SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G60880 | AT | Annotation by Michelle Graham. TAIR10: breaking of asymmetry in the stomatal lineage | chr5:24488553-24489703 REVERSE LENGTH=262 | SoyBase | E_val: 1.00E-16 | ISS |
| GO:0009786 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of asymmetric cell division | SoyBase | N/A | ISS |
| GO:0009826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0010374 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0019897 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to plasma membrane | SoyBase | N/A | ISS |
| UniRef100_B9RLI7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9RLI7_RICCO | SoyBase | E_val: 5.00E-20 | ISS |
| UniRef100_Q5BPF3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Breaking of asymmetry in the stomatal lineage protein n=1 Tax=Arabidopsis thaliana RepID=Q5BPF3_ARATH | SoyBase | E_val: 6.00E-14 | ISS |
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Glyma17g08921 not represented in the dataset |
Glyma17g08921 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g07431 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g081600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g08921.1 sequence type=CDS gene model=Glyma17g08921 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAAGCTTGGCATTTGATAAGAAAAACGAAAAAAGTTTTAATAGTATTAGTAACAACGATTTGTCACGGCCAAGCAAAAAAATCCACAGCAAGGAGAGACTTTCAAACAATCCAATAATAAAGGATAAAGATGATGGTGGGGTTCCCATTGGAAACAAGTTTGATTGTTCAAGTTGGTCACTCTCCGCGGATGAAGATTACATAGTGTTTTGCTTTGGAAAGGATGTGGCACAAGGTGACAAAAGTGTTAATGAAGTGCATAAAAATTCAAGGCCAGTGAATCGCAAGCTGAAATATGGTGAGAATGAAGAACAAGTTAGAGACCTGAACATTCATGAGAAAATATCAAATGCTAATCAGCACCACAATGATGATGACATGAGAAGGGCAGAATCAAGTAACTCTGACCAATCTGAAGGCAGTAGAAGTTCTTTTGCATTCCCTGTGTTAGGTTGGGAATGGATTGGAAGCCCTGTACAAATGCCCAAGTCAGAAGGTTTGCACCTAAGGAAGAACAAGGCTCGAGCTATGCGATTTGAGTGTTGTAGATTCTGA
>Glyma17g08921.1 sequence type=predicted peptide gene model=Glyma17g08921 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKSLAFDKKNEKSFNSISNNDLSRPSKKIHSKERLSNNPIIKDKDDGGVPIGNKFDCSSWSLSADEDYIVFCFGKDVAQGDKSVNEVHKNSRPVNRKLKYGENEEQVRDLNIHEKISNANQHHNDDDMRRAESSNSDQSEGSRSSFAFPVLGWEWIGSPVQMPKSEGLHLRKNKARAMRFECCRF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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