Glyma17g08900 - SoyBase

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Report for Sequence Feature Glyma17g08900

Feature Type:	gene_model
Chromosome:	Gm17
Start:	6589391
stop:	6591106
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g08900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G17390	AT	Annotation by Michelle Graham. TAIR10: Adenine nucleotide alpha hydrolases-like superfamily protein \| chr5:5727640-5728688 FORWARD LENGTH=285	SoyBase	E_val: 2.00E-54	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF00582	PFAM	Universal stress protein family	JGI		ISS
UniRef100_C6T3X9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T3X9_SOYBN	SoyBase	E_val: 1.00E-166	ISS
UniRef100_Q9M9P7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Adenine nucleotide alpha hydrolases-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9M9P7_ARATH	SoyBase	E_val: 1.00E-51	ISS

Expression Patterns of Glyma17g08900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g08900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g081300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g08900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g08900

Limit To All Plant Sequences

>Glyma17g08900.1   sequence type=CDS   gene model=Glyma17g08900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGGCCACGCATTCGGTTGTGTTTTGGTCGCGCCACGCCTCGTGTTCGAGCCTTTTCTGCATCTTCTTTTCGATCCAAGTCCCCTTCCTCCTCCTCTGCCTCAATCAAATGTGAAAACAGGACTGAGTTTTCAAGCAACGGAGGCCACGAAGCTGGCAGAGACAACAGGGGTGAAACGGGAAATAAGATACTGGTGGTTGTTGATTCTAGCTTTGAAGCTAAAGGGGCTCTTGAATGGGCACTCTCTCACACTGTTCAGACCCAGGACACTGTTGTTCTTGTTCATGTAGCCAGACCCACAAGGGAAGGAACTGAATCTGGTTCGAAGTTTAATGTGAAGACTTATCAACTTCTCCTTGACATGAAAAGCATGTGCGAGATGAAGAAACCCGGGGTGGTAGTGAATGTGGTGATGCTTGAAGGAGAGGAAAAGGGTGTTGCAATAGTGCAAGAGGCAAAGAAACAGAGGGTGTCATTATTGGTAGTGGGACAAAGAAAACAATCCATCTTGGGGTGCATCATGCGGAGGTGGGTACGAAGAAGGGGAACAAGACCTGGGATTGTTGAGTATTGTATACAGAACTCTCCTTGCATGACCATTGCGGTGAGGAGGAAGAATAAGAAACATGGAGGCTACTTGATTACCACCAAACGCCATAAAAACTTTTGGCTTTTGGCTTAA

Predicted protein sequences of Glyma17g08900

Limit To All Plant Sequences

>Glyma17g08900.1   sequence type=predicted peptide   gene model=Glyma17g08900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRPRIRLCFGRATPRVRAFSASSFRSKSPSSSSASIKCENRTEFSSNGGHEAGRDNRGETGNKILVVVDSSFEAKGALEWALSHTVQTQDTVVLVHVARPTREGTESGSKFNVKTYQLLLDMKSMCEMKKPGVVVNVVMLEGEEKGVAIVQEAKKQRVSLLVVGQRKQSILGCIMRRWVRRRGTRPGIVEYCIQNSPCMTIAVRRKNKKHGGYLITTKRHKNFWLLA*

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