SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G03820 | AT | Annotation by Michelle Graham. TAIR10: nonsense-mediated mRNA decay NMD3 family protein | chr2:1165149-1166699 REVERSE LENGTH=516 | SoyBase | E_val: 0 | ISS |
| GO:0000184 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | SoyBase | N/A | ISS |
| GO:0006611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein export from nucleus | SoyBase | N/A | ISS |
| GO:0007029 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum organization | SoyBase | N/A | ISS |
| GO:0009834 | GO-bp | Annotation by Michelle Graham. GO Biological Process: secondary cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2613 | KOG | NMD protein affecting ribosome stability and mRNA decay | JGI | ISS | |
| PTHR12746 | Panther | NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 | JGI | ISS | |
| PF04981 | PFAM | NMD3 family | JGI | ISS | |
| UniRef100_B9T5L2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nonsense-mediated mRNA decay protein, putative n=1 Tax=Ricinus communis RepID=B9T5L2_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MZG9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MZG9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g08880 not represented in the dataset |
Glyma17g08880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g081100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g08880.2 sequence type=CDS gene model=Glyma17g08880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACAGGAATCTGGTATGTTCATGGTTAACCAAACAATTGGCAGTGTTTTGTGCTGCAAATGTGGAATTCCAATGCAACCAAATGCTGCTAAGATGTGTGTGAAGTGTCTGCGATCGGAAGTCGATATTACAGAAGGACTGCTGAAGTGTCTAGTACTGGTGCATTGCCCTGAGTGTGAGAGTTACTTGCAACCACCAAGAAGTTGGGTCAAGCTGCAGCTGGAGTCAAAGGAGCTGCTGACATTTTGCTTAAAGAAATTGCAGAAGAATTTGAATTCGAATAAAGTGAGGTTGGTGCATGCTGAGTTTATTTGGACTGAGCCCCATTCCAGGAGAGTAAAAGTCAAGGTCAAGGTTCAGAAGGAGGTTCTTAATGGAGCAATACTTGAACAATCTTATCCTGTGGAGTATGTTCAACAAGAGCATATGTGTGAATCTTGTTCTAGGGTCCAGGCTAATCCTGACCAGTGGGTTGCTGCTGTGCAACTCAGGCAACATGTTTCTCACCGGCGTACTTTCTTTTACTTGGAGCAGCTGATTCTGAAGCATGGTGCGGCTGCCACTGCTATAAGAATCAAGCAGATGGAACAAGGTATTGACTTCTTTTTCTCTAATCGAAGGAAAGTTGCTCCATTAAGGAGCCATCACGATAAGCAGCTTGTTTCTCATGATCCAAAGAGTAATAACTACAACTACAAATATACATTTTCTGTTGAAATCAGCCCTATTTGCCGTGAGGATCTAATCTGTGTGCCTCCTAGAGTTGCTGCTGGTTTGGGAAATATTGGTCCACTTGTGATTTGCACTAAGGTTACCAACAGCATTGCTTTGCTTGATCCATTTACCTTGAGGCACTGTTTCATAGATGCTGATCAGTACTGGAGAGCATCCTTCAAGTCATTACTTACTAGCAGACAATTGGTGGAATATATTGTGCTGGATGTGGAGACTGTTTCATCTGAGGTTACTATTGGTGACACGAAATATCGTTTAGCAGATGCTCAAGTGGCTCGTATTTCAGATTTTGGAAAGAACGACACGATATTTAACATCAAGACTCATCTTGGCCATCTTTTGAATCCTGGTGATTATGCACTTGGTTATGATCTGTGTGGGGCTAATAGTAATGACATGGAATTGGACAAGTACAAAGGACACATTCCTGAAGCAATTTTAATAAAGAAGAGTTATGAAGAGAAGCACCAAAAGAAACGTGGGAAGCCTCGTTCATGGAAGCTTAAATCACTTGAGATGGAGGTTGATGATAAGGGTAGAGTTGATCAAGGTAAAATGGTCTCAGAATATGAACAATTCATTCAAGATCTGGAAGAAAACCCTGAAATGAGGTTCAACATATCATTGTACTGA
>Glyma17g08880.2 sequence type=predicted peptide gene model=Glyma17g08880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAQESGMFMVNQTIGSVLCCKCGIPMQPNAAKMCVKCLRSEVDITEGLLKCLVLVHCPECESYLQPPRSWVKLQLESKELLTFCLKKLQKNLNSNKVRLVHAEFIWTEPHSRRVKVKVKVQKEVLNGAILEQSYPVEYVQQEHMCESCSRVQANPDQWVAAVQLRQHVSHRRTFFYLEQLILKHGAAATAIRIKQMEQGIDFFFSNRRKVAPLRSHHDKQLVSHDPKSNNYNYKYTFSVEISPICREDLICVPPRVAAGLGNIGPLVICTKVTNSIALLDPFTLRHCFIDADQYWRASFKSLLTSRQLVEYIVLDVETVSSEVTIGDTKYRLADAQVARISDFGKNDTIFNIKTHLGHLLNPGDYALGYDLCGANSNDMELDKYKGHIPEAILIKKSYEEKHQKKRGKPRSWKLKSLEMEVDDKGRVDQGKMVSEYEQFIQDLEENPEMRFNISLY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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