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Report for Sequence Feature Glyma17g08851

Feature Type:gene_model
Chromosome:Gm17
Start:6552882
stop:6555508
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g08851
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G27900AT Annotation by Michelle Graham. TAIR10: RNA helicase family protein | chr1:9715615-9720346 REVERSE LENGTH=700 SoyBaseE_val: 7.00E-11ISS
GO:0006310GO-bp Annotation by Michelle Graham. GO Biological Process: DNA recombination SoyBaseN/AISS
GO:0007062GO-bp Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion SoyBaseN/AISS
GO:0007131GO-bp Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination SoyBaseN/AISS
GO:0010332GO-bp Annotation by Michelle Graham. GO Biological Process: response to gamma radiation SoyBaseN/AISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0032204GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance SoyBaseN/AISS
GO:0033044GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization SoyBaseN/AISS
GO:0042138GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation SoyBaseN/AISS
GO:0043247GO-bp Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage SoyBaseN/AISS
GO:0045132GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0004004GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP-dependent RNA helicase activity SoyBaseN/AISS
GO:0004386GO-mf Annotation by Michelle Graham. GO Molecular Function: helicase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008026GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
UniRef100_Q9C7G2UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent RNA helicase, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C7G2_ARATH SoyBaseE_val: 3.00E-08ISS
UniRef100_UPI0002337562UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337562 related cluster n=1 Tax=unknown RepID=UPI0002337562 SoyBaseE_val: 1.00E-13ISS

Expression Patterns of Glyma17g08851
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g08851 not represented in the dataset
Glyma17g08851 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g08851 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g080800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g08851
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma17g08851
>Glyma17g08851.2   sequence type=transcript   gene model=Glyma17g08851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATCAAGGACTGCTTGAGAAAAAGGAAAAGAGCATTTTACATATTTAAACATCATGATGCAGTAGCTGATGTGTTTCATTCTCAATTCAATAAACAGGGACTTATTCATGAAGTGTTAATTACCACAATATTATGTGGCTTGTCTAGTGCCAAAGTGACTAAGTCTTGAAAATTGACCAGAAGGAAAGAACGGCTAAATTTCCACAATATTACGTTGTTTAATTAGTATTGTGAACTTTGCTTTAATGTTCTTTTGCAGTTATATCATTCTTTGCTGCTCTTGGATTTTTGTTGTATGGTGGAAGGTAAGTTGTTGTCTTTCAAATGGCACAATCCTTGCTATGTCATTGAACACTAACATGCTCAGAATGATGTAGGTTGTTTTTCTTGTCGAGGCGCTTCCCCATTGAATCCACAGGCTGTCTAAAGAAACTTTATGAGGTTGATATCTAAAGTATGAGTTGCTTTATGTTTTTCAACCTTAGAGAGGAAGTATATCCTTAAATATCAAATTCAGACTCTGTTCCAAGTGTGATGTAAAAATTGTATGAGGACTTAAACTCTGGTGAAAGCAGTTGGTGCCTAACTTTTCATCTTGGTAGGTTGGGTTTGTTGCCCTGGTGGCGTAAGGTGACACTATATAACAACGTAACTATGCGGTTATCTTTCGTTTTTTGTTTGCATAGCTTATCGGAATTCTCGGTAAAGTTCCTTCTAGTTTAATGATTGCTTGGTGGTGATTATTTGATTGCTGGTTAGTGTTTACTCCAATTGTATCTTGCCGGCAATTCCAGTTGCAGGTCATTTTTTATGGTTGAAGATAGTTTAATAAGTTAGTCTTATCATTTGAAACTATACAATTAATATCTGGTGCATGATTTTGTTGTTATATTTACCCTATACTTTTCTACTCCAAAATGTAAATCTTAGTGCATGTTTTGATTATAACTTATTTAGGGGAAACAATCCTTTTTTTTTATTTGAAGTTTCCTGAGATTTCTTTCCCTTTTTTGGTGTCCGTACGCATTTGTTTTCAAGAATTAACCTGTATCCGAAATTCCTTAGTTTCTGATATGATGTGATGATTGAATAAGTTTCAAATGATCTTCATGAAGGATGACATAGAGAAGTTGGTATCTAAGTTAGTAGACAAGGTTTGTGCTCCGGAGGAAGGTTCTTGCATTGATGCTACAATCCTTCCCCTACATGGTTGTTTGCCCCTTGAATTGCAGGATGAATTGTCTAGCATAAAGAATCAACTTCTACAGGGTTATTCCCCGATGATTCATATCCATCAGGACCTCCATTATTTATGGAGACACCAAGACCATGTTCTCATCTTGCTTAGATTGAGTTCCCAAATTTTGATGAGGTAA
Coding sequences of Glyma17g08851
>Glyma17g08851.1   sequence type=CDS   gene model=Glyma17g08851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCTTCATGAAGGATGACATAGAGAAGTTGGTATCTAAGTTAGTAGACAAGGTTTGTGCTCCGGAGGAAGGTTCTTGCATTGATGCTACAATCCTTCCCCTACATGGTTGTTTGCCCCTTGAATTGCAGGATGAATTGTCTAGCATAAAGAATCAACTTCTACAGGGTTATTCCCCGATGATTCATATCCATCAGGACCTCCATTATTTATGGAGACACCAAGACCATGTTCTCATCTTGCTTAGATTGAGTTCCCAAATTTTGATGAGGTAA

>Glyma17g08851.2   sequence type=CDS   gene model=Glyma17g08851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCTTCATGAAGGATGACATAGAGAAGTTGGTATCTAAGTTAGTAGACAAGGTTTGTGCTCCGGAGGAAGGTTCTTGCATTGATGCTACAATCCTTCCCCTACATGGTTGTTTGCCCCTTGAATTGCAGGATGAATTGTCTAGCATAAAGAATCAACTTCTACAGGGTTATTCCCCGATGATTCATATCCATCAGGACCTCCATTATTTATGGAGACACCAAGACCATGTTCTCATCTTGCTTAGATTGAGTTCCCAAATTTTGATGAGGTAA
Predicted protein sequences of Glyma17g08851
>Glyma17g08851.1   sequence type=predicted peptide   gene model=Glyma17g08851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIFMKDDIEKLVSKLVDKVCAPEEGSCIDATILPLHGCLPLELQDELSSIKNQLLQGYSPMIHIHQDLHYLWRHQDHVLILLRLSSQILMR*

>Glyma17g08851.2   sequence type=predicted peptide   gene model=Glyma17g08851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIFMKDDIEKLVSKLVDKVCAPEEGSCIDATILPLHGCLPLELQDELSSIKNQLLQGYSPMIHIHQDLHYLWRHQDHVLILLRLSSQILMR*






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