Glyma17g08820 - SoyBase

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Report for Sequence Feature Glyma17g08820

Feature Type:	gene_model
Chromosome:	Gm17
Start:	6510043
stop:	6512053
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g08820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G74110	AT	Annotation by Michelle Graham. TAIR10: cytochrome P450, family 78, subfamily A, polypeptide 10 \| chr1:27866667-27868368 REVERSE LENGTH=537	SoyBase	E_val: 0	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016705	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	SoyBase	N/A	ISS
GO:0019825	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxygen binding	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
KOG0156	KOG	Cytochrome P450 CYP2 subfamily	JGI		ISS
PTHR24298	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24298:SF44	Panther		JGI		ISS
PF00067	PFAM	Cytochrome P450	JGI		ISS
UniRef100_B9RLL3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450, putative n=1 Tax=Ricinus communis RepID=B9RLL3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MT86	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MT86_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g08820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g08820

Paralog	Evidence	Comments
Glyma05g00220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g08820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g080500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g08820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g08820

Limit To All Plant Sequences

>Glyma17g08820.1   sequence type=CDS   gene model=Glyma17g08820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATCATCGGAACTCTCCTCTTTCTTTCTTCTCCGTCTATCAGACATACTCAGTTTCGATGTTTTGCTCGGAGTTATGTTTCTAGTTGCCGTGTTCGGCTACTGGCTGGTTCCCGGCGGTCTTGCTTGGGCTTTTTCCAAGTTCAAGCCCGCGATTCCCGGGCCTTCCGGTTACCCGGTGGTGGGTCTGGTTTGGGCTTTCATAGGGCCTCTTACTCACAGGGTCCTTGCTAAGTTGGCTGAAACCTTTGATGCAAAGCCCTTGATGGCGTTCTCTGTGGGGTTCACTCGTTTCATCATCTCTTCTCACCCCGACACCGCCAAAGAGATCTTGAACAGTTCCGCTTTCGCGGATCGTCCCGTTAAGGAATCTGCTTATGAACTTCTCTTTCACCGTGCGATGGGGTTTGCACCCTACGGTGAGTACTGGAGGAACCTGAGGAGGATCTCCGCAACTCACATGTTCTCTCCGAGGAGAATCGCAGCCCAAGGAGTGTTTCGGGCCCGGATTGGAGCCCAAATGGTGAGAGACATCGTGGGCCTGATGGGGAGGGACGGTGTGGTGGAGGTGAGGAAGGTGTTGCATTTTGGGTCGTTGAATAACGTGATGAAGAGCGTGTTTGGGAGGAGTTATGTGTTTGGTGAGGGGGGTGATGGGTGTGAGCTCGAGGGGTTGGTGAGCGAGGGGTATCATTTGCTTGGGGTGTTTAACTGGAGTGACCACTTTCCACTCTTGGGTTGGTTGGATTTGCAAGGTGTGAGGAAGAGCTGTAGGAGTTTGGTTGATAGAGTGAATGTTTATGTTGGGAAAATCATTTTGGAGCATAGAGTGAAGAGGGTTGCTCAAGGTGAGGATAATAAGGCCATTGATACTGATAGTTCTGGTGACTTTGTTGATGTGCTGCTGGATTTGGAGAAAGAGAATAGGCTAAACCACTCTGATATGGTTGCTGTTTTGTGGGAAATGATATTTAGAGGGACTGATACGGTAGCTATCCTTCTAGAGTGGATTCTAGCAAGAATGGTTCTTCATCCAGAAATACAAGCAAAGGCACAATCTGAAATAGACTCTGTGGTTGGGTCTGGGCGTAGTGTGAGTGATGATGACCTTCCAAACCTTCCTTACGTTCGAGCCATAGTGAAGGAAACCTTAAGGATGCACCCACCAGGCCCTCTTCTTTCATGGGCCAGACTTTCTATTCATGACACACAAATTGGCAATCACTTTGTTCCAGCTGGCACCACTGCTATGGTAAACATGTGGGCCATAACTCACGACCAAGAAGTGTGGTATGAGCCAAAACAGTTCAAGCCGGAGCGTTTTTTGAAGGACGAGGACGTGCCAATCATGGGATCTGATCTTAGGTTGGCACCTTTTGGCTCTGGGAGGAGAGTGTGCCCTGGAAAAGCCATGGGCTTGGCCACTGTTGAGCTTTGGCTTGCTATGTTCTTACAAAAATTCAAATGGATGCCCTGTGATGATTCTGGTGTTGACTTGTCTGAGTGTTTGAAGCTCTCCATGGAGATGAAACACTCTCTCAAAACCAAAGTTGTTGCAAGGCCTGTAGTTTCTCTTGCAATGTAA

Predicted protein sequences of Glyma17g08820

Limit To All Plant Sequences

>Glyma17g08820.1   sequence type=predicted peptide   gene model=Glyma17g08820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSELSSFFLLRLSDILSFDVLLGVMFLVAVFGYWLVPGGLAWAFSKFKPAIPGPSGYPVVGLVWAFIGPLTHRVLAKLAETFDAKPLMAFSVGFTRFIISSHPDTAKEILNSSAFADRPVKESAYELLFHRAMGFAPYGEYWRNLRRISATHMFSPRRIAAQGVFRARIGAQMVRDIVGLMGRDGVVEVRKVLHFGSLNNVMKSVFGRSYVFGEGGDGCELEGLVSEGYHLLGVFNWSDHFPLLGWLDLQGVRKSCRSLVDRVNVYVGKIILEHRVKRVAQGEDNKAIDTDSSGDFVDVLLDLEKENRLNHSDMVAVLWEMIFRGTDTVAILLEWILARMVLHPEIQAKAQSEIDSVVGSGRSVSDDDLPNLPYVRAIVKETLRMHPPGPLLSWARLSIHDTQIGNHFVPAGTTAMVNMWAITHDQEVWYEPKQFKPERFLKDEDVPIMGSDLRLAPFGSGRRVCPGKAMGLATVELWLAMFLQKFKWMPCDDSGVDLSECLKLSMEMKHSLKTKVVARPVVSLAM*

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