SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G08120 | AT | Annotation by Michelle Graham. TAIR10: movement protein binding protein 2C | chr5:2600743-2602678 REVERSE LENGTH=326 | SoyBase | E_val: 2.00E-94 | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0010375 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex patterning | SoyBase | N/A | ISS |
| GO:0010497 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plasmodesmata-mediated intercellular transport | SoyBase | N/A | ISS |
| GO:0043622 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cortical microtubule organization | SoyBase | N/A | ISS |
| GO:0051607 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to virus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0015630 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: microtubule cytoskeleton | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| UniRef100_I1MT94 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MT94_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9LEZ4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Movement protein binding protein 2C n=2 Tax=Arabidopsis thaliana RepID=Q9LEZ4_ARATH | SoyBase | E_val: 8.00E-92 | ISS |
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Glyma17g08930 not represented in the dataset |
Glyma17g08930 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g07440 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g081700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g08930.3 sequence type=transcript gene model=Glyma17g08930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGGGGTAGATCGGTCATTTCAATTTTAATATCCGTTGTTTTGTCTGGAAAGGAAAGGAGAGTGAGGCATTTTCAAAGTGCAGTCTCTCAGAGTCATTTCTCTCTCCGGCGAGAAAGAAAAATGCAGCATTTCATGGATTTGCAAGCGAATTCGGAGTTGGGTGAGTCGAATTCATGGCTTTCAGTGAAAGAGCAGTCCGGTGCGGCACCCAACACCAATTTGGATCGCGTCCTCTTCAACGACCTCGTCGAGATTGTCCCTCTCGTTCAGTCACTCATCGATCGTAAAGCAAGCCGTTCATTCACGCGGCGTGGTTCCATGATCTACACCAAGACACCCACCAGAGAATCATTGTCCAAAAGAGTAACAGATTCAAAAAGTAGGAATGTTGCCCCATCTATTCCTGCCAAAAAGAAAAGGGACCACGGAGAAAAAGAACAAGGAAAAAATGGCAGCAATGATGCTGATAACTATTCCATGTTTTCTTCAAGAACTTTGGCTTCAGAAAAGGACATAGAAGAGTTAGGCATGTTGAAGGAGCAGGTAGAGGAACTTCAGAGGAAATTGTTGGAGAAAGATGAACTTTTAAAGTCAGCAGAAAACACAAGAGACCAGATGAATGTTTTCAATGCAAAACTTGATGAACTGAAACACCAGGCTTCAGAAAAGGAATCTTTACTGAAGTATACTCAACAACAGCTCTCCGATGCTAAGATTAAGCTTGCAGACAAGCAAGCTGCTCTTGAAAAGATACAATGGGAAGCGATGACATCCAACAAGAAAGTAGATAAACTCCAAGATGAGCTAGGTTCCATGCAAGCAGATATTACATCATTCACGTTATTACTGGAAGGATTGTCAAAAACTGACACTGCTAAATACACTGATGATTATGACGTCAAGCCTTATGATTTCAGTCACCTGCCTAGTATTATTGTATCCGTACTTCCCGTAAGGTTGTAACTTCTTTTCTCTTAACAAGAGGGTATTTGGTAAAGAACTGCATCATTGAATGGATGATTTGGACGAGATGGAATTGCAGAAAATGGAAGAAGCAAGAAAATCTTATATGGCTGCTGTTTCTGTTTCCAAGGAAAAACGAGATGAGGAATCTATTGCTGCTGCTGCCAATGCTAGGTTACATCTTCAGTCACTTGTTTTCAAATCCAAAAATTTTAACCTGTAATATCACTACTAGTTTTATTTAATGAGCTACAAGTTAGGTCCCTTTAGTCAAAATGGTGAGGCACTTAACCTGTGTGTGAGATTGATTTGTACAAGCCTGTTATGAACAAATATATAAAGTTATGCCATTTTATGTGCTGAAATACTAAACGAGCATGTTCAATGAAGTGAAAATGTGTTCTTTCGCGGGTCTAACTGCATTCAGAATTTTAACAGACCTGTGAATCTGGTTTTCCAAAAGCAGAAGAGTTAATCAATTCATGACCTGATGAGTTTTAGTTTCTCTTTCAAGTGGCATTCAGAAAGTTTCCTTCTAGAAGCTGATTCTGATTGGCAGTGGTTATTTTTCACATCTGCGAACTGTTCCAAAGCAGTAGTAATTGTGTATGTATGTAATATATGCCACTTCTTGTACCCAAGTTGGCTTCTGGTTCCCCTACTTTCATACATTATACTCACAAGGTGGGGGATCTTGTTCCATTTATTAAGCTATATTGTCTTATGTGGACAGGATATATTTGTGCTTCTTAGTATAAATTCTAC
>Glyma17g08930.2 sequence type=CDS gene model=Glyma17g08930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGGGGTAGATCGGTCATTTCAATTTTAATATCCGTTGTTTTGTCTGGAAAGGAAAGGAGAGTGAGGCATTTTCAAAGTGCAGTCTCTCAGAGTCATTTCTCTCTCCGGCGAGAAAGAAAAATGCAGCATTTCATGGATTTGCAAGCGAATTCGGAGTTGGGTGAGTCGAATTCATGGCTTTCAGTGAAAGAGCAGTCCGGTGCGGCACCCAACACCAATTTGGATCGCGTCCTCTTCAACGACCTCGTCGAGATTGTCCCTCTCGTTCAGTCACTCATCGATCGTAAAGCAAGCCGTTCATTCACGCGGCGTGGTTCCATGATCTACACCAAGACACCCACCAGAGAATCATTGTCCAAAAGAGTAACAGATTCAAAAAGTAGGAATGTTGCCCCATCTATTCCTGCCAAAAAGAAAAGGGACCACGGAGAAAAAGAACAAGGAAAAAATGGCAGCAATGATGCTGATAACTATTCCATGTTTTCTTCAAGAACTTTGGCTTCAGAAAAGGACATAGAAGAGTTAGGCATGTTGAAGGAGCAGGTAGAGGAACTTCAGAGGAAATTGTTGGAGAAAGATGAACTTTTAAAGTCAGCAGAAAACACAAGAGACCAGATGAATGTTTTCAATGCAAAACTTGATGAACTGAAACACCAGGCTTCAGAAAAGGAATCTTTACTGAAGTATACTCAACAACAGCTCTCCGATGCTAAGATTAAGCTTGCAGACAAGCAAGCTGCTCTTGAAAAGATACAATGGGAAGCGATGACATCCAACAAGAAAGTAGATAAACTCCAAGATGAGCTAGGTTCCATGCAAGCAGATATTACATCATTCACGTTATTACTGGAAGGATTGTCAAAAACTGACACTGCTAAATACACTGATGATTATGACGTCAAGCCTTATGATTTCAGTCACCTGCCTAGTATTGATGATTTGGACGAGATGGAATTGCAGAAAATGGAAGAAGCAAGAAAATCTTATATGGCTGCTGTTTCTGTTTCCAAGGAAAAACGAGATGAGGAATCTATTGCTGCTGCTGCCAATGCTAGGTTACATCTTCAGTCACTTGTTTTCAAATCCAAAAATTTTAACCTGTAA >Glyma17g08930.3 sequence type=CDS gene model=Glyma17g08930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGGGGTAGATCGGTCATTTCAATTTTAATATCCGTTGTTTTGTCTGGAAAGGAAAGGAGAGTGAGGCATTTTCAAAGTGCAGTCTCTCAGAGTCATTTCTCTCTCCGGCGAGAAAGAAAAATGCAGCATTTCATGGATTTGCAAGCGAATTCGGAGTTGGGTGAGTCGAATTCATGGCTTTCAGTGAAAGAGCAGTCCGGTGCGGCACCCAACACCAATTTGGATCGCGTCCTCTTCAACGACCTCGTCGAGATTGTCCCTCTCGTTCAGTCACTCATCGATCGTAAAGCAAGCCGTTCATTCACGCGGCGTGGTTCCATGATCTACACCAAGACACCCACCAGAGAATCATTGTCCAAAAGAGTAACAGATTCAAAAAGTAGGAATGTTGCCCCATCTATTCCTGCCAAAAAGAAAAGGGACCACGGAGAAAAAGAACAAGGAAAAAATGGCAGCAATGATGCTGATAACTATTCCATGTTTTCTTCAAGAACTTTGGCTTCAGAAAAGGACATAGAAGAGTTAGGCATGTTGAAGGAGCAGGTAGAGGAACTTCAGAGGAAATTGTTGGAGAAAGATGAACTTTTAAAGTCAGCAGAAAACACAAGAGACCAGATGAATGTTTTCAATGCAAAACTTGATGAACTGAAACACCAGGCTTCAGAAAAGGAATCTTTACTGAAGTATACTCAACAACAGCTCTCCGATGCTAAGATTAAGCTTGCAGACAAGCAAGCTGCTCTTGAAAAGATACAATGGGAAGCGATGACATCCAACAAGAAAGTAGATAAACTCCAAGATGAGCTAGGTTCCATGCAAGCAGATATTACATCATTCACGTTATTACTGGAAGGATTGTCAAAAACTGACACTGCTAAATACACTGATGATTATGACGTCAAGCCTTATGATTTCAGTCACCTGCCTAGTATTATTGTATCCGTACTTCCCGTAAGGTTGTAA
>Glyma17g08930.2 sequence type=predicted peptide gene model=Glyma17g08930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high RGRSVISILISVVLSGKERRVRHFQSAVSQSHFSLRRERKMQHFMDLQANSELGESNSWLSVKEQSGAAPNTNLDRVLFNDLVEIVPLVQSLIDRKASRSFTRRGSMIYTKTPTRESLSKRVTDSKSRNVAPSIPAKKKRDHGEKEQGKNGSNDADNYSMFSSRTLASEKDIEELGMLKEQVEELQRKLLEKDELLKSAENTRDQMNVFNAKLDELKHQASEKESLLKYTQQQLSDAKIKLADKQAALEKIQWEAMTSNKKVDKLQDELGSMQADITSFTLLLEGLSKTDTAKYTDDYDVKPYDFSHLPSIDDLDEMELQKMEEARKSYMAAVSVSKEKRDEESIAAAANARLHLQSLVFKSKNFNL* >Glyma17g08930.3 sequence type=predicted peptide gene model=Glyma17g08930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high RGRSVISILISVVLSGKERRVRHFQSAVSQSHFSLRRERKMQHFMDLQANSELGESNSWLSVKEQSGAAPNTNLDRVLFNDLVEIVPLVQSLIDRKASRSFTRRGSMIYTKTPTRESLSKRVTDSKSRNVAPSIPAKKKRDHGEKEQGKNGSNDADNYSMFSSRTLASEKDIEELGMLKEQVEELQRKLLEKDELLKSAENTRDQMNVFNAKLDELKHQASEKESLLKYTQQQLSDAKIKLADKQAALEKIQWEAMTSNKKVDKLQDELGSMQADITSFTLLLEGLSKTDTAKYTDDYDVKPYDFSHLPSIIVSVLPVRL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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