTTTTAGTGATCCCAGGTTGAAGAAATTTCCAGTGATGATTTCTGACTTTCAAGACATATTTGATGTGGATCATTTTATCGCGTCCTTGAGAGATGAAGTGCGGATATTGAAAGAGTTGCCTCCCAGACTCAAGATGAAAGTGGAACGCGGCTTTCTTTACACCATGCCACCTATTAGTTGGTCTGATATATCTTACTATAAGGACCAGATTCTACCCTTGATACAAAAGTACAAAGTTGTTCACTTAAATAGAACTGATGCTCGGTTGGCCAATAATGGTCAACCGATAGAGATTCAGAAGCTGCGTTGCCGGGTCAATTTTAGTGGTCTGAGATTTACTTCCCAGATAGAGGAGTTGGGCAGAAAGGTGATCAGGCTTCTAAGGCAAAAAGGTCAATTTCTTGTGCTCCACCTTAGGTATGAGATGGACATGTTGGCATTTTCTGGCTGCACTCAAGGTTGTAACAGTGATGAGGTGGATGAATTGACAAGAATGAGATATGCTTATCCTTGGTGGAAAGAAAAAATAATTAATTCTGATTTGAAAAGAAAAGATGGTTTATGCCCTCTAACACCTGAGGAGACCGCCCTTACACTTAAGGCTCTTGACATTGATCAGAACATTCAAATCTACATTGCAGCAGGGGAAATATATGGAGGGGAAAGGAGAATGGCAGGTCTTGCAAAGGAGTACCCAAAATTGGTCAGGAAGGAAACGCTGTTGGAGCCATCTGACCTTCGTTTCTTCCAAAATCATTCATCCCAGATGGCAGCATTGGATTATCTTGTCTCGTTAGAGAGTGATATTTTTGTTCCCACATATGATGGAAATATGGCCAAAGTGGTTGAGGGCCACCGCAGATATCTTGGGTTCAAGAGAACGATTTTATTGAACAGAAAGCTCCTAGTTGAATTGATAGATCAGTACAATAATGGAGTGCTAAACTGGGATGAATTCTCTTCAGCGGTGAAGGAAGCTCATGCCGATCGCATGGGTAGCCAAACAAAGAGGTTTGTAATCCCTGAGAGGCCAAAAGAAGAGGATTATTTCTATGCCAACCCACAGGAGTGTTTGGAACAATCAGCAGATGAACCGTTGGCGTTGAGTAGTAGTACGTGA

>Glyma17g08970.2   sequence type=CDS   gene model=Glyma17g08970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGTGGAACGCGGCTTTCTTTACACCATGCCACCTATTAGTTGGTCTGATATATCTTACTATAAGGACCAGATTCTACCCTTGATACAAAAGTACAAAGTTGTTCACTTAAATAGAACTGATGCTCGGTTGGCCAATAATGGTCAACCGATAGAGATTCAGAAGCTGCGTTGCCGGGTCAATTTTAGTGGTCTGAGATTTACTTCCCAGATAGAGGAGTTGGGCAGAAAGGTGATCAGGCTTCTAAGGCAAAAAGGTCAATTTCTTGTGCTCCACCTTAGGTATGAGATGGACATGTTGGCATTTTCTGGCTGCACTCAAGGTTGTAACAGTGATGAGGTGGATGAATTGACAAGAATGAGATATGCTTATCCTTGGTGGAAAGAAAAAATAATTAATTCTGATTTGAAAAGAAAAGATGGTTTATGCCCTCTAACACCTGAGGAGACCGCCCTTACACTTAAGGCTCTTGACATTGATCAGAACATTCAAATCTACATTGCAGCAGGGGAAATATATGGAGGGGAAAGGAGAATGGCAGGTCTTGCAAAGGAGTACCCAAAATTGGTCAGGAAGGAAACGCTGTTGGAGCCATCTGACCTTCGTTTCTTCCAAAATCATTCATCCCAGATGGCAGCATTGGATTATCTTGTCTCGTTAGAGAGTGATATTTTTGTTCCCACATATGATGGAAATATGGCCAAAGTGGTTGAGGGCCACCGCAGATATCTTGGGTTCAAGAGAACGATTTTATTGAACAGAAAGCTCCTAGTTGAATTGATAGATCAGTACAATAATGGAGTGCTAAACTGGGATGAATTCTCTTCAGCGGTGAAGGAAGCTCATGCCGATCGCATGGGTAGCCAAACAAAGAGGTTTGTAATCCCTGAGAGGCCAAAAGAAGAGGATTATTTCTATGCCAACCCACAGGAGTGTTTGGAACAATCAGCAGATGAACCGTTGGCGTTGAGTAGTAGTACGTGA

Predicted protein sequences of Glyma17g08970

Limit To All Plant Sequences

>Glyma17g08970.1   sequence type=predicted peptide   gene model=Glyma17g08970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCRAEWEGLMGLKKWESKVQKVGMGVLGSGGSGSGSGSGSSRSRMKMWMIRATTSVLLWTCIVQLTALGDMWGPRVLKGWPSCFTHESAVRAMDVELPSQRPPLLPPKRVYKNNGYLMVSCNGGLNQMRAAICDMVAIARYLNICCFSDPRLKKFPVMISDFQDIFDVDHFIASLRDEVRILKELPPRLKMKVERGFLYTMPPISWSDISYYKDQILPLIQKYKVVHLNRTDARLANNGQPIEIQKLRCRVNFSGLRFTSQIEELGRKVIRLLRQKGQFLVLHLRYEMDMLAFSGCTQGCNSDEVDELTRMRYAYPWWKEKIINSDLKRKDGLCPLTPEETALTLKALDIDQNIQIYIAAGEIYGGERRMAGLAKEYPKLVRKETLLEPSDLRFFQNHSSQMAALDYLVSLESDIFVPTYDGNMAKVVEGHRRYLGFKRTILLNRKLLVELIDQYNNGVLNWDEFSSAVKEAHADRMGSQTKRFVIPERPKEEDYFYANPQECLEQSADEPLALSSST*

>Glyma17g08970.2   sequence type=predicted peptide   gene model=Glyma17g08970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKVERGFLYTMPPISWSDISYYKDQILPLIQKYKVVHLNRTDARLANNGQPIEIQKLRCRVNFSGLRFTSQIEELGRKVIRLLRQKGQFLVLHLRYEMDMLAFSGCTQGCNSDEVDELTRMRYAYPWWKEKIINSDLKRKDGLCPLTPEETALTLKALDIDQNIQIYIAAGEIYGGERRMAGLAKEYPKLVRKETLLEPSDLRFFQNHSSQMAALDYLVSLESDIFVPTYDGNMAKVVEGHRRYLGFKRTILLNRKLLVELIDQYNNGVLNWDEFSSAVKEAHADRMGSQTKRFVIPERPKEEDYFYANPQECLEQSADEPLALSSST*

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